Wall clock time and date at job start Tue Mar 31 2020 02:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30446 * 119.99705 * 2 1 4 4 N 1.40095 * 120.00221 * 0.02562 * 3 2 1 5 5 C 1.34778 * 120.00198 * 179.97438 * 4 3 2 6 6 O 1.21920 * 119.99920 * 0.02562 * 5 4 3 7 7 C 1.41050 * 120.00524 * 179.97438 * 5 4 3 8 8 H 1.07999 * 119.99575 * 353.74094 * 7 5 4 9 9 C 1.40224 * 120.00342 * 173.73490 * 7 5 4 10 10 N 1.30589 * 119.99688 * 6.27356 * 9 7 5 11 11 Si 1.86794 * 120.00105 * 186.26870 * 9 7 5 12 12 H 1.48507 * 109.47078 * 94.98879 * 11 9 7 13 13 H 1.48498 * 109.47355 * 214.98788 * 11 9 7 14 14 H 1.48497 * 109.47537 * 334.98967 * 11 9 7 15 15 C 1.47046 * 119.99772 * 180.02562 * 2 1 3 16 16 C 1.40007 * 120.17805 * 180.02562 * 15 2 1 17 17 C 1.37829 * 119.81514 * 180.25677 * 16 15 2 18 18 C 1.38478 * 120.17640 * 359.46408 * 17 16 15 19 19 C 1.50703 * 119.81237 * 180.24282 * 18 17 16 20 20 C 1.53004 * 109.46736 * 240.27347 * 19 18 17 21 21 C 1.52997 * 109.47139 * 0.26885 * 19 18 17 22 22 C 1.52994 * 109.47382 * 120.27589 * 19 18 17 23 23 C 1.38474 * 120.37125 * 0.51299 * 18 17 16 24 24 C 1.37822 * 120.18434 * 359.77297 * 23 18 17 25 25 H 1.08997 * 109.47282 * 269.99931 * 1 2 3 26 26 H 1.08998 * 109.47013 * 30.00181 * 1 2 3 27 27 H 1.08996 * 109.47095 * 149.99725 * 1 2 3 28 28 H 0.96999 * 120.00169 * 359.97438 * 4 3 2 29 29 H 0.96999 * 119.99460 * 179.97438 * 10 9 7 30 30 H 1.08000 * 120.09509 * 359.97438 * 16 15 2 31 31 H 1.08001 * 119.91217 * 179.72236 * 17 16 15 32 32 H 1.08996 * 109.47149 * 60.00372 * 20 19 18 33 33 H 1.09001 * 109.47218 * 179.97438 * 20 19 18 34 34 H 1.08995 * 109.47348 * 299.99981 * 20 19 18 35 35 H 1.09008 * 109.47220 * 60.00630 * 21 19 18 36 36 H 1.09001 * 109.47204 * 180.02562 * 21 19 18 37 37 H 1.08996 * 109.47354 * 300.00586 * 21 19 18 38 38 H 1.08995 * 109.47555 * 59.99517 * 22 19 18 39 39 H 1.09001 * 109.47287 * 180.02562 * 22 19 18 40 40 H 1.09002 * 109.47302 * 299.99373 * 22 19 18 41 41 H 1.07997 * 119.90801 * 179.74420 * 23 18 17 42 42 H 1.08002 * 120.09638 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1592 1.1297 0.0000 4 7 1.4587 2.3430 0.0005 5 6 2.1326 3.5102 0.0011 6 8 3.3518 3.5103 0.0006 7 6 1.4274 4.7318 0.0011 8 1 0.3523 4.7346 -0.1013 9 6 2.1222 5.9425 0.1341 10 7 3.4280 5.9492 0.1348 11 14 1.1798 7.5457 0.3102 12 1 1.0351 7.8792 1.7501 13 1 1.9204 8.6334 -0.3778 14 1 -0.1654 7.3990 -0.3014 15 6 2.2422 -1.2735 -0.0006 16 6 3.6423 -1.2779 0.0000 17 6 4.3238 -2.4759 -0.0059 18 6 3.6275 -3.6729 -0.0012 19 6 4.3811 -4.9780 -0.0021 20 6 4.0115 -5.7792 -1.2521 21 6 5.8853 -4.6984 -0.0019 22 6 4.0114 -5.7813 1.2463 23 6 2.2428 -3.6773 -0.0012 24 6 1.5460 -2.4882 -0.0012 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 0.4888 2.3430 0.0005 29 1 3.9086 6.7868 0.2265 30 1 4.1868 -0.3452 0.0004 31 1 5.4038 -2.4811 -0.0101 32 1 4.2749 -5.2070 -2.1416 33 1 4.5568 -6.7230 -1.2531 34 1 2.9399 -5.9784 -1.2523 35 1 6.1487 -4.1275 0.8886 36 1 6.4303 -5.6424 -0.0031 37 1 6.1486 -4.1261 -0.8914 38 1 2.9398 -5.9805 1.2462 39 1 4.5567 -6.7251 1.2459 40 1 4.2747 -5.2105 2.1369 41 1 1.7073 -4.6152 -0.0016 42 1 0.4660 -2.4933 -0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408720249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:22 Heat of formation + Delta-G solvation = -13.829684 kcal Electronic energy + Delta-G solvation = -21854.199804 eV Core-core repulsion = 18605.474284 eV Total energy + Delta-G solvation = -3248.725520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.82527 -39.71937 -38.13790 -36.61879 -34.78394 -33.38460 -32.17456 -30.42901 -29.51060 -28.34705 -28.01878 -28.01131 -24.63899 -23.05309 -22.39355 -20.66098 -20.00551 -19.55866 -17.85132 -17.48811 -16.97080 -16.03597 -15.77423 -15.56116 -15.52987 -15.25499 -15.08873 -14.74662 -14.49929 -14.46475 -14.22791 -13.56025 -13.39118 -13.34226 -12.95141 -12.93832 -12.88198 -12.71066 -12.54300 -12.48973 -12.28229 -12.25635 -12.01968 -11.77399 -11.52453 -11.35515 -11.01927 -10.86171 -10.06946 -10.01276 -9.82667 -8.82703 -8.45658 -7.10846 -0.03808 0.55050 1.35706 1.37254 1.54536 1.56749 2.06854 2.34844 2.41186 2.96597 3.58558 3.60535 3.73539 3.84717 4.08759 4.17123 4.17539 4.24061 4.42255 4.47001 4.56321 4.63980 4.66916 4.84622 4.85801 4.94444 4.96249 5.02378 5.07516 5.09481 5.13933 5.16978 5.21391 5.27526 5.35333 5.41967 5.51854 5.61349 5.71556 5.75962 5.79873 6.01787 6.10381 6.65537 6.95195 7.44203 8.39566 8.56542 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.035585 B = 0.002852 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.663275 B = 9815.307717 C =10400.821711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 N -0.270 5.270 4 N -0.593 5.593 5 C 0.543 3.457 6 O -0.618 6.618 7 C -0.563 4.563 8 H 0.095 0.905 9 C 0.029 3.971 10 N -0.803 5.803 11 Si 1.012 2.988 12 H -0.260 1.260 13 H -0.268 1.268 14 H -0.243 1.243 15 C -0.055 4.055 16 C -0.111 4.111 17 C -0.132 4.132 18 C -0.063 4.063 19 C -0.030 4.030 20 C -0.136 4.136 21 C -0.148 4.148 22 C -0.136 4.136 23 C -0.114 4.114 24 C -0.089 4.089 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.383 0.617 29 H 0.282 0.718 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.157 0.843 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 -23.405 0.161 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 N -0.078 5.078 4 N -0.340 5.340 5 C 0.352 3.648 6 O -0.504 6.504 7 C -0.599 4.599 8 H 0.113 0.887 9 C -0.190 4.190 10 N -0.430 5.430 11 Si 0.829 3.171 12 H -0.184 1.184 13 H -0.193 1.193 14 H -0.166 1.166 15 C -0.057 4.057 16 C -0.131 4.131 17 C -0.149 4.149 18 C -0.064 4.064 19 C -0.030 4.030 20 C -0.193 4.193 21 C -0.205 4.205 22 C -0.193 4.193 23 C -0.132 4.132 24 C -0.109 4.109 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.223 0.777 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.149 0.851 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.174 0.826 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.089 -22.680 0.158 23.046 hybrid contribution -0.922 1.099 0.052 1.435 sum -5.011 -21.582 0.210 22.157 Atomic orbital electron populations 1.21262 0.89698 1.04701 1.04367 1.23755 0.95604 0.90998 1.00492 1.74980 1.28168 0.93040 1.11659 1.47290 1.07863 1.01731 1.77080 1.17340 0.87373 0.82318 0.77722 1.90632 1.16006 1.86878 1.56843 1.20372 0.96168 0.90054 1.53313 0.88669 1.27201 0.95605 1.05237 0.90929 1.70184 1.10264 1.29707 1.32890 0.84812 0.78870 0.73839 0.79555 1.18402 1.19286 1.16600 1.18523 0.92550 0.90872 1.03799 1.21413 0.94394 0.98228 0.99092 1.21222 1.00631 0.91469 1.01625 1.20279 0.94293 0.94420 0.97435 1.19582 0.94602 0.91338 0.97448 1.21882 1.02384 0.99557 0.95473 1.21996 0.94634 1.02264 1.01586 1.21880 1.02383 0.99544 0.95489 1.21180 0.93304 0.98481 1.00235 1.21540 1.01179 0.89958 0.98259 0.88946 0.92045 0.86897 0.77738 0.90809 0.88885 0.85106 0.93489 0.90937 0.91391 0.92935 0.90852 0.92924 0.91392 0.90935 0.93498 0.82565 0.82474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.04 71.24 0.64 -3.02 16 2 C 0.08 2.98 7.11 45.08 0.32 3.30 16 3 N -0.27 -13.38 10.19 -42.82 -0.44 -13.82 16 4 N -0.59 -30.76 6.11 -180.31 -1.10 -31.86 16 5 C 0.54 34.19 7.66 84.93 0.65 34.84 16 6 O -0.62 -45.22 15.23 -5.06 -0.08 -45.30 16 7 C -0.56 -32.63 9.27 23.44 0.22 -32.41 16 8 H 0.10 4.82 7.86 -2.91 -0.02 4.80 16 9 C 0.03 1.60 5.49 85.36 0.47 2.07 16 10 N -0.80 -49.80 11.74 21.87 0.26 -49.55 16 11 Si 1.01 40.26 29.56 68.60 2.03 42.28 16 12 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 13 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 14 H -0.24 -8.83 7.11 99.48 0.71 -8.12 16 15 C -0.06 -1.78 5.88 -20.11 -0.12 -1.90 16 16 C -0.11 -3.92 9.59 22.60 0.22 -3.71 16 17 C -0.13 -3.66 8.95 22.23 0.20 -3.46 16 18 C -0.06 -1.35 4.78 -19.75 -0.09 -1.44 16 19 C -0.03 -0.46 0.85 -52.93 -0.05 -0.51 16 20 C -0.14 -1.72 8.29 71.98 0.60 -1.13 16 21 C -0.15 -2.34 7.13 71.98 0.51 -1.83 16 22 C -0.14 -1.73 8.28 71.98 0.60 -1.13 16 23 C -0.11 -2.17 8.68 22.23 0.19 -1.97 16 24 C -0.09 -2.00 9.37 22.60 0.21 -1.78 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 1.68 6.36 -2.39 -0.02 1.67 16 27 H 0.11 2.04 6.47 -2.39 -0.02 2.03 16 28 H 0.38 16.56 6.41 -213.32 -1.37 15.19 16 29 H 0.28 15.56 8.29 -92.71 -0.77 14.79 16 30 H 0.09 4.03 7.55 -2.91 -0.02 4.01 16 31 H 0.13 3.34 5.87 -2.91 -0.02 3.32 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.73 7.37 -2.39 -0.02 0.71 16 35 H 0.05 0.91 7.52 -2.38 -0.02 0.89 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 37 H 0.05 0.91 7.49 -2.39 -0.02 0.89 16 38 H 0.07 0.73 7.37 -2.39 -0.02 0.71 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.16 1.87 7.07 -2.91 -0.02 1.85 16 42 H 0.16 2.44 6.36 -2.91 -0.02 2.42 16 Total: -1.00 -84.99 345.35 4.91 -80.08 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: -0.33 Total: 32.25 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.57 Total: -14.08 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -1.28 Total: -95.23 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.08 Total: -45.30 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.28 kcal Total: -84.99 4.91 -80.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408720249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.253 kcal (2) G-P(sol) polarization free energy of solvation -84.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds