Wall clock time and date at job start Tue Mar 31 2020 02:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30446 * 119.99705 * 2 1 4 4 N 1.40095 * 120.00221 * 0.02562 * 3 2 1 5 5 C 1.34778 * 120.00198 * 179.97438 * 4 3 2 6 6 O 1.21920 * 119.99920 * 0.02562 * 5 4 3 7 7 C 1.41050 * 120.00524 * 179.97438 * 5 4 3 8 8 H 1.07999 * 119.99575 * 353.74094 * 7 5 4 9 9 C 1.40224 * 120.00342 * 173.73490 * 7 5 4 10 10 N 1.30589 * 119.99688 * 6.27356 * 9 7 5 11 11 Si 1.86794 * 120.00105 * 186.26870 * 9 7 5 12 12 H 1.48507 * 109.47078 * 94.98879 * 11 9 7 13 13 H 1.48498 * 109.47355 * 214.98788 * 11 9 7 14 14 H 1.48497 * 109.47537 * 334.98967 * 11 9 7 15 15 C 1.47046 * 119.99772 * 180.02562 * 2 1 3 16 16 C 1.40007 * 120.17805 * 180.02562 * 15 2 1 17 17 C 1.37829 * 119.81514 * 180.25677 * 16 15 2 18 18 C 1.38478 * 120.17640 * 359.46408 * 17 16 15 19 19 C 1.50703 * 119.81237 * 180.24282 * 18 17 16 20 20 C 1.53004 * 109.46736 * 240.27347 * 19 18 17 21 21 C 1.52997 * 109.47139 * 0.26885 * 19 18 17 22 22 C 1.52994 * 109.47382 * 120.27589 * 19 18 17 23 23 C 1.38474 * 120.37125 * 0.51299 * 18 17 16 24 24 C 1.37822 * 120.18434 * 359.77297 * 23 18 17 25 25 H 1.08997 * 109.47282 * 269.99931 * 1 2 3 26 26 H 1.08998 * 109.47013 * 30.00181 * 1 2 3 27 27 H 1.08996 * 109.47095 * 149.99725 * 1 2 3 28 28 H 0.96999 * 120.00169 * 359.97438 * 4 3 2 29 29 H 0.96999 * 119.99460 * 179.97438 * 10 9 7 30 30 H 1.08000 * 120.09509 * 359.97438 * 16 15 2 31 31 H 1.08001 * 119.91217 * 179.72236 * 17 16 15 32 32 H 1.08996 * 109.47149 * 60.00372 * 20 19 18 33 33 H 1.09001 * 109.47218 * 179.97438 * 20 19 18 34 34 H 1.08995 * 109.47348 * 299.99981 * 20 19 18 35 35 H 1.09008 * 109.47220 * 60.00630 * 21 19 18 36 36 H 1.09001 * 109.47204 * 180.02562 * 21 19 18 37 37 H 1.08996 * 109.47354 * 300.00586 * 21 19 18 38 38 H 1.08995 * 109.47555 * 59.99517 * 22 19 18 39 39 H 1.09001 * 109.47287 * 180.02562 * 22 19 18 40 40 H 1.09002 * 109.47302 * 299.99373 * 22 19 18 41 41 H 1.07997 * 119.90801 * 179.74420 * 23 18 17 42 42 H 1.08002 * 120.09638 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1592 1.1297 0.0000 4 7 1.4587 2.3430 0.0005 5 6 2.1326 3.5102 0.0011 6 8 3.3518 3.5103 0.0006 7 6 1.4274 4.7318 0.0011 8 1 0.3523 4.7346 -0.1013 9 6 2.1222 5.9425 0.1341 10 7 3.4280 5.9492 0.1348 11 14 1.1798 7.5457 0.3102 12 1 1.0351 7.8792 1.7501 13 1 1.9204 8.6334 -0.3778 14 1 -0.1654 7.3990 -0.3014 15 6 2.2422 -1.2735 -0.0006 16 6 3.6423 -1.2779 0.0000 17 6 4.3238 -2.4759 -0.0059 18 6 3.6275 -3.6729 -0.0012 19 6 4.3811 -4.9780 -0.0021 20 6 4.0115 -5.7792 -1.2521 21 6 5.8853 -4.6984 -0.0019 22 6 4.0114 -5.7813 1.2463 23 6 2.2428 -3.6773 -0.0012 24 6 1.5460 -2.4882 -0.0012 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 0.4888 2.3430 0.0005 29 1 3.9086 6.7868 0.2265 30 1 4.1868 -0.3452 0.0004 31 1 5.4038 -2.4811 -0.0101 32 1 4.2749 -5.2070 -2.1416 33 1 4.5568 -6.7230 -1.2531 34 1 2.9399 -5.9784 -1.2523 35 1 6.1487 -4.1275 0.8886 36 1 6.4303 -5.6424 -0.0031 37 1 6.1486 -4.1261 -0.8914 38 1 2.9398 -5.9805 1.2462 39 1 4.5567 -6.7251 1.2459 40 1 4.2747 -5.2105 2.1369 41 1 1.7073 -4.6152 -0.0016 42 1 0.4660 -2.4933 -0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408720249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:23 Heat of formation + Delta-G solvation = 8.845241 kcal Electronic energy + Delta-G solvation = -21853.216545 eV Core-core repulsion = 18605.474284 eV Total energy + Delta-G solvation = -3247.742262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.77119 -37.91582 -36.73364 -35.20537 -32.73146 -31.70661 -31.05566 -28.95932 -28.25211 -27.39531 -27.34868 -26.30032 -23.41483 -21.92241 -20.68513 -19.37282 -18.67102 -17.84456 -16.35009 -15.76534 -15.55503 -14.76466 -14.48992 -14.40613 -14.38675 -13.97147 -13.85769 -13.55148 -13.26415 -12.78648 -12.76293 -12.62317 -12.35621 -12.13688 -12.06647 -11.82317 -11.57539 -11.40886 -11.29105 -11.24324 -11.09120 -10.69328 -10.61628 -10.51867 -10.47421 -10.35317 -9.39260 -9.04430 -8.72725 -8.63543 -7.76179 -7.17656 -6.40892 -4.93906 1.19461 1.65659 2.85999 3.05506 3.10689 3.14913 3.74824 4.09342 4.11467 4.45220 4.52264 4.65110 4.88252 4.92491 5.13545 5.18894 5.20989 5.42354 5.43877 5.45421 5.58744 5.61442 5.66499 5.71200 5.72222 5.76447 5.78301 5.83893 5.87829 5.93222 6.08553 6.14074 6.16297 6.27017 6.33179 6.54823 6.75961 6.84504 6.98550 7.20993 7.21287 7.83531 8.00100 8.70304 8.76795 9.30100 10.39212 10.64510 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.035585 B = 0.002852 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.663275 B = 9815.307717 C =10400.821711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.039 3.961 3 N -0.186 5.186 4 N -0.587 5.587 5 C 0.558 3.442 6 O -0.553 6.553 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.088 3.912 10 N -0.745 5.745 11 Si 0.917 3.083 12 H -0.270 1.270 13 H -0.276 1.276 14 H -0.262 1.262 15 C -0.014 4.014 16 C -0.089 4.089 17 C -0.121 4.121 18 C -0.078 4.078 19 C -0.029 4.029 20 C -0.137 4.137 21 C -0.145 4.145 22 C -0.137 4.137 23 C -0.119 4.119 24 C -0.110 4.110 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.370 0.630 29 H 0.274 0.726 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.118 0.882 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 -20.472 0.045 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 N 0.004 4.996 4 N -0.334 5.334 5 C 0.366 3.634 6 O -0.433 6.433 7 C -0.575 4.575 8 H 0.089 0.911 9 C -0.135 4.135 10 N -0.372 5.372 11 Si 0.741 3.259 12 H -0.195 1.195 13 H -0.201 1.201 14 H -0.186 1.186 15 C -0.016 4.016 16 C -0.109 4.109 17 C -0.139 4.139 18 C -0.080 4.080 19 C -0.029 4.029 20 C -0.195 4.195 21 C -0.202 4.202 22 C -0.195 4.195 23 C -0.137 4.137 24 C -0.130 4.130 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.207 0.793 29 H 0.085 0.915 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.136 0.864 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.073 -19.690 0.046 19.719 hybrid contribution -1.883 0.644 0.095 1.993 sum -2.956 -19.046 0.141 19.274 Atomic orbital electron populations 1.21088 0.93125 1.02981 1.02581 1.22837 0.92954 0.91549 1.07599 1.74873 1.26973 0.92458 1.05338 1.48083 1.07656 1.01782 1.75891 1.16904 0.87836 0.80397 0.78250 1.90702 1.13511 1.85361 1.53675 1.19813 0.94909 0.89699 1.53044 0.91094 1.25766 0.94679 1.00557 0.92525 1.70011 1.07551 1.27942 1.31715 0.86205 0.80211 0.80445 0.79084 1.19483 1.20114 1.18624 1.18347 0.92730 0.90329 1.00173 1.21547 0.93541 0.98678 0.97178 1.21111 1.00061 0.91602 1.01158 1.19849 0.93527 0.94051 1.00541 1.19476 0.94909 0.92557 0.95936 1.21884 1.01411 0.99254 0.96906 1.21971 0.94404 1.01529 1.02296 1.21881 1.01410 0.99241 0.96919 1.20726 0.93500 0.97433 1.01997 1.21201 0.99590 0.91293 1.00927 0.90999 0.91664 0.90801 0.79331 0.91486 0.84701 0.85735 0.92456 0.92629 0.92485 0.92143 0.92639 0.92145 0.92484 0.92630 0.92456 0.86430 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.04 36.01 0.33 -1.62 16 2 C 0.04 0.71 7.11 -79.61 -0.57 0.15 16 3 N -0.19 -4.30 10.19 35.11 0.36 -3.95 16 4 N -0.59 -14.36 6.11 28.99 0.18 -14.18 16 5 C 0.56 16.45 7.66 -15.19 -0.12 16.33 16 6 O -0.55 -18.67 15.23 4.99 0.08 -18.59 16 7 C -0.54 -15.03 9.27 -37.77 -0.35 -15.38 16 8 H 0.07 1.78 7.86 -52.49 -0.41 1.36 16 9 C 0.09 2.41 5.49 -17.33 -0.10 2.31 16 10 N -0.75 -21.96 11.74 55.56 0.65 -21.30 16 11 Si 0.92 19.47 29.56 -169.99 -5.03 14.44 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 14 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 15 C -0.01 -0.22 5.88 -105.00 -0.62 -0.84 16 16 C -0.09 -1.48 9.59 -39.07 -0.37 -1.86 16 17 C -0.12 -1.66 8.95 -39.64 -0.35 -2.01 16 18 C -0.08 -0.93 4.78 -104.45 -0.50 -1.43 16 19 C -0.03 -0.27 0.85 -155.66 -0.13 -0.40 16 20 C -0.14 -1.13 8.29 37.16 0.31 -0.82 16 21 C -0.14 -1.27 7.13 37.16 0.26 -1.00 16 22 C -0.14 -1.13 8.28 37.15 0.31 -0.82 16 23 C -0.12 -1.37 8.68 -39.65 -0.34 -1.71 16 24 C -0.11 -1.41 9.37 -39.07 -0.37 -1.78 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.93 6.36 -51.93 -0.33 0.60 16 27 H 0.07 0.83 6.47 -51.93 -0.34 0.50 16 28 H 0.37 7.68 6.41 -182.60 -1.17 6.51 16 29 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 30 H 0.14 2.56 7.55 -52.49 -0.40 2.16 16 31 H 0.12 1.50 5.87 -52.49 -0.31 1.20 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.45 7.37 -51.93 -0.38 0.06 16 35 H 0.06 0.54 7.52 -51.92 -0.39 0.15 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.54 7.49 -51.93 -0.39 0.15 16 38 H 0.06 0.45 7.37 -51.93 -0.38 0.06 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.12 1.08 7.07 -52.49 -0.37 0.71 16 42 H 0.12 1.31 6.36 -52.49 -0.33 0.97 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -34.76 345.35 -8.04 -42.80 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.87 Total: 6.45 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.61 Total: -10.88 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 1.19 Total: -39.43 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.08 Total: -18.59 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.76 -8.04 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408720249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.648 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds