Wall clock time and date at job start Tue Mar 31 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 N 1.46499 * 109.46437 * 65.00436 * 3 2 1 14 14 C 1.34776 * 120.00348 * 274.99648 * 13 3 2 15 15 O 1.21284 * 119.99546 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00271 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.55163 * 29.80668 * 16 14 13 18 18 C 1.53039 * 109.55148 * 150.00242 * 16 14 13 19 19 C 1.52589 * 109.98600 * 183.50174 * 18 16 14 20 20 C 1.52591 * 110.64166 * 290.01073 * 19 18 16 21 21 C 1.53034 * 109.98522 * 69.98445 * 20 19 18 22 22 S 1.81666 * 109.00165 * 296.35472 * 21 20 19 23 23 O 1.42102 * 108.66046 * 299.96751 * 22 21 20 24 24 O 1.42098 * 108.66423 * 168.62824 * 22 21 20 25 25 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 26 26 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 28 28 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 29 29 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 30 30 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99954 * 95.00750 * 13 3 2 32 32 H 1.08994 * 109.38299 * 303.65554 * 18 16 14 33 33 H 1.09000 * 109.38733 * 63.44531 * 18 16 14 34 34 H 1.08997 * 109.24414 * 50.30772 * 19 18 16 35 35 H 1.09000 * 109.24042 * 169.71511 * 19 18 16 36 36 H 1.09001 * 109.38706 * 190.14745 * 20 19 18 37 37 H 1.09004 * 109.38212 * 309.82884 * 20 19 18 38 38 H 1.09006 * 109.54621 * 56.20882 * 21 20 19 39 39 H 1.09001 * 109.55071 * 176.39745 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.5592 -0.3388 -0.7711 11 1 6.3795 0.9392 -2.8241 12 1 6.5539 2.0849 -0.6939 13 7 1.6525 2.0973 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3392 2.6327 0.4343 16 6 0.0368 3.3383 2.6548 17 1 0.9231 3.7404 3.1455 18 6 -0.9432 4.4751 2.3558 19 6 -1.2861 5.2200 3.6426 20 6 -2.1446 4.3495 4.5556 21 6 -1.3084 3.1976 5.1177 22 16 -0.7716 2.1327 3.7472 23 8 -1.9235 1.6235 3.0890 24 8 0.2110 1.2281 4.2321 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.8287 -0.0519 -2.9548 31 1 2.2720 2.1230 1.9978 32 1 -0.4888 5.1675 1.6472 33 1 -1.8552 4.0626 1.9243 34 1 -0.3646 5.4846 4.1611 35 1 -1.8329 6.1301 3.3960 36 1 -2.5264 4.9543 5.3781 37 1 -2.9820 3.9448 3.9871 38 1 -0.4348 3.5982 5.6320 39 1 -1.9099 2.6179 5.8179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168449328.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:31 Heat of formation + Delta-G solvation = -148.448658 kcal Electronic energy + Delta-G solvation = -22528.781109 eV Core-core repulsion = 19176.110267 eV Total energy + Delta-G solvation = -3352.670842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -41.01769 -38.44477 -37.64972 -37.15058 -36.90553 -34.41858 -33.38844 -32.41084 -29.48339 -28.49604 -25.47974 -24.58360 -22.34504 -21.90114 -21.30671 -19.96744 -19.21747 -17.98085 -17.88830 -17.44156 -17.14485 -16.64476 -16.29292 -16.03563 -15.46505 -15.05066 -14.82698 -14.68015 -14.43358 -14.05119 -13.79888 -13.54982 -13.28238 -13.23203 -13.16150 -12.95592 -12.78244 -12.68715 -12.57805 -12.29574 -12.22073 -12.10790 -11.77235 -11.68865 -11.54837 -11.28213 -11.10792 -10.71249 -10.55708 -9.77880 -8.18374 -6.36484 -1.16343 1.44191 1.45249 1.51562 1.55804 1.70251 2.13322 2.42913 2.73705 2.90767 3.11101 3.40521 3.60461 3.74104 3.77308 4.02877 4.13451 4.33594 4.40451 4.46351 4.57096 4.65974 4.70188 4.88315 4.97821 5.00706 5.16303 5.17426 5.21156 5.33296 5.38214 5.44303 5.55247 5.70541 5.82259 6.09189 6.69207 6.78592 7.25487 7.40670 8.87553 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027660 B = 0.004832 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.042447 B = 5793.262174 C = 5960.249587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.126 4.126 3 C 0.275 3.725 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.974 3.026 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.263 1.263 13 N -0.701 5.701 14 C 0.505 3.495 15 O -0.563 6.563 16 C -0.592 4.592 17 H 0.192 0.808 18 C -0.094 4.094 19 C -0.135 4.135 20 C -0.119 4.119 21 C -0.560 4.560 22 S 2.392 3.608 23 O -0.970 6.970 24 O -0.970 6.970 25 H 0.034 0.966 26 H 0.047 0.953 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.266 0.734 31 H 0.406 0.594 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.177 0.823 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 11.472 18.162 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.799 3.201 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.187 1.187 13 N -0.351 5.351 14 C 0.289 3.711 15 O -0.442 6.442 16 C -0.701 4.701 17 H 0.210 0.790 18 C -0.133 4.133 19 C -0.172 4.172 20 C -0.158 4.158 21 C -0.695 4.695 22 S 2.577 3.423 23 O -0.967 6.967 24 O -0.967 6.967 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.147 0.853 37 H 0.093 0.907 38 H 0.195 0.805 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.164 10.401 17.137 21.645 hybrid contribution 1.304 0.189 -0.495 1.407 sum -6.861 10.589 16.641 20.884 Atomic orbital electron populations 1.21755 0.97382 0.99472 1.00188 1.21868 0.93373 0.99656 1.01586 1.18490 0.94243 0.88968 0.81097 0.97511 1.21545 0.90974 1.39530 1.06788 0.90754 1.25804 1.03605 0.94175 0.94876 1.70045 1.37238 1.38241 1.09780 0.85311 0.78685 0.78912 0.77208 1.19820 1.21095 1.18666 1.46402 1.15122 1.55446 1.18083 1.19975 0.82583 0.79393 0.89142 1.90696 1.51988 1.60274 1.41270 1.30501 1.15028 1.15723 1.08885 0.79034 1.21287 0.96753 0.94160 1.01064 1.21799 1.02720 0.99564 0.93086 1.21522 0.97729 0.95016 1.01503 1.30039 1.13237 1.12027 1.14204 1.08838 0.75507 0.78390 0.79518 1.93549 1.49727 1.77970 1.75500 1.93562 1.61869 1.61154 1.80132 0.94657 0.93440 0.94777 0.90212 0.94310 0.92475 0.75909 0.89770 0.91231 0.87653 0.87319 0.85299 0.90680 0.80548 0.82106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 8.52 71.98 0.61 -5.99 16 2 C -0.13 -6.71 5.45 30.60 0.17 -6.54 16 3 C 0.28 14.73 2.24 44.25 0.10 14.83 16 4 H 0.01 0.43 7.58 -2.39 -0.02 0.42 16 5 C -0.55 -29.73 8.72 25.60 0.22 -29.51 16 6 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 7 C 0.02 0.85 5.30 84.65 0.45 1.30 16 8 N -0.92 -53.13 11.30 21.45 0.24 -52.88 16 9 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 N -0.70 -30.62 5.02 -446.09 -2.24 -32.86 16 14 C 0.50 20.60 5.45 87.66 0.48 21.08 16 15 O -0.56 -27.65 13.39 -3.04 -0.04 -27.69 16 16 C -0.59 -15.39 2.80 29.86 0.08 -15.31 16 17 H 0.19 3.12 8.14 -2.39 -0.02 3.10 16 18 C -0.09 -1.99 4.55 30.47 0.14 -1.86 16 19 C -0.13 -1.30 5.63 30.32 0.17 -1.13 16 20 C -0.12 -1.06 5.73 30.47 0.17 -0.88 16 21 C -0.56 -5.90 6.35 71.99 0.46 -5.44 16 22 S 2.39 63.35 4.67 -56.49 -0.26 63.09 16 23 O -0.97 -35.05 17.91 -127.40 -2.28 -37.33 16 24 O -0.97 -32.02 18.10 -127.40 -2.31 -34.33 16 25 H 0.03 1.85 7.85 -2.39 -0.02 1.84 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.03 1.70 5.65 -2.39 -0.01 1.69 16 28 H 0.08 4.61 5.96 -2.39 -0.01 4.60 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.41 15.13 8.54 -92.71 -0.79 14.34 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.81 7.84 -2.39 -0.02 1.79 16 34 H 0.11 0.46 8.09 -2.39 -0.02 0.44 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.07 0.91 8.01 -2.38 -0.02 0.90 16 38 H 0.18 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -82.87 322.69 -1.55 -84.43 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.26 Total: 22.53 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 3.05 Total: -29.45 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -2.00 Total: -85.74 kcal Atomic # 8 Polarization: -94.72 SS G_CDS: -4.63 Total: -99.35 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 63.35 SS G_CDS: -0.26 Total: 63.09 kcal Total: -82.87 -1.55 -84.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168449328.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.023 kcal (2) G-P(sol) polarization free energy of solvation -82.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds