Wall clock time and date at job start Tue Mar 31 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47366 * 179.97438 * 15 14 13 17 17 O 1.42904 * 109.46916 * 180.02562 * 16 15 14 18 18 C 1.42906 * 113.99823 * 180.02562 * 17 16 15 19 19 H 1.08993 * 110.45239 * 330.69620 * 18 17 16 20 20 C 1.54510 * 110.50704 * 208.09541 * 18 17 16 21 21 C 1.54487 * 104.06111 * 241.35047 * 20 18 17 22 22 O 1.44428 * 104.79958 * 23.98285 * 21 20 18 23 23 C 1.44784 * 105.29685 * 319.44978 * 22 21 20 24 24 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 26 26 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 27 27 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 28 28 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 29 29 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 30 30 H 1.08999 * 109.47369 * 300.00444 * 15 14 13 31 31 H 1.09009 * 109.46793 * 59.99447 * 15 14 13 32 32 H 1.08994 * 109.47451 * 300.00251 * 16 15 14 33 33 H 1.09003 * 109.47234 * 60.00586 * 16 15 14 34 34 H 1.08993 * 110.51546 * 359.97438 * 20 18 17 35 35 H 1.09000 * 110.50870 * 122.70934 * 20 18 17 36 36 H 1.09000 * 110.36819 * 142.80996 * 21 20 18 37 37 H 1.08996 * 110.37088 * 265.15420 * 21 20 18 38 38 H 1.09005 * 110.43146 * 281.78189 * 23 22 21 39 39 H 1.08995 * 110.48914 * 159.32775 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 6 2.9656 -10.1313 -0.0457 17 8 4.0603 -11.0499 -0.0498 18 6 3.6663 -12.4235 -0.0570 19 1 2.7050 -12.5467 0.4418 20 6 4.7440 -13.2992 0.6207 21 6 5.2027 -14.2619 -0.4972 22 8 4.8897 -13.5740 -1.7279 23 6 3.5979 -12.9595 -1.5042 24 1 -0.4849 0.8401 0.0004 25 1 3.1244 -3.7267 -0.9039 26 1 3.1244 -3.7361 0.8761 27 1 3.8007 -6.1835 -0.0260 28 1 1.7212 -7.8796 0.8553 29 1 1.7219 -7.8705 -0.9248 30 1 4.1109 -8.5339 -0.9278 31 1 4.1108 -8.5431 0.8521 32 1 2.3571 -10.2957 0.8436 33 1 2.3568 -10.2871 -0.9363 34 1 5.5773 -12.6846 0.9607 35 1 4.3148 -13.8572 1.4529 36 1 6.2753 -14.4426 -0.4257 37 1 4.6538 -15.2016 -0.4375 38 1 2.8032 -13.6997 -1.5974 39 1 3.4387 -12.1402 -2.2051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150756374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:23 Heat of formation + Delta-G solvation = -138.367674 kcal Electronic energy + Delta-G solvation = -19587.771486 eV Core-core repulsion = 16235.537788 eV Total energy + Delta-G solvation = -3352.233698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08571 -39.19431 -37.67246 -35.27263 -32.47992 -32.41754 -31.32772 -29.34958 -28.85269 -25.62830 -25.16245 -23.29745 -22.05980 -21.47735 -20.33156 -17.86150 -17.67132 -16.93265 -16.53859 -16.23337 -16.06953 -15.75178 -15.29275 -15.03626 -14.79966 -14.24056 -14.00628 -13.79502 -13.22811 -13.14681 -12.63875 -12.57781 -12.44175 -12.03295 -11.90701 -11.85295 -11.70182 -11.28190 -11.21554 -11.04272 -11.03304 -10.76579 -10.46719 -9.82457 -9.81486 -9.42933 -9.06150 -8.91209 -8.24130 -6.49970 -6.21255 -3.91980 2.87109 3.08812 3.17894 3.24001 3.28567 3.35953 3.47387 3.76869 4.05012 4.20917 4.33143 4.49819 4.58861 4.62423 4.71882 4.74153 4.94783 4.98124 5.13755 5.14546 5.17471 5.19990 5.22764 5.24970 5.37064 5.44570 5.52695 5.64728 5.81614 5.90829 5.92592 6.14324 6.23649 6.57859 6.80272 7.59657 7.69124 8.35410 8.59770 9.23906 10.86118 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.059396 B = 0.001958 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.299850 B =14293.668460 C =14499.015115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.739 5.739 14 C 0.124 3.876 15 C -0.130 4.130 16 C 0.063 3.937 17 O -0.372 6.372 18 C 0.056 3.944 19 H 0.079 0.921 20 C -0.155 4.155 21 C 0.044 3.956 22 O -0.370 6.370 23 C 0.023 3.977 24 H 0.269 0.731 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.399 0.601 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 -27.128 0.835 28.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.394 5.394 14 C 0.000 4.000 15 C -0.167 4.167 16 C -0.014 4.014 17 O -0.291 6.291 18 C -0.003 4.003 19 H 0.097 0.903 20 C -0.192 4.192 21 C -0.033 4.033 22 O -0.289 6.289 23 C -0.055 4.055 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.233 0.767 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.005 -27.284 0.639 28.441 hybrid contribution 2.017 1.232 0.213 2.374 sum 10.022 -26.052 0.852 27.926 Atomic orbital electron populations 1.70012 1.05950 1.27559 1.46778 1.24998 0.95039 0.99031 0.94525 0.86217 0.79228 0.81209 0.78804 1.19932 1.20810 1.19941 1.22833 0.94894 0.91657 1.59069 0.90948 1.85387 1.04951 0.96326 1.96728 1.23533 1.06586 0.95306 1.04998 1.20319 0.86496 0.86295 0.75085 1.90700 1.15388 1.85630 1.47524 1.45957 1.10073 1.05327 1.78026 1.21090 0.95494 0.80855 1.02574 1.21671 0.98605 0.92243 1.04221 1.22457 0.89120 0.89061 1.00786 1.87980 1.32071 1.14199 1.94862 1.23510 0.98274 0.82827 0.95667 0.90339 1.23089 0.99748 0.97617 0.98791 1.23431 1.01752 0.94723 0.83355 1.89232 1.35665 1.69399 1.34582 1.24055 0.86504 0.97788 0.97111 0.92131 0.89151 0.89164 0.76675 0.91470 0.91457 0.90260 0.90326 0.92676 0.92759 0.89043 0.89534 0.88730 0.92112 0.91365 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 11 C 0.53 9.94 7.85 -10.99 -0.09 9.85 16 12 O -0.52 -11.79 15.86 5.56 0.09 -11.71 16 13 N -0.74 -9.77 5.56 -60.29 -0.33 -10.11 16 14 C 0.12 1.38 5.67 -4.04 -0.02 1.36 16 15 C -0.13 -1.08 5.70 -26.74 -0.15 -1.24 16 16 C 0.06 0.49 5.79 37.15 0.22 0.70 16 17 O -0.37 -3.37 9.98 -35.23 -0.35 -3.73 16 18 C 0.06 0.39 3.59 -25.16 -0.09 0.30 16 19 H 0.08 0.41 7.84 -51.93 -0.41 0.00 16 20 C -0.15 -0.90 6.90 -25.16 -0.17 -1.08 16 21 C 0.04 0.27 7.63 37.94 0.29 0.56 16 22 O -0.37 -3.52 11.66 -35.23 -0.41 -3.93 16 23 C 0.02 0.16 7.40 37.93 0.28 0.45 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 26 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 27 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 28 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 29 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.05 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.61 8.00 -51.93 -0.42 0.19 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -35.68 345.58 -7.83 -43.51 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.20 Total: -1.31 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 0.68 Total: -5.00 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.40 Total: -35.59 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.67 Total: -19.36 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.68 -7.83 -43.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150756374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.860 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds