Wall clock time and date at job start Tue Mar 31 2020 02:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46961 * 2 1 4 4 C 1.50696 * 109.46799 * 120.00154 * 2 1 3 5 5 O 1.21278 * 120.00018 * 90.47409 * 4 2 1 6 6 N 1.34774 * 120.00088 * 270.46623 * 4 2 1 7 7 C 1.46505 * 120.00185 * 175.55525 * 6 4 2 8 8 C 1.46505 * 120.00085 * 355.55426 * 6 4 2 9 9 C 1.50700 * 109.47055 * 89.99683 * 8 6 4 10 10 H 1.08002 * 120.00109 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00325 * 179.72450 * 9 8 6 12 12 N 1.31513 * 119.99329 * 0.27875 * 11 9 8 13 13 Si 1.86796 * 120.00062 * 180.27701 * 11 9 8 14 14 H 1.48498 * 109.47331 * 60.00373 * 13 11 9 15 15 H 1.48501 * 109.47033 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47192 * 300.00122 * 13 11 9 17 17 N 1.46899 * 109.47182 * 240.00184 * 2 1 3 18 18 C 1.47446 * 111.00037 * 307.32517 * 17 2 1 19 19 C 1.54319 * 107.23286 * 123.25480 * 18 17 2 20 20 C 1.55142 * 103.01859 * 22.28596 * 19 18 17 21 21 F 1.39897 * 110.99129 * 82.43535 * 20 19 18 22 22 C 1.52999 * 110.98875 * 206.24982 * 20 19 18 23 23 O 1.42896 * 109.47654 * 298.54778 * 22 20 19 24 24 C 1.47853 * 111.00004 * 68.16752 * 17 2 1 25 25 H 1.09005 * 109.47217 * 307.62507 * 1 2 3 26 26 H 1.09004 * 109.46984 * 67.62165 * 1 2 3 27 27 H 1.09000 * 109.47373 * 187.61882 * 1 2 3 28 28 H 1.08995 * 109.46643 * 275.34804 * 7 6 4 29 29 H 1.08994 * 109.46893 * 35.34617 * 7 6 4 30 30 H 1.09006 * 109.47000 * 155.34937 * 7 6 4 31 31 H 1.09002 * 109.46963 * 330.00013 * 8 6 4 32 32 H 1.09003 * 109.47284 * 209.99616 * 8 6 4 33 33 H 0.97010 * 119.99316 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.88336 * 242.66450 * 18 17 2 35 35 H 1.08996 * 109.88479 * 3.85268 * 18 17 2 36 36 H 1.09004 * 110.70078 * 140.66199 * 19 18 17 37 37 H 1.09000 * 110.70862 * 263.72572 * 19 18 17 38 38 H 1.09001 * 109.46933 * 58.54754 * 22 20 19 39 39 H 1.08999 * 109.47247 * 178.54548 * 22 20 19 40 40 H 0.96700 * 114.00489 * 180.02562 * 23 22 20 41 41 H 1.08998 * 110.37094 * 332.46654 * 24 17 2 42 42 H 1.08999 * 110.37194 * 94.80705 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2304 5 8 2.2425 -1.9044 1.1979 6 7 2.2479 -0.0190 2.3670 7 6 2.6423 -0.7235 3.5895 8 6 2.0879 1.4373 2.3801 9 6 0.6653 1.7831 2.7373 10 1 -0.0482 0.9968 2.9353 11 6 0.2760 3.1034 2.8176 12 7 1.1449 4.0608 2.5769 13 14 -1.4854 3.5321 3.2680 14 1 -1.8006 2.9830 4.6112 15 1 -1.6465 5.0082 3.2859 16 1 -2.4097 2.9459 2.2643 17 7 2.0197 -0.6924 -1.1994 18 6 1.4089 -2.0286 -1.3246 19 6 0.7126 -2.0860 -2.7005 20 6 1.4488 -0.9867 -3.5109 21 9 2.6504 -1.4724 -4.0375 22 6 0.5526 -0.4300 -4.6190 23 8 0.2112 -1.4787 -5.5276 24 6 1.7123 0.0819 -2.4209 25 1 -0.3634 0.6274 0.8140 26 1 -0.3633 0.3913 -0.9503 27 1 -0.3634 -1.0186 0.1362 28 1 1.7524 -1.0920 4.0995 29 1 3.2879 -1.5633 3.3325 30 1 3.1802 -0.0392 4.2457 31 1 2.3223 1.8374 1.3936 32 1 2.7633 1.8704 3.1178 33 1 0.8710 4.9897 2.6330 34 1 2.1809 -2.7959 -1.2673 35 1 0.6760 -2.1769 -0.5316 36 1 0.8518 -3.0635 -3.1623 37 1 -0.3481 -1.8535 -2.6057 38 1 -0.3566 -0.0199 -4.1793 39 1 1.0837 0.3566 -5.1550 40 1 -0.3566 -1.1971 -6.2579 41 1 0.8242 0.6951 -2.2680 42 1 2.5620 0.7057 -2.6986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338628210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:54 Heat of formation + Delta-G solvation = -116.864199 kcal Electronic energy + Delta-G solvation = -24639.736155 eV Core-core repulsion = 20955.773498 eV Total energy + Delta-G solvation = -3683.962657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.49175 -39.88781 -38.04277 -36.78389 -34.94396 -32.86265 -32.55871 -29.65023 -29.03630 -27.73986 -26.30346 -25.28906 -23.33071 -22.85300 -20.85192 -20.43069 -18.04536 -17.62623 -16.79661 -16.63750 -16.21587 -16.06164 -15.23993 -14.95143 -14.56732 -14.56282 -14.44978 -14.13565 -13.64794 -13.25780 -13.10370 -12.88540 -12.52325 -12.41246 -12.11808 -11.91645 -11.81285 -11.53010 -11.49691 -11.42487 -11.01943 -10.96972 -10.89191 -10.76185 -10.53436 -10.49062 -10.27898 -10.15421 -9.80363 -8.90810 -8.58764 -8.02692 -7.70718 -6.24851 -4.32203 3.17031 3.23500 3.24952 3.36431 3.59799 3.89297 4.18995 4.26835 4.45893 4.48822 4.68628 4.80566 5.05758 5.07376 5.13443 5.27928 5.34292 5.49326 5.58091 5.63710 5.71287 5.86839 5.95340 6.05727 6.10140 6.15914 6.20490 6.25057 6.39220 6.46222 6.71065 6.74311 7.09998 7.16626 7.27155 7.30346 7.52668 7.69451 7.98968 8.31886 8.73142 9.03357 9.35090 10.81499 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.005003 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.606084 B = 5594.744237 C = 6516.588101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.062 3.938 3 H 0.114 0.886 4 C 0.529 3.471 5 O -0.566 6.566 6 N -0.600 5.600 7 C 0.097 3.903 8 C 0.235 3.765 9 C -0.537 4.537 10 H 0.061 0.939 11 C 0.066 3.934 12 N -0.889 5.889 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.508 5.508 18 C 0.051 3.949 19 C -0.154 4.154 20 C 0.113 3.887 21 F -0.190 7.190 22 C 0.065 3.935 23 O -0.564 6.564 24 C 0.026 3.974 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.381 0.619 41 H 0.072 0.928 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.715 -5.270 -10.916 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.049 4.049 3 H 0.132 0.868 4 C 0.316 3.684 5 O -0.446 6.446 6 N -0.331 5.331 7 C -0.046 4.046 8 C 0.115 3.885 9 C -0.575 4.575 10 H 0.080 0.920 11 C -0.137 4.137 12 N -0.527 5.527 13 Si 0.721 3.279 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 N -0.232 5.232 18 C -0.077 4.077 19 C -0.193 4.193 20 C 0.094 3.906 21 F -0.171 7.171 22 C -0.014 4.014 23 O -0.369 6.369 24 C -0.103 4.103 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.228 0.772 41 H 0.090 0.910 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.612 -6.072 -10.428 12.174 hybrid contribution -2.140 1.014 -0.089 2.369 sum -3.751 -5.058 -10.517 12.259 Atomic orbital electron populations 1.22424 0.94906 1.02771 1.03843 1.21808 0.94890 0.99438 0.88779 0.86827 1.20048 0.77182 0.86826 0.84352 1.90572 1.53633 1.15468 1.84925 1.48084 1.65957 1.10299 1.08749 1.21408 0.99426 0.96989 0.86822 1.19511 0.97293 0.73162 0.98505 1.21433 0.95574 0.92021 1.48497 0.92039 1.24934 0.97662 0.96193 0.94904 1.69913 1.34412 1.00116 1.48284 0.86621 0.84574 0.77373 0.79301 1.20099 1.21109 1.20101 1.63607 1.56772 1.02272 1.00544 1.22855 0.98271 0.91649 0.94884 1.23372 0.99879 0.99563 0.96460 1.21907 0.81371 0.95283 0.92021 1.92863 1.47192 1.89318 1.87682 1.22588 0.98041 0.89870 0.90898 1.86520 1.72689 1.36604 1.41118 1.23589 1.02305 0.95489 0.88880 0.88359 0.92549 0.92640 0.93669 0.92184 0.91596 0.94319 0.94533 0.92396 0.90045 0.90847 0.89566 0.90088 0.91622 0.92220 0.77182 0.91000 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.52 37.16 0.32 -2.77 16 2 C 0.06 1.15 2.15 -68.87 -0.15 1.00 16 3 H 0.11 2.22 5.79 -51.93 -0.30 1.92 16 4 C 0.53 11.16 6.72 -10.99 -0.07 11.08 16 5 O -0.57 -12.82 14.23 5.56 0.08 -12.74 16 6 N -0.60 -12.72 2.86 -182.95 -0.52 -13.24 16 7 C 0.10 1.80 10.45 59.85 0.63 2.43 16 8 C 0.24 5.43 4.97 -5.19 -0.03 5.40 16 9 C -0.54 -13.18 7.73 -34.44 -0.27 -13.45 16 10 H 0.06 1.53 7.48 -52.49 -0.39 1.14 16 11 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -23.53 13.29 55.43 0.74 -22.79 16 13 Si 0.89 19.63 29.54 -169.99 -5.02 14.60 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 N -0.51 -8.71 5.09 -224.68 -1.14 -9.86 16 18 C 0.05 0.83 4.75 -2.83 -0.01 0.82 16 19 C -0.15 -2.08 5.97 -24.91 -0.15 -2.22 16 20 C 0.11 1.51 1.38 -88.48 -0.12 1.39 16 21 F -0.19 -3.07 17.01 2.25 0.04 -3.03 16 22 C 0.06 0.66 6.33 37.16 0.24 0.89 16 23 O -0.56 -5.79 13.39 -35.23 -0.47 -6.26 16 24 C 0.03 0.36 5.74 -2.30 -0.01 0.35 16 25 H 0.10 1.91 5.98 -51.93 -0.31 1.60 16 26 H 0.06 0.82 6.26 -51.93 -0.33 0.50 16 27 H 0.05 0.93 6.22 -51.93 -0.32 0.60 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.08 7.53 -51.93 -0.39 0.69 16 30 H 0.07 1.12 7.83 -51.93 -0.41 0.71 16 31 H 0.04 0.92 5.88 -51.93 -0.31 0.62 16 32 H 0.04 0.89 7.86 -51.93 -0.41 0.48 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.08 1.46 8.13 -51.93 -0.42 1.03 16 35 H 0.07 1.27 4.83 -51.93 -0.25 1.02 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 38 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.38 1.95 9.12 45.56 0.42 2.36 16 41 H 0.07 0.91 5.90 -51.93 -0.31 0.60 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -30.03 332.71 -6.41 -36.45 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.39 Total: 5.38 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 0.27 Total: 6.48 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.93 Total: -45.89 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.39 Total: -19.00 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.03 -6.41 -36.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338628210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.418 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds