Wall clock time and date at job start Tue Mar 31 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00034 * 2 1 4 4 H 1.48489 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47025 * 300.00753 * 3 2 1 6 6 H 1.48500 * 109.46761 * 60.00215 * 3 2 1 7 7 C 1.37871 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00001 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47164 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47184 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54171 * 68.37302 * 11 10 9 13 13 O 1.42097 * 110.54293 * 291.62669 * 11 10 9 14 14 N 1.65597 * 104.44704 * 179.97438 * 11 10 9 15 15 C 1.46497 * 120.00049 * 65.00405 * 14 11 10 16 16 H 1.08997 * 112.89655 * 344.22537 * 15 14 11 17 17 C 1.53857 * 113.67987 * 212.83207 * 15 14 11 18 18 C 1.54065 * 87.01036 * 270.73297 * 17 15 14 19 19 H 1.09003 * 113.03932 * 220.69250 * 18 17 15 20 20 O 1.41962 * 112.45580 * 92.07875 * 18 17 15 21 21 C 1.42430 * 116.30196 * 222.56476 * 20 18 17 22 22 C 1.53170 * 108.91159 * 58.29405 * 21 20 18 23 23 C 1.52783 * 108.70553 * 294.52612 * 22 21 20 24 24 C 1.51865 * 110.84728 * 54.16430 * 23 22 21 25 25 H 1.08996 * 112.05146 * 193.13088 * 24 23 22 26 26 H 0.97005 * 120.00461 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.46845 * 60.00552 * 9 7 2 28 28 H 1.09002 * 109.47146 * 300.00046 * 9 7 2 29 29 H 1.09004 * 109.47058 * 59.99983 * 10 9 7 30 30 H 1.09003 * 109.46724 * 300.00364 * 10 9 7 31 31 H 0.96999 * 120.00223 * 244.99596 * 14 11 10 32 32 H 1.09001 * 113.63425 * 25.28034 * 17 15 14 33 33 H 1.08998 * 113.64011 * 156.17855 * 17 15 14 34 34 H 1.08998 * 109.56456 * 298.45996 * 21 20 18 35 35 H 1.08999 * 109.65524 * 178.18195 * 21 20 18 36 36 H 1.08998 * 109.60067 * 174.76252 * 22 21 20 37 37 H 1.08996 * 109.60016 * 54.28926 * 22 21 20 38 38 H 1.09001 * 109.20007 * 293.81300 * 23 22 21 39 39 H 1.08999 * 109.16617 * 174.49360 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2331 0.0002 12 8 0.6638 -5.4200 -1.2365 13 8 0.6647 -5.4193 1.2375 14 7 2.5205 -6.3926 -0.0006 15 6 3.4197 -6.5227 1.1487 16 1 3.3990 -5.6521 1.8040 17 6 4.8400 -6.9799 0.7733 18 6 4.3326 -8.4248 0.9426 19 1 5.0533 -9.0746 1.4391 20 8 3.8540 -8.9775 -0.2742 21 6 2.6459 -9.7277 -0.1946 22 6 1.5412 -8.8310 0.3725 23 6 1.8949 -8.4701 1.8143 24 6 3.2827 -7.8586 1.8935 25 1 3.6483 -7.8048 2.9189 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6043 0.8895 30 1 2.8719 -3.6042 -0.8905 31 1 2.6176 -6.9858 -0.7619 32 1 5.1224 -6.7329 -0.2501 33 1 5.5981 -6.6945 1.5027 34 1 2.7919 -10.5861 0.4611 35 1 2.3620 -10.0722 -1.1890 36 1 0.5907 -9.3642 0.3518 37 1 1.4660 -7.9218 -0.2240 38 1 1.8646 -9.3710 2.4271 39 1 1.1655 -7.7542 2.1933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190623891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:57 Heat of formation + Delta-G solvation = -118.760011 kcal Electronic energy + Delta-G solvation = -22314.005498 eV Core-core repulsion = 18962.622052 eV Total energy + Delta-G solvation = -3351.383446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.90023 -38.15531 -37.08006 -36.99208 -35.90667 -34.40137 -33.51283 -33.12302 -28.23561 -27.60709 -25.89271 -24.49094 -23.63836 -22.18658 -20.39455 -20.34680 -19.18742 -18.36458 -17.18412 -17.07884 -17.01342 -16.74619 -16.51962 -16.14611 -15.82302 -15.49113 -15.12006 -14.80318 -14.48180 -13.96609 -13.72412 -13.60225 -13.17431 -13.09836 -12.98460 -12.95400 -12.80246 -12.74066 -12.39865 -12.27595 -12.18658 -12.08797 -11.92552 -11.73578 -11.53644 -11.13071 -10.99036 -10.66047 -10.22718 -9.85423 -8.26472 -6.40682 -0.68597 1.41245 1.41895 1.55292 1.82813 2.37983 2.77958 2.78809 3.07181 3.26374 3.44629 3.63323 3.82816 3.93867 4.00121 4.05166 4.08442 4.10104 4.23504 4.42399 4.58079 4.72789 4.75232 4.78303 4.87691 4.93645 4.99055 5.10950 5.14987 5.25767 5.26706 5.32073 5.33522 5.50890 5.68062 6.05322 6.09282 6.47945 6.73301 7.29842 8.86114 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.031508 B = 0.004268 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.456948 B = 6558.259374 C = 6949.869490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.975 3.025 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.020 3.980 10 C -0.589 4.589 11 S 2.615 3.385 12 O -1.002 7.002 13 O -0.986 6.986 14 N -1.085 6.085 15 C 0.111 3.889 16 H 0.110 0.890 17 C -0.138 4.138 18 C 0.072 3.928 19 H 0.093 0.907 20 O -0.385 6.385 21 C 0.068 3.932 22 C -0.185 4.185 23 C -0.113 4.113 24 C -0.144 4.144 25 H 0.129 0.871 26 H 0.267 0.733 27 H 0.003 0.997 28 H 0.008 0.992 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.425 0.575 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.825 -18.963 3.654 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.178 1.178 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.095 0.905 9 C -0.019 4.019 10 C -0.721 4.721 11 S 2.711 3.289 12 O -0.993 6.993 13 O -0.976 6.976 14 N -0.847 5.847 15 C 0.003 3.997 16 H 0.128 0.872 17 C -0.177 4.177 18 C 0.014 3.986 19 H 0.110 0.890 20 O -0.305 6.305 21 C -0.008 4.008 22 C -0.223 4.223 23 C -0.150 4.150 24 C -0.164 4.164 25 H 0.147 0.853 26 H 0.076 0.924 27 H 0.022 0.978 28 H 0.026 0.974 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.265 0.735 32 H 0.101 0.899 33 H 0.152 0.848 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.811 -18.918 3.623 22.088 hybrid contribution 0.023 1.057 -0.200 1.076 sum 10.835 -17.861 3.424 21.169 Atomic orbital electron populations 1.70111 1.08123 1.28279 1.50972 1.26124 0.95841 1.03920 0.94345 0.85252 0.79202 0.77936 0.77788 1.17824 1.20471 1.20290 1.21550 0.94017 0.90725 1.51404 0.90521 1.18827 0.93614 0.93195 0.96272 1.30367 1.12808 1.16576 1.12371 1.04647 0.74917 0.76367 0.72933 1.93503 1.73180 1.85861 1.46728 1.93512 1.72438 1.85233 1.46390 1.55548 1.51641 1.49536 1.27964 1.22024 0.91292 0.99369 0.86988 0.87247 1.23711 0.95563 0.93834 1.04575 1.22847 0.95332 0.94878 0.85532 0.88955 1.87397 1.41237 1.70306 1.31540 1.22551 0.82930 0.92813 1.02467 1.22665 1.00050 1.01597 0.98003 1.21025 0.96447 1.01083 0.96487 1.23101 0.95947 0.96162 1.01194 0.85281 0.92393 0.97835 0.97402 0.83727 0.84178 0.73483 0.89865 0.84814 0.91814 0.87861 0.90669 0.91416 0.90516 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.05 13.29 21.44 0.28 -56.76 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 4 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.88 16 9 C 0.02 1.04 4.98 29.85 0.15 1.19 16 10 C -0.59 -22.21 6.01 71.98 0.43 -21.78 16 11 S 2.61 93.83 5.11 -56.49 -0.29 93.54 16 12 O -1.00 -42.89 18.08 -127.65 -2.31 -45.19 16 13 O -0.99 -40.20 17.20 -127.65 -2.20 -42.39 16 14 N -1.08 -27.81 3.17 -167.41 -0.53 -28.34 16 15 C 0.11 2.24 4.16 45.47 0.19 2.43 16 16 H 0.11 2.05 7.70 -2.39 -0.02 2.04 16 17 C -0.14 -2.02 7.66 31.24 0.24 -1.78 16 18 C 0.07 1.14 4.73 30.80 0.15 1.28 16 19 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 20 O -0.39 -7.60 9.29 -148.96 -1.38 -8.99 16 21 C 0.07 1.20 6.83 72.04 0.49 1.69 16 22 C -0.18 -4.04 5.64 30.58 0.17 -3.87 16 23 C -0.11 -2.39 5.54 30.15 0.17 -2.22 16 24 C -0.14 -2.50 3.95 -11.13 -0.04 -2.54 16 25 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 27 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.14 4.61 7.78 -2.39 -0.02 4.59 16 30 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 31 H 0.42 10.36 6.01 -96.75 -0.58 9.77 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.76 4.06 -2.39 -0.01 1.75 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.54 7.52 -2.39 -0.02 1.52 16 Total: -1.00 -75.30 319.73 -1.29 -76.59 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.47 Total: 21.30 kcal Atomic # 6 Polarization: -57.56 SS G_CDS: 2.64 Total: -54.92 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -0.25 Total: -85.10 kcal Atomic # 8 Polarization: -90.69 SS G_CDS: -5.89 Total: -96.57 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 93.83 SS G_CDS: -0.29 Total: 93.54 kcal Total: -75.30 -1.29 -76.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190623891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.170 kcal (2) G-P(sol) polarization free energy of solvation -75.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds