Wall clock time and date at job start Tue Mar 31 2020 02:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 O 1.42902 * 109.46830 * 64.99780 * 15 14 13 17 17 C 1.42897 * 114.00103 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47585 * 180.02562 * 17 16 15 19 19 H 1.09005 * 109.82327 * 305.57042 * 18 17 16 20 20 C 1.54371 * 109.83378 * 184.58625 * 18 17 16 21 21 C 1.55313 * 102.25460 * 219.12798 * 20 18 17 22 22 C 1.54953 * 100.93944 * 34.13149 * 21 20 18 23 23 O 1.43240 * 109.82732 * 66.45013 * 18 17 16 24 24 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 26 26 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 27 27 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 28 28 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 29 29 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 30 30 H 1.08993 * 109.47543 * 184.99779 * 15 14 13 31 31 H 1.09004 * 109.47389 * 305.00423 * 15 14 13 32 32 H 1.09004 * 109.47246 * 299.99994 * 17 16 15 33 33 H 1.08999 * 109.47208 * 59.99958 * 17 16 15 34 34 H 1.09003 * 110.84965 * 337.31768 * 20 18 17 35 35 H 1.09000 * 110.85228 * 100.94223 * 20 18 17 36 36 H 1.08997 * 111.12341 * 276.21875 * 21 20 18 37 37 H 1.08999 * 111.16324 * 152.06704 * 21 20 18 38 38 H 1.08991 * 110.31137 * 204.64068 * 22 21 20 39 39 H 1.09006 * 110.38765 * 82.51557 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 8 4.2330 -8.5749 1.1830 17 6 5.3551 -9.4542 1.2806 18 6 6.0585 -9.2368 2.6218 19 1 6.3144 -8.1836 2.7385 20 6 7.3373 -10.0989 2.6884 21 6 7.3293 -10.5872 4.1628 22 6 5.8076 -10.7330 4.4160 23 8 5.2015 -9.6501 3.6925 24 1 -0.4849 0.8401 0.0004 25 1 3.1244 -3.7267 -0.9039 26 1 3.1244 -3.7361 0.8761 27 1 3.8007 -6.1835 -0.0260 28 1 1.7212 -7.8796 0.8553 29 1 1.7219 -7.8705 -0.9248 30 1 3.1224 -9.7158 -0.1336 31 1 4.1595 -8.4762 -0.8794 32 1 5.0142 -10.4874 1.2129 33 1 6.0508 -9.2472 0.4673 34 1 7.2732 -10.9419 2.0003 35 1 8.2225 -9.4965 2.4842 36 1 7.7681 -9.8416 4.8258 37 1 7.8378 -11.5461 4.2626 38 1 5.5910 -10.6449 5.4805 39 1 5.4492 -11.6896 4.0355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115420761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:26 Heat of formation + Delta-G solvation = -136.916429 kcal Electronic energy + Delta-G solvation = -20020.508962 eV Core-core repulsion = 16668.338195 eV Total energy + Delta-G solvation = -3352.170767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.96132 -39.12549 -37.82689 -34.45108 -32.60649 -32.37881 -31.32020 -30.04903 -27.99212 -25.67445 -25.41105 -22.70842 -22.13842 -21.44951 -20.32443 -17.80521 -17.56415 -16.94329 -16.50381 -16.31278 -16.06604 -15.50658 -14.97036 -14.82521 -14.75422 -14.15140 -13.93879 -13.66785 -13.19044 -13.03577 -12.75490 -12.59254 -12.28042 -12.17579 -11.84037 -11.61118 -11.56191 -11.40930 -11.26871 -10.99997 -10.99443 -10.72513 -9.93728 -9.82831 -9.77069 -9.30330 -9.01504 -8.77398 -8.17533 -6.43943 -6.16603 -3.86611 3.10417 3.18189 3.23358 3.27055 3.31075 3.36538 3.53162 3.82743 4.00709 4.25423 4.34248 4.44543 4.68359 4.73398 4.84937 4.88053 4.97120 5.04004 5.11135 5.16776 5.18193 5.21908 5.27837 5.30449 5.37666 5.51073 5.60872 5.70514 5.72778 5.93523 5.98561 6.22373 6.66248 6.71331 6.94328 7.64121 7.82958 8.40058 8.72043 9.28381 10.90814 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.002582 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.482058 B =10842.193748 C =11589.072402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.521 6.521 13 N -0.733 5.733 14 C 0.125 3.875 15 C 0.051 3.949 16 O -0.373 6.373 17 C 0.053 3.947 18 C 0.082 3.918 19 H 0.090 0.910 20 C -0.149 4.149 21 C -0.156 4.156 22 C 0.046 3.954 23 O -0.366 6.366 24 H 0.268 0.732 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.400 0.600 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.208 -23.886 3.469 29.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.395 6.395 13 N -0.388 5.388 14 C 0.000 4.000 15 C -0.026 4.026 16 O -0.292 6.292 17 C -0.024 4.024 18 C 0.024 3.976 19 H 0.108 0.892 20 C -0.187 4.187 21 C -0.194 4.194 22 C -0.031 4.031 23 O -0.285 6.285 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.234 0.766 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.770 -23.905 3.655 28.336 hybrid contribution 2.770 0.954 -0.289 2.944 sum 17.540 -22.951 3.366 29.081 Atomic orbital electron populations 1.70018 1.05939 1.27490 1.46892 1.24997 0.95034 0.99003 0.94607 0.86222 0.79216 0.81263 0.78764 1.19981 1.20843 1.19952 1.22837 0.94880 0.91717 1.58888 0.91000 1.85383 1.05067 0.96263 1.96705 1.23519 1.06460 0.95424 1.04893 1.20288 0.86504 0.86309 0.75145 1.90694 1.15391 1.85647 1.47800 1.45902 1.10044 1.05209 1.77657 1.21285 0.94808 0.80750 1.03115 1.22792 0.93703 0.99127 0.86988 1.88032 1.42190 1.60966 1.38032 1.22927 0.88702 0.93914 0.96898 1.22778 0.88655 0.99799 0.86393 0.89175 1.23113 0.97857 1.00160 0.97529 1.23277 0.97273 1.02593 0.96248 1.23421 0.91487 0.90770 0.97416 1.88588 1.44071 1.51534 1.44274 0.92175 0.89313 0.89193 0.76629 0.90673 0.90130 0.91856 0.92677 0.92989 0.92326 0.90271 0.89480 0.90082 0.89786 0.89600 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.64 13.22 55.49 0.73 -25.90 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.53 -15.58 9.50 30.94 0.29 -15.28 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.22 6.16 36.00 0.22 -3.00 16 11 C 0.53 10.56 7.85 -10.99 -0.09 10.47 16 12 O -0.52 -12.42 15.86 5.56 0.09 -12.33 16 13 N -0.73 -10.81 5.50 -60.29 -0.33 -11.14 16 14 C 0.12 1.58 6.06 -4.04 -0.02 1.55 16 15 C 0.05 0.48 6.07 37.16 0.23 0.70 16 16 O -0.37 -4.24 10.27 -37.80 -0.39 -4.63 16 17 C 0.05 0.44 5.47 37.16 0.20 0.64 16 18 C 0.08 0.70 3.81 -26.01 -0.10 0.60 16 19 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.15 -0.79 6.54 -24.79 -0.16 -0.95 16 21 C -0.16 -0.80 7.16 -24.47 -0.18 -0.98 16 22 C 0.05 0.33 7.78 38.19 0.30 0.63 16 23 O -0.37 -4.05 11.00 -37.80 -0.42 -4.47 16 24 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 26 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 27 H 0.40 4.89 8.47 -40.82 -0.35 4.54 16 28 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.34 7.85 -51.93 -0.41 -0.07 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -36.61 345.62 -7.96 -44.57 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.22 Total: -0.54 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 0.60 Total: -3.60 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.40 Total: -37.04 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.72 Total: -21.42 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.61 -7.96 -44.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115420761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.344 kcal (2) G-P(sol) polarization free energy of solvation -36.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds