Wall clock time and date at job start Tue Mar 31 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47366 * 179.97438 * 15 14 13 17 17 O 1.42904 * 109.46916 * 180.02562 * 16 15 14 18 18 C 1.42906 * 113.99823 * 180.02562 * 17 16 15 19 19 H 1.08993 * 110.45239 * 330.69620 * 18 17 16 20 20 C 1.54510 * 110.50704 * 208.09541 * 18 17 16 21 21 C 1.54487 * 104.06111 * 241.35047 * 20 18 17 22 22 O 1.44428 * 104.79958 * 23.98285 * 21 20 18 23 23 C 1.44784 * 105.29685 * 319.44978 * 22 21 20 24 24 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 26 26 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 27 27 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 28 28 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 29 29 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 30 30 H 1.08999 * 109.47369 * 300.00444 * 15 14 13 31 31 H 1.09009 * 109.46793 * 59.99447 * 15 14 13 32 32 H 1.08994 * 109.47451 * 300.00251 * 16 15 14 33 33 H 1.09003 * 109.47234 * 60.00586 * 16 15 14 34 34 H 1.08993 * 110.51546 * 359.97438 * 20 18 17 35 35 H 1.09000 * 110.50870 * 122.70934 * 20 18 17 36 36 H 1.09000 * 110.36819 * 142.80996 * 21 20 18 37 37 H 1.08996 * 110.37088 * 265.15420 * 21 20 18 38 38 H 1.09005 * 110.43146 * 281.78189 * 23 22 21 39 39 H 1.08995 * 110.48914 * 159.32775 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 6 2.9656 -10.1313 -0.0457 17 8 4.0603 -11.0499 -0.0498 18 6 3.6663 -12.4235 -0.0570 19 1 2.7050 -12.5467 0.4418 20 6 4.7440 -13.2992 0.6207 21 6 5.2027 -14.2619 -0.4972 22 8 4.8897 -13.5740 -1.7279 23 6 3.5979 -12.9595 -1.5042 24 1 -0.4849 0.8401 0.0004 25 1 3.1244 -3.7267 -0.9039 26 1 3.1244 -3.7361 0.8761 27 1 3.8007 -6.1835 -0.0260 28 1 1.7212 -7.8796 0.8553 29 1 1.7219 -7.8705 -0.9248 30 1 4.1109 -8.5339 -0.9278 31 1 4.1108 -8.5431 0.8521 32 1 2.3571 -10.2957 0.8436 33 1 2.3568 -10.2871 -0.9363 34 1 5.5773 -12.6846 0.9607 35 1 4.3148 -13.8572 1.4529 36 1 6.2753 -14.4426 -0.4257 37 1 4.6538 -15.2016 -0.4375 38 1 2.8032 -13.6997 -1.5974 39 1 3.4387 -12.1402 -2.2051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150756374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:22 Heat of formation + Delta-G solvation = -165.300103 kcal Electronic energy + Delta-G solvation = -19588.939363 eV Core-core repulsion = 16235.537788 eV Total energy + Delta-G solvation = -3353.401576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70631 -40.52610 -38.32360 -36.38445 -34.58123 -33.38135 -32.06609 -30.57305 -29.53868 -27.69156 -26.16747 -23.80895 -22.78087 -22.03623 -21.73094 -19.81580 -18.29664 -17.81561 -17.45240 -17.27505 -17.01055 -16.87331 -16.63694 -16.19382 -16.02300 -15.66995 -14.91666 -14.77620 -14.71521 -14.34656 -13.84135 -13.52164 -13.24963 -13.16717 -12.92511 -12.85103 -12.68597 -12.55900 -12.52858 -12.26301 -12.02616 -11.74284 -11.69910 -11.12587 -11.00988 -10.98646 -10.37225 -10.28277 -10.13958 -8.66721 -8.34273 -6.12566 1.26754 1.44435 1.46838 1.56689 1.60010 2.15918 2.28098 2.69556 2.99578 2.99725 3.32502 3.57233 3.83879 3.88487 3.96273 4.05810 4.07157 4.14589 4.23003 4.30017 4.44908 4.46174 4.50107 4.51714 4.58334 4.66897 4.74183 4.80674 4.90767 5.04370 5.09237 5.13085 5.41587 5.42261 5.74121 6.19975 6.25472 6.49023 7.06861 7.22785 8.74676 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.059396 B = 0.001958 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.299850 B =14293.668460 C =14499.015115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.714 5.714 14 C 0.124 3.876 15 C -0.117 4.117 16 C 0.062 3.938 17 O -0.392 6.392 18 C 0.049 3.951 19 H 0.098 0.902 20 C -0.152 4.152 21 C 0.039 3.961 22 O -0.404 6.404 23 C 0.018 3.982 24 H 0.271 0.729 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.417 0.583 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.799 -27.898 1.267 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.368 5.368 14 C 0.001 3.999 15 C -0.154 4.154 16 C -0.015 4.015 17 O -0.311 6.311 18 C -0.009 4.009 19 H 0.116 0.884 20 C -0.190 4.190 21 C -0.037 4.037 22 O -0.324 6.324 23 C -0.058 4.058 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.254 0.746 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.992 -28.098 1.073 29.841 hybrid contribution 1.472 1.307 0.074 1.970 sum 11.464 -26.791 1.147 29.163 Atomic orbital electron populations 1.70181 1.07963 1.28672 1.47917 1.26141 0.95986 1.03341 0.93724 0.84998 0.77795 0.75669 0.79495 1.18679 1.20392 1.18648 1.23183 0.95379 0.92007 1.58997 0.89863 1.85561 1.10604 0.99255 1.97064 1.23380 1.03569 0.94312 1.06904 1.20062 0.86209 0.86705 0.75095 1.90689 1.17411 1.86133 1.50219 1.45719 1.10438 1.05110 1.75535 1.21206 0.96634 0.79891 1.02210 1.21524 0.97287 0.91974 1.04656 1.22467 0.89001 0.88423 1.01632 1.87943 1.32881 1.15325 1.94996 1.23711 0.99554 0.81880 0.95717 0.88375 1.23115 0.99188 0.97396 0.99268 1.23626 1.02493 0.95266 0.82349 1.89187 1.36758 1.70054 1.36362 1.24171 0.86341 0.98080 0.97253 0.91988 0.87147 0.87097 0.74571 0.91798 0.91975 0.89997 0.89683 0.91659 0.92168 0.90203 0.87237 0.88258 0.90326 0.89483 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.04 13.22 21.65 0.29 -55.76 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.55 -31.31 9.50 67.96 0.65 -30.67 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 10 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 11 C 0.53 19.50 7.85 87.66 0.69 20.19 16 12 O -0.57 -26.09 15.86 -3.02 -0.05 -26.14 16 13 N -0.71 -17.49 5.56 -463.06 -2.57 -20.06 16 14 C 0.12 2.57 5.67 86.38 0.49 3.06 16 15 C -0.12 -1.70 5.70 30.59 0.17 -1.53 16 16 C 0.06 0.84 5.79 71.98 0.42 1.25 16 17 O -0.39 -6.47 9.98 -148.98 -1.49 -7.96 16 18 C 0.05 0.59 3.59 31.61 0.11 0.71 16 19 H 0.10 0.77 7.84 -2.39 -0.02 0.75 16 20 C -0.15 -1.50 6.90 31.61 0.22 -1.28 16 21 C 0.04 0.42 7.63 72.49 0.55 0.97 16 22 O -0.40 -7.38 11.66 -148.98 -1.74 -9.12 16 23 C 0.02 0.25 7.40 72.48 0.54 0.78 16 24 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 26 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 27 H 0.42 7.37 8.47 -92.71 -0.79 6.58 16 28 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.07 0.75 8.10 -2.39 -0.02 0.73 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.97 8.00 -2.39 -0.02 0.95 16 35 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 Total: -1.00 -79.08 345.58 0.30 -78.78 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.25 Total: 14.31 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 4.74 Total: -10.01 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -2.29 Total: -75.82 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -3.27 Total: -43.22 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -79.08 0.30 -78.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150756374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.522 kcal (2) G-P(sol) polarization free energy of solvation -79.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds