Wall clock time and date at job start Tue Mar 31 2020 03:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 N 1.46499 * 109.46437 * 65.00436 * 3 2 1 14 14 C 1.34776 * 120.00348 * 274.99648 * 13 3 2 15 15 O 1.21284 * 119.99546 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00271 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.55163 * 29.80668 * 16 14 13 18 18 C 1.53039 * 109.55148 * 150.00242 * 16 14 13 19 19 C 1.52589 * 109.98600 * 183.50174 * 18 16 14 20 20 C 1.52591 * 110.64166 * 290.01073 * 19 18 16 21 21 C 1.53034 * 109.98522 * 69.98445 * 20 19 18 22 22 S 1.81666 * 109.00165 * 296.35472 * 21 20 19 23 23 O 1.42102 * 108.66046 * 299.96751 * 22 21 20 24 24 O 1.42098 * 108.66423 * 168.62824 * 22 21 20 25 25 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 26 26 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 28 28 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 29 29 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 30 30 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99954 * 95.00750 * 13 3 2 32 32 H 1.08994 * 109.38299 * 303.65554 * 18 16 14 33 33 H 1.09000 * 109.38733 * 63.44531 * 18 16 14 34 34 H 1.08997 * 109.24414 * 50.30772 * 19 18 16 35 35 H 1.09000 * 109.24042 * 169.71511 * 19 18 16 36 36 H 1.09001 * 109.38706 * 190.14745 * 20 19 18 37 37 H 1.09004 * 109.38212 * 309.82884 * 20 19 18 38 38 H 1.09006 * 109.54621 * 56.20882 * 21 20 19 39 39 H 1.09001 * 109.55071 * 176.39745 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.5592 -0.3388 -0.7711 11 1 6.3795 0.9392 -2.8241 12 1 6.5539 2.0849 -0.6939 13 7 1.6525 2.0973 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3392 2.6327 0.4343 16 6 0.0368 3.3383 2.6548 17 1 0.9231 3.7404 3.1455 18 6 -0.9432 4.4751 2.3558 19 6 -1.2861 5.2200 3.6426 20 6 -2.1446 4.3495 4.5556 21 6 -1.3084 3.1976 5.1177 22 16 -0.7716 2.1327 3.7472 23 8 -1.9235 1.6235 3.0890 24 8 0.2110 1.2281 4.2321 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.8287 -0.0519 -2.9548 31 1 2.2720 2.1230 1.9978 32 1 -0.4888 5.1675 1.6472 33 1 -1.8552 4.0626 1.9243 34 1 -0.3646 5.4846 4.1611 35 1 -1.8329 6.1301 3.3960 36 1 -2.5264 4.9543 5.3781 37 1 -2.9820 3.9448 3.9871 38 1 -0.4348 3.5982 5.6320 39 1 -1.9099 2.6179 5.8179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168449328.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:33 Heat of formation + Delta-G solvation = -120.686424 kcal Electronic energy + Delta-G solvation = -22527.577249 eV Core-core repulsion = 19176.110267 eV Total energy + Delta-G solvation = -3351.466981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.43268 -37.40893 -36.63885 -35.99634 -35.11473 -32.58957 -32.01752 -30.77937 -28.27610 -26.85523 -24.24232 -22.88436 -21.17693 -20.66080 -19.44531 -18.88063 -17.67447 -16.79508 -16.61945 -15.90427 -15.57521 -15.43028 -14.96367 -14.35523 -14.27384 -14.02929 -13.80197 -13.26460 -13.05801 -12.66506 -12.16732 -12.09601 -12.00655 -11.95252 -11.79551 -11.56869 -11.43580 -11.22960 -11.15128 -10.99364 -10.82834 -10.69456 -10.34469 -10.26983 -10.16730 -9.60359 -9.18718 -9.05057 -8.51549 -7.92003 -6.12710 -4.22496 -0.15949 2.55532 3.15868 3.25042 3.31332 3.33025 3.48619 3.74294 3.94741 4.28064 4.31363 4.34379 4.53393 4.64033 4.75311 4.99849 5.12198 5.18844 5.22145 5.40506 5.52243 5.59188 5.74086 5.85055 6.08132 6.45370 6.50340 6.69416 7.08058 7.20317 7.30790 7.39435 7.61003 7.69669 7.87782 8.16602 8.53142 8.71445 8.96846 9.44043 10.92729 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027660 B = 0.004832 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.042447 B = 5793.262174 C = 5960.249587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 C 0.269 3.731 4 H 0.053 0.947 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.697 5.697 14 C 0.515 3.485 15 O -0.519 6.519 16 C -0.598 4.598 17 H 0.150 0.850 18 C -0.092 4.092 19 C -0.140 4.140 20 C -0.112 4.112 21 C -0.607 4.607 22 S 2.421 3.579 23 O -0.915 6.915 24 O -0.928 6.928 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.035 0.965 28 H 0.102 0.898 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.392 0.608 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.175 9.220 14.631 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C 0.167 3.833 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.345 5.345 14 C 0.296 3.704 15 O -0.396 6.396 16 C -0.708 4.708 17 H 0.168 0.832 18 C -0.130 4.130 19 C -0.178 4.178 20 C -0.150 4.150 21 C -0.737 4.737 22 S 2.599 3.401 23 O -0.912 6.912 24 O -0.925 6.925 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.120 0.880 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.225 0.775 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.152 0.848 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.790 8.169 13.615 18.148 hybrid contribution 1.598 0.818 0.559 1.880 sum -7.192 8.987 14.174 18.259 Atomic orbital electron populations 1.21872 0.98187 0.98602 1.01144 1.21993 0.92717 0.99628 1.02720 1.18925 0.94534 0.89378 0.80424 0.92903 1.21201 0.90460 1.39458 1.06260 0.91945 1.24879 0.98688 0.94725 0.95322 1.69893 1.35187 1.37523 1.09236 0.86430 0.84733 0.78477 0.77336 1.20473 1.21078 1.19900 1.46601 1.13821 1.55023 1.19060 1.18990 0.83884 0.80318 0.87233 1.90726 1.51078 1.58979 1.38838 1.30455 1.12589 1.15452 1.12340 0.83235 1.21186 0.98547 0.94941 0.98343 1.21752 1.00905 0.99657 0.95472 1.21324 0.98240 0.95143 1.00324 1.30316 1.11107 1.13613 1.18621 1.08305 0.76597 0.77223 0.77950 1.93615 1.48708 1.75740 1.73160 1.93618 1.60834 1.58338 1.79747 0.92911 0.95353 0.94632 0.87967 0.94578 0.92492 0.77459 0.89077 0.88695 0.90694 0.89394 0.89513 0.89497 0.84822 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.52 37.16 0.32 -3.05 16 2 C -0.13 -3.34 5.45 -26.73 -0.15 -3.49 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -14.18 8.72 -34.44 -0.30 -14.48 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 8 N -0.88 -24.71 11.30 55.43 0.63 -24.09 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.70 -14.76 5.02 -54.93 -0.28 -15.03 16 14 C 0.52 10.15 5.45 -10.99 -0.06 10.09 16 15 O -0.52 -11.96 13.39 5.55 0.07 -11.89 16 16 C -0.60 -8.08 2.80 -27.86 -0.08 -8.16 16 17 H 0.15 1.45 8.14 -51.93 -0.42 1.02 16 18 C -0.09 -1.03 4.55 -26.92 -0.12 -1.16 16 19 C -0.14 -1.01 5.63 -27.15 -0.15 -1.16 16 20 C -0.11 -0.79 5.73 -26.92 -0.15 -0.95 16 21 C -0.61 -4.80 6.35 37.18 0.24 -4.56 16 22 S 2.42 33.27 4.67 -107.50 -0.50 32.77 16 23 O -0.92 -15.99 17.91 -57.81 -1.04 -17.02 16 24 O -0.93 -15.52 18.10 -57.81 -1.05 -16.57 16 25 H 0.05 1.30 7.85 -51.93 -0.41 0.89 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.84 5.65 -51.93 -0.29 0.54 16 28 H 0.10 2.80 5.96 -51.93 -0.31 2.49 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 31 H 0.39 7.27 8.54 -40.82 -0.35 6.92 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.20 7.84 -51.93 -0.41 0.79 16 34 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.66 8.01 -51.93 -0.42 0.25 16 38 H 0.13 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -34.68 322.69 -8.95 -43.63 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.92 Total: 6.25 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -0.71 Total: -18.51 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.35 Total: -39.12 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -2.01 Total: -45.48 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 33.27 SS G_CDS: -0.50 Total: 32.77 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.68 -8.95 -43.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168449328.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.057 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds