Wall clock time and date at job start Tue Mar 31 2020 02:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21313 * 119.99822 * 2 1 4 4 C 1.46749 * 119.99882 * 180.27454 * 2 1 3 5 5 C 1.40113 * 120.09497 * 359.45362 * 4 2 1 6 6 C 1.36545 * 119.90137 * 179.78839 * 5 4 2 7 7 C 1.39312 * 120.09537 * 0.46123 * 6 5 4 8 8 N 1.38896 * 119.90582 * 179.76629 * 7 6 5 9 9 C 1.46955 * 111.00018 * 123.82090 * 8 7 6 10 10 C 1.53056 * 109.36204 * 176.81495 * 9 8 7 11 11 N 1.46953 * 109.36496 * 58.39966 * 10 9 8 12 12 C 1.46902 * 111.00185 * 176.81228 * 11 10 9 13 13 C 1.50706 * 109.46982 * 293.80427 * 12 11 10 14 14 H 1.08008 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99915 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00234 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99932 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46980 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47272 * 119.99633 * 17 15 13 20 20 H 1.48497 * 109.46965 * 239.99679 * 17 15 13 21 21 C 1.46960 * 110.88241 * 300.68157 * 11 10 9 22 22 C 1.46963 * 110.99696 * 0.02562 * 8 7 6 23 23 C 1.39312 * 120.19529 * 359.78535 * 7 6 5 24 24 C 1.36546 * 120.09489 * 359.97438 * 23 7 6 25 25 H 1.09004 * 109.46983 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47174 * 119.99276 * 1 2 3 27 27 H 1.08998 * 109.47585 * 239.99978 * 1 2 3 28 28 H 1.07997 * 120.04738 * 359.97438 * 5 4 2 29 29 H 1.07996 * 119.95354 * 180.25131 * 6 5 4 30 30 H 1.09007 * 109.48801 * 296.77736 * 9 8 7 31 31 H 1.08995 * 109.48887 * 56.84763 * 9 8 7 32 32 H 1.08993 * 109.48628 * 298.43430 * 10 9 8 33 33 H 1.08998 * 109.50802 * 178.37918 * 10 9 8 34 34 H 1.08999 * 109.46818 * 53.79514 * 12 11 10 35 35 H 1.08994 * 109.47548 * 173.80442 * 12 11 10 36 36 H 0.97000 * 120.00471 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.48462 * 299.35102 * 21 11 10 38 38 H 1.09005 * 109.48834 * 179.28806 * 21 11 10 39 39 H 1.08997 * 109.48679 * 303.16016 * 22 8 7 40 40 H 1.09006 * 109.48661 * 63.22230 * 22 8 7 41 41 H 1.07993 * 119.95567 * 179.97438 * 23 7 6 42 42 H 1.07999 * 120.05299 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2407 -1.2709 -0.0061 5 6 1.5422 -2.4855 -0.0003 6 6 2.2288 -3.6657 -0.0104 7 6 3.6219 -3.6633 -0.0167 8 7 4.3165 -4.8661 -0.0220 9 6 5.2360 -4.9383 -1.1661 10 6 6.0373 -6.2402 -1.0917 11 7 5.1125 -7.3822 -1.0902 12 6 5.8469 -8.6544 -1.0958 13 6 6.5893 -8.8001 -2.3992 14 1 6.5219 -8.0253 -3.1486 15 6 7.3537 -9.9230 -2.6353 16 7 7.4354 -10.8667 -1.7230 17 14 8.2733 -10.1040 -4.2512 18 1 8.0181 -8.9138 -5.1019 19 1 9.7293 -10.2176 -3.9821 20 1 7.8031 -11.3245 -4.9543 21 6 4.1929 -7.3100 0.0539 22 6 3.3916 -6.0082 -0.0206 23 6 4.3206 -2.4580 -0.0172 24 6 3.6419 -1.2732 -0.0121 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5137 -0.8901 27 1 -0.3634 -0.5138 0.8899 28 1 0.4623 -2.4881 0.0090 29 1 1.6912 -4.6023 -0.0101 30 1 4.6644 -4.9156 -2.0940 31 1 5.9186 -4.0890 -1.1381 32 1 6.6297 -6.2507 -0.1769 33 1 6.6996 -6.3097 -1.9546 34 1 6.5577 -8.6672 -0.2695 35 1 5.1443 -9.4801 -0.9836 36 1 7.9734 -11.6565 -1.8890 37 1 4.7644 -7.3328 0.9817 38 1 3.5103 -8.1594 0.0259 39 1 2.7295 -5.9389 0.8425 40 1 2.7992 -5.9976 -0.9355 41 1 5.4005 -2.4607 -0.0216 42 1 4.1842 -0.3392 -0.0129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016553708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:29 Heat of formation + Delta-G solvation = 5.733509 kcal Electronic energy + Delta-G solvation = -22201.285401 eV Core-core repulsion = 18953.408205 eV Total energy + Delta-G solvation = -3247.877196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.64041 -39.40824 -37.68970 -35.18168 -32.66265 -32.02272 -31.17698 -30.31202 -29.35476 -27.48408 -25.32375 -24.01417 -22.88261 -21.93584 -21.42918 -20.05652 -19.30005 -17.76200 -16.48547 -16.34841 -15.91684 -15.21329 -15.15178 -14.89962 -14.61548 -14.41709 -14.24767 -13.87625 -13.78996 -13.75873 -13.30259 -12.78482 -12.67438 -12.39071 -12.28870 -12.17897 -11.84479 -11.33806 -11.26830 -11.05076 -10.89134 -10.77209 -10.49916 -10.47687 -9.94458 -9.87332 -9.73943 -9.24543 -9.23476 -8.50394 -7.91117 -7.37967 -6.09114 -4.11118 0.52904 1.29645 2.24233 3.26807 3.34610 3.38738 3.54160 3.82980 3.94025 4.36320 4.54239 4.72930 4.79804 4.82980 5.01563 5.07137 5.10417 5.17193 5.25841 5.28256 5.30927 5.46725 5.48848 5.58698 5.64005 5.67265 5.82641 5.84528 5.91623 6.08351 6.15259 6.26058 6.28186 6.40226 6.52519 6.58371 6.92144 7.18866 7.20058 7.26015 7.37397 7.71277 7.97652 8.08497 8.44167 8.96328 9.53699 11.01738 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.037298 B = 0.002866 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.522866 B = 9765.791635 C =10098.908711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.398 3.602 3 O -0.471 6.471 4 C -0.220 4.220 5 C -0.039 4.039 6 C -0.193 4.193 7 C 0.165 3.835 8 N -0.490 5.490 9 C 0.062 3.938 10 C 0.064 3.936 11 N -0.538 5.538 12 C 0.194 3.806 13 C -0.509 4.509 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.053 3.947 22 C 0.054 3.946 23 C -0.163 4.163 24 C -0.030 4.030 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.094 0.906 34 H -0.007 1.007 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.131 0.869 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.661 16.245 4.416 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.278 3.722 3 O -0.348 6.348 4 C -0.222 4.222 5 C -0.058 4.058 6 C -0.214 4.214 7 C 0.064 3.936 8 N -0.203 5.203 9 C -0.063 4.063 10 C -0.065 4.065 11 N -0.264 5.264 12 C 0.069 3.931 13 C -0.548 4.548 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.076 4.076 22 C -0.072 4.072 23 C -0.183 4.183 24 C -0.049 4.049 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.011 0.989 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.149 0.851 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.192 16.492 4.425 20.981 hybrid contribution 0.578 -0.492 -0.546 0.935 sum -11.615 16.000 3.878 20.148 Atomic orbital electron populations 1.22244 0.94193 1.04856 1.04428 1.22340 0.91484 0.87720 0.70649 1.90535 1.72234 1.34475 1.37588 1.20313 0.94526 0.94474 1.12914 1.20999 0.99702 0.91214 0.93858 1.21111 0.93256 0.99225 1.07839 1.19400 0.91794 0.90716 0.91733 1.58837 1.19258 1.00978 1.41235 1.22471 0.94575 0.99656 0.89555 1.22061 0.94170 0.88438 1.01827 1.62326 1.20228 1.04596 1.39229 1.19720 0.92138 0.84474 0.96799 1.21170 1.27629 1.04568 1.01410 0.91832 1.24992 0.96798 0.95761 0.97036 1.69960 1.40684 1.09004 1.34037 0.86445 0.79367 0.78129 0.83506 1.19646 1.21069 1.20984 1.22117 0.96366 0.95487 0.93612 1.22452 0.94074 0.89376 1.01346 1.20571 1.00445 0.90726 1.06560 1.20980 0.93075 0.98211 0.92667 0.89977 0.88937 0.88973 0.85298 0.84747 0.92736 0.90128 0.94964 0.88807 0.98932 0.95063 0.92901 0.94875 0.90327 0.90176 0.92474 0.85120 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 8.92 36.01 0.32 -0.94 16 2 C 0.40 4.14 7.21 -30.87 -0.22 3.91 16 3 O -0.47 -6.50 17.07 5.53 0.09 -6.40 16 4 C -0.22 -2.35 5.87 -105.05 -0.62 -2.97 16 5 C -0.04 -0.36 9.42 -39.49 -0.37 -0.73 16 6 C -0.19 -2.08 8.74 -39.79 -0.35 -2.42 16 7 C 0.16 2.06 5.64 -83.86 -0.47 1.59 16 8 N -0.49 -6.89 4.73 -170.95 -0.81 -7.70 16 9 C 0.06 0.91 5.37 -3.77 -0.02 0.89 16 10 C 0.06 1.17 5.43 -3.77 -0.02 1.15 16 11 N -0.54 -11.03 4.70 -235.91 -1.11 -12.14 16 12 C 0.19 4.87 4.72 -4.97 -0.02 4.85 16 13 C -0.51 -13.84 8.47 -34.44 -0.29 -14.13 16 14 H 0.06 1.71 7.13 -52.48 -0.37 1.33 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 17 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C 0.05 0.90 5.61 -3.77 -0.02 0.88 16 22 C 0.05 0.74 4.28 -3.77 -0.02 0.72 16 23 C -0.16 -1.93 9.11 -39.79 -0.36 -2.29 16 24 C -0.03 -0.35 9.54 -39.49 -0.38 -0.73 16 25 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 26 H 0.09 0.44 8.09 -51.93 -0.42 0.02 16 27 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 28 H 0.13 0.79 7.03 -52.49 -0.37 0.42 16 29 H 0.13 1.28 5.77 -52.49 -0.30 0.98 16 30 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.08 1.04 6.79 -51.93 -0.35 0.69 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.84 6.79 -51.93 -0.35 1.49 16 34 H -0.01 -0.19 8.12 -51.93 -0.42 -0.62 16 35 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 39 H 0.08 0.92 7.15 -51.93 -0.37 0.55 16 40 H 0.06 0.78 7.56 -51.93 -0.39 0.38 16 41 H 0.13 1.44 7.16 -52.49 -0.38 1.06 16 42 H 0.13 1.44 7.64 -52.49 -0.40 1.04 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -31.07 338.69 -10.16 -41.22 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.21 Total: -2.03 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.94 Total: -8.77 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -1.18 Total: -45.25 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: 0.09 Total: -6.40 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.07 -10.16 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016553708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.957 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds