Wall clock time and date at job start Tue Mar 31 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48497 * 109.46749 * 269.99597 * 3 2 1 5 5 H 1.48502 * 109.47259 * 29.99704 * 3 2 1 6 6 H 1.48501 * 109.46939 * 150.00312 * 3 2 1 7 7 C 1.37874 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00243 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00101 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47195 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.46973 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54050 * 68.37715 * 11 10 9 13 13 O 1.42097 * 110.54484 * 291.62482 * 11 10 9 14 14 N 1.65600 * 104.44889 * 180.02562 * 11 10 9 15 15 C 1.46495 * 120.00109 * 64.99767 * 14 11 10 16 16 H 1.09001 * 113.17868 * 12.40506 * 15 14 11 17 17 C 1.56348 * 114.15866 * 239.38728 * 15 14 11 18 18 C 1.50009 * 84.34506 * 282.41167 * 17 15 14 19 19 H 1.09001 * 111.50746 * 75.83203 * 18 17 15 20 20 O 1.40846 * 127.42334 * 218.70527 * 18 17 15 21 21 C 1.44160 * 109.95239 * 162.74477 * 20 18 17 22 22 C 1.52398 * 112.91585 * 303.35302 * 21 20 18 23 23 C 1.54394 * 112.06628 * 50.02649 * 22 21 20 24 24 C 1.50572 * 114.06098 * 145.00105 * 15 14 11 25 25 H 1.08996 * 113.26322 * 192.07219 * 24 15 14 26 26 H 0.97003 * 119.99942 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47162 * 59.99973 * 9 7 2 28 28 H 1.09002 * 109.46630 * 299.99884 * 9 7 2 29 29 H 1.08998 * 109.46648 * 59.99672 * 10 9 7 30 30 H 1.09001 * 109.46796 * 299.99833 * 10 9 7 31 31 H 0.97006 * 119.99595 * 245.00539 * 14 11 10 32 32 H 1.09002 * 113.99365 * 168.55694 * 17 15 14 33 33 H 1.09002 * 114.06244 * 36.27986 * 17 15 14 34 34 H 1.09003 * 108.79068 * 182.46789 * 21 20 18 35 35 H 1.09001 * 108.79654 * 64.24514 * 21 20 18 36 36 H 1.09001 * 108.96742 * 289.36003 * 22 21 20 37 37 H 1.09003 * 108.96719 * 170.69116 * 22 21 20 38 38 H 1.09002 * 110.30791 * 65.06593 * 23 22 21 39 39 H 1.09002 * 110.31215 * 187.12194 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 16 5.8355 -2.6366 0.0009 12 8 6.3341 -2.1464 1.2380 13 8 6.3341 -2.1462 -1.2360 14 7 6.2487 -4.2402 0.0001 15 6 5.9121 -5.0828 -1.1501 16 1 5.5907 -4.5115 -2.0210 17 6 4.9933 -6.2998 -0.8049 18 6 6.2559 -6.9128 -0.2753 19 1 6.5358 -6.4833 0.6866 20 8 6.6632 -8.2571 -0.3782 21 6 8.0762 -8.3647 -0.1133 22 6 8.9205 -7.4906 -1.0328 23 6 8.4071 -6.0353 -1.0822 24 6 6.9371 -6.1427 -1.4555 25 1 6.7862 -6.6215 -2.4230 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8751 -0.6805 -0.8889 29 1 3.6584 -3.1502 -0.8892 30 1 3.6578 -3.1506 0.8908 31 1 6.7134 -4.6217 0.7613 32 1 4.5846 -6.8083 -1.6780 33 1 4.2462 -6.0895 -0.0395 34 1 8.3793 -9.4039 -0.2408 35 1 8.2632 -8.0710 0.9197 36 1 8.8970 -7.9088 -2.0391 37 1 9.9501 -7.4909 -0.6749 38 1 8.5161 -5.5624 -0.1062 39 1 8.9492 -5.4683 -1.8391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249454933.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:13 Heat of formation + Delta-G solvation = -79.615714 kcal Electronic energy + Delta-G solvation = -21755.373539 eV Core-core repulsion = 18405.687517 eV Total energy + Delta-G solvation = -3349.686022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.35324 -37.13197 -36.70133 -35.62446 -33.97382 -33.53853 -32.33896 -31.50343 -27.81233 -25.99418 -25.06562 -23.21782 -21.43361 -21.36537 -20.45052 -18.98119 -17.86180 -17.05266 -16.58206 -16.07118 -15.86739 -15.53661 -15.34638 -15.02370 -14.32772 -14.21035 -13.95732 -13.69987 -13.23085 -12.82854 -12.63400 -12.45528 -12.33405 -11.92038 -11.78094 -11.72628 -11.69838 -11.45684 -11.28214 -11.27054 -11.21630 -10.78811 -10.46887 -10.43385 -10.18718 -9.85419 -9.52154 -9.23325 -9.16313 -8.67636 -6.17833 -4.19263 0.59853 2.88804 3.25062 3.25553 3.33074 3.36939 3.97326 4.07285 4.29782 4.34602 4.44872 4.54292 4.59999 4.67428 4.83502 4.86464 5.00563 5.14018 5.14838 5.24347 5.30828 5.47158 5.49849 5.50426 5.59089 5.64416 5.66925 5.77521 5.88744 5.94013 6.15898 6.25760 6.79409 6.85365 6.87678 6.94111 7.53112 8.34988 8.83324 9.41776 10.94500 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033182 B = 0.003982 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.638670 B = 7030.354418 C = 7515.016671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.581 4.581 11 S 2.589 3.411 12 O -0.966 6.966 13 O -0.963 6.963 14 N -1.105 6.105 15 C 0.142 3.858 16 H 0.118 0.882 17 C -0.128 4.128 18 C 0.043 3.957 19 H 0.078 0.922 20 O -0.362 6.362 21 C 0.061 3.939 22 C -0.152 4.152 23 C -0.107 4.107 24 C -0.165 4.165 25 H 0.111 0.889 26 H 0.266 0.734 27 H 0.032 0.968 28 H 0.028 0.972 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.412 0.588 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.847 -15.907 -1.681 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.714 4.714 11 S 2.687 3.313 12 O -0.956 6.956 13 O -0.953 6.953 14 N -0.860 5.860 15 C 0.033 3.967 16 H 0.136 0.864 17 C -0.167 4.167 18 C -0.015 4.015 19 H 0.095 0.905 20 O -0.280 6.280 21 C -0.016 4.016 22 C -0.190 4.190 23 C -0.145 4.145 24 C -0.185 4.185 25 H 0.129 0.871 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.246 0.754 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.155 -15.161 -1.872 22.234 hybrid contribution 0.145 0.420 0.425 0.614 sum 16.300 -14.742 -1.447 22.025 Atomic orbital electron populations 1.69880 1.06212 1.27267 1.49946 1.24985 0.94818 0.99167 0.94134 0.86927 0.80688 0.83713 0.79125 1.19661 1.20761 1.18643 1.20842 0.87779 0.94920 1.52314 0.90367 1.19418 0.99951 0.87440 0.97873 1.30304 1.20800 1.09213 1.11090 1.05680 0.79182 0.72212 0.74236 1.93567 1.79303 1.77555 1.45186 1.93559 1.78412 1.77775 1.45543 1.55649 1.73797 1.29816 1.26751 1.21243 0.95739 0.91095 0.88659 0.86370 1.23445 0.95571 0.95037 1.02676 1.23356 0.98635 0.82391 0.97160 0.90484 1.87932 1.22730 1.26003 1.91377 1.22534 0.80697 1.00408 0.97929 1.22140 0.99691 0.95910 1.01242 1.21488 0.95140 0.95697 1.02129 1.23675 0.95120 0.98815 1.00940 0.87107 0.92367 0.94952 0.95351 0.85534 0.85405 0.75378 0.87692 0.89511 0.89006 0.93282 0.91237 0.90760 0.91447 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.27 27.47 -169.99 -4.67 16.60 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.26 9.66 -34.44 -0.33 -14.60 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 10 C -0.58 -10.08 6.01 37.16 0.22 -9.86 16 11 S 2.59 41.46 5.43 -107.50 -0.58 40.87 16 12 O -0.97 -18.25 18.08 -57.54 -1.04 -19.29 16 13 O -0.96 -18.02 17.60 -57.54 -1.01 -19.03 16 14 N -1.10 -12.74 5.19 -6.79 -0.04 -12.78 16 15 C 0.14 1.46 4.57 -70.12 -0.32 1.14 16 16 H 0.12 1.20 7.80 -51.93 -0.40 0.79 16 17 C -0.13 -1.19 7.84 -29.39 -0.23 -1.42 16 18 C 0.04 0.42 3.84 -29.10 -0.11 0.31 16 19 H 0.08 0.72 6.32 -51.93 -0.33 0.39 16 20 O -0.36 -3.84 10.99 -34.61 -0.38 -4.22 16 21 C 0.06 0.48 6.67 36.85 0.25 0.72 16 22 C -0.15 -1.10 5.95 -26.31 -0.16 -1.26 16 23 C -0.11 -0.94 5.98 -26.48 -0.16 -1.10 16 24 C -0.17 -1.55 3.35 -93.39 -0.31 -1.86 16 25 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 28 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 29 H 0.13 1.95 8.14 -51.92 -0.42 1.52 16 30 H 0.13 2.01 8.14 -51.92 -0.42 1.59 16 31 H 0.41 4.03 6.75 -34.47 -0.23 3.80 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.36 8.13 -51.93 -0.42 -0.07 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.59 7.24 -51.93 -0.38 0.22 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -34.54 323.44 -9.36 -43.89 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.92 Total: 1.37 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -1.36 Total: -26.25 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.74 Total: -38.82 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -2.43 Total: -42.55 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 41.46 SS G_CDS: -0.58 Total: 40.87 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.54 -9.36 -43.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249454933.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.721 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds