Wall clock time and date at job start Tue Mar 31 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48497 * 109.46749 * 269.99597 * 3 2 1 5 5 H 1.48502 * 109.47259 * 29.99704 * 3 2 1 6 6 H 1.48501 * 109.46939 * 150.00312 * 3 2 1 7 7 C 1.37874 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00243 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00101 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47195 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.46973 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54050 * 68.37715 * 11 10 9 13 13 O 1.42097 * 110.54484 * 291.62482 * 11 10 9 14 14 N 1.65600 * 104.44889 * 180.02562 * 11 10 9 15 15 C 1.46495 * 120.00109 * 64.99767 * 14 11 10 16 16 H 1.09001 * 113.17868 * 12.40506 * 15 14 11 17 17 C 1.56348 * 114.15866 * 239.38728 * 15 14 11 18 18 C 1.50009 * 84.34506 * 282.41167 * 17 15 14 19 19 H 1.09001 * 111.50746 * 75.83203 * 18 17 15 20 20 O 1.40846 * 127.42334 * 218.70527 * 18 17 15 21 21 C 1.44160 * 109.95239 * 162.74477 * 20 18 17 22 22 C 1.52398 * 112.91585 * 303.35302 * 21 20 18 23 23 C 1.54394 * 112.06628 * 50.02649 * 22 21 20 24 24 C 1.50572 * 114.06098 * 145.00105 * 15 14 11 25 25 H 1.08996 * 113.26322 * 192.07219 * 24 15 14 26 26 H 0.97003 * 119.99942 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47162 * 59.99973 * 9 7 2 28 28 H 1.09002 * 109.46630 * 299.99884 * 9 7 2 29 29 H 1.08998 * 109.46648 * 59.99672 * 10 9 7 30 30 H 1.09001 * 109.46796 * 299.99833 * 10 9 7 31 31 H 0.97006 * 119.99595 * 245.00539 * 14 11 10 32 32 H 1.09002 * 113.99365 * 168.55694 * 17 15 14 33 33 H 1.09002 * 114.06244 * 36.27986 * 17 15 14 34 34 H 1.09003 * 108.79068 * 182.46789 * 21 20 18 35 35 H 1.09001 * 108.79654 * 64.24514 * 21 20 18 36 36 H 1.09001 * 108.96742 * 289.36003 * 22 21 20 37 37 H 1.09003 * 108.96719 * 170.69116 * 22 21 20 38 38 H 1.09002 * 110.30791 * 65.06593 * 23 22 21 39 39 H 1.09002 * 110.31215 * 187.12194 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 16 5.8355 -2.6366 0.0009 12 8 6.3341 -2.1464 1.2380 13 8 6.3341 -2.1462 -1.2360 14 7 6.2487 -4.2402 0.0001 15 6 5.9121 -5.0828 -1.1501 16 1 5.5907 -4.5115 -2.0210 17 6 4.9933 -6.2998 -0.8049 18 6 6.2559 -6.9128 -0.2753 19 1 6.5358 -6.4833 0.6866 20 8 6.6632 -8.2571 -0.3782 21 6 8.0762 -8.3647 -0.1133 22 6 8.9205 -7.4906 -1.0328 23 6 8.4071 -6.0353 -1.0822 24 6 6.9371 -6.1427 -1.4555 25 1 6.7862 -6.6215 -2.4230 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8751 -0.6805 -0.8889 29 1 3.6584 -3.1502 -0.8892 30 1 3.6578 -3.1506 0.8908 31 1 6.7134 -4.6217 0.7613 32 1 4.5846 -6.8083 -1.6780 33 1 4.2462 -6.0895 -0.0395 34 1 8.3793 -9.4039 -0.2408 35 1 8.2632 -8.0710 0.9197 36 1 8.8970 -7.9088 -2.0391 37 1 9.9501 -7.4909 -0.6749 38 1 8.5161 -5.5624 -0.1062 39 1 8.9492 -5.4683 -1.8391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249454933.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:13 Heat of formation + Delta-G solvation = -105.819820 kcal Electronic energy + Delta-G solvation = -21756.509834 eV Core-core repulsion = 18405.687517 eV Total energy + Delta-G solvation = -3350.822317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08914 -38.21549 -37.78638 -37.03889 -35.87264 -34.19171 -33.45166 -33.28249 -28.47296 -27.85108 -25.81812 -23.94493 -23.14909 -22.08592 -21.39535 -20.10543 -19.39216 -18.65072 -17.42708 -17.11344 -17.01833 -16.60616 -16.34999 -16.16597 -16.03633 -15.25627 -14.85162 -14.82735 -14.68469 -14.06065 -13.77513 -13.51790 -13.23249 -13.14294 -13.12374 -13.07260 -13.05054 -12.91755 -12.68457 -12.23129 -12.18628 -11.95375 -11.92153 -11.69114 -11.45485 -11.28356 -11.10513 -10.82661 -10.38466 -9.88967 -8.34753 -6.40207 -0.72302 1.33371 1.35430 1.45128 1.73412 2.31011 2.58088 2.74542 2.99505 3.23580 3.30304 3.51358 3.80736 3.88543 3.94411 4.02676 4.09151 4.12521 4.25832 4.29682 4.47464 4.57195 4.59805 4.69422 4.84457 4.89958 4.97068 5.01833 5.10066 5.11091 5.14351 5.20626 5.26154 5.44355 5.49611 6.01166 6.18841 6.19846 6.66368 7.24226 8.80734 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033182 B = 0.003982 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.638670 B = 7030.354418 C = 7515.016671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.013 3.987 3 Si 0.924 3.076 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.249 1.249 7 C -0.525 4.525 8 H 0.051 0.949 9 C -0.019 4.019 10 C -0.587 4.587 11 S 2.625 3.375 12 O -0.993 6.993 13 O -0.987 6.987 14 N -1.088 6.088 15 C 0.129 3.871 16 H 0.121 0.879 17 C -0.125 4.125 18 C 0.039 3.961 19 H 0.080 0.920 20 O -0.382 6.382 21 C 0.054 3.946 22 C -0.146 4.146 23 C -0.113 4.113 24 C -0.161 4.161 25 H 0.118 0.882 26 H 0.269 0.731 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.423 0.577 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.724 -16.599 -1.851 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.186 4.186 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.173 1.173 7 C -0.564 4.564 8 H 0.069 0.931 9 C -0.058 4.058 10 C -0.719 4.719 11 S 2.721 3.279 12 O -0.983 6.983 13 O -0.977 6.977 14 N -0.847 5.847 15 C 0.020 3.980 16 H 0.139 0.861 17 C -0.164 4.164 18 C -0.020 4.020 19 H 0.098 0.902 20 O -0.301 6.301 21 C -0.022 4.022 22 C -0.184 4.184 23 C -0.151 4.151 24 C -0.181 4.181 25 H 0.136 0.864 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.162 0.838 30 H 0.160 0.840 31 H 0.260 0.740 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.036 -15.862 -2.035 24.105 hybrid contribution -0.434 0.482 0.468 0.800 sum 17.602 -15.380 -1.567 23.428 Atomic orbital electron populations 1.70010 1.07903 1.28328 1.51806 1.25870 0.95609 1.03006 0.94081 0.86033 0.79915 0.79474 0.79857 1.18517 1.20117 1.17278 1.21186 0.90286 0.93858 1.51101 0.93104 1.19385 0.97180 0.91314 0.97885 1.30303 1.22746 1.05983 1.12836 1.04401 0.77781 0.72796 0.72917 1.93526 1.79428 1.78977 1.46378 1.93529 1.78430 1.79075 1.46643 1.55162 1.73354 1.28442 1.27769 1.21463 0.96997 0.91386 0.88123 0.86119 1.23468 0.95468 0.94268 1.03218 1.23418 0.98810 0.82357 0.97386 0.90233 1.87907 1.24282 1.26331 1.91546 1.22730 0.79560 1.01497 0.98395 1.22102 1.00306 0.94648 1.01344 1.21560 0.94750 0.96786 1.01962 1.23676 0.95363 0.97892 1.01209 0.86449 0.92186 0.95058 0.94947 0.83773 0.84014 0.74004 0.86586 0.89374 0.87605 0.92751 0.91062 0.89213 0.91579 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.39 13.96 21.45 0.30 -57.09 16 2 C 0.01 0.73 5.47 84.65 0.46 1.19 16 3 Si 0.92 43.36 27.47 68.60 1.88 45.24 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.53 -29.09 9.66 25.60 0.25 -28.84 16 8 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 9 C -0.02 -0.84 4.05 29.85 0.12 -0.72 16 10 C -0.59 -19.64 6.01 71.98 0.43 -19.20 16 11 S 2.63 79.78 5.43 -56.49 -0.31 79.47 16 12 O -0.99 -36.00 18.08 -127.65 -2.31 -38.31 16 13 O -0.99 -35.33 17.60 -127.65 -2.25 -37.58 16 14 N -1.09 -22.96 5.19 -175.38 -0.91 -23.87 16 15 C 0.13 2.39 4.57 43.57 0.20 2.59 16 16 H 0.12 2.22 7.80 -2.39 -0.02 2.20 16 17 C -0.12 -2.07 7.84 28.87 0.23 -1.85 16 18 C 0.04 0.67 3.84 29.06 0.11 0.79 16 19 H 0.08 1.31 6.32 -2.39 -0.02 1.30 16 20 O -0.38 -7.36 10.99 -146.75 -1.61 -8.97 16 21 C 0.05 0.73 6.67 71.78 0.48 1.21 16 22 C -0.15 -1.77 5.95 30.87 0.18 -1.59 16 23 C -0.11 -1.74 5.98 30.75 0.18 -1.56 16 24 C -0.16 -2.68 3.35 -12.59 -0.04 -2.73 16 25 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 28 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 29 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 30 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 31 H 0.42 7.39 6.75 -96.74 -0.65 6.73 16 32 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 1.02 7.24 -2.39 -0.02 1.01 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -73.44 323.44 -2.26 -75.70 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.34 Total: 16.12 kcal Atomic # 6 Polarization: -53.31 SS G_CDS: 2.61 Total: -50.71 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -0.61 Total: -80.96 kcal Atomic # 8 Polarization: -78.70 SS G_CDS: -6.17 Total: -84.86 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 16 Polarization: 79.78 SS G_CDS: -0.31 Total: 79.47 kcal Total: -73.44 -2.26 -75.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249454933.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.123 kcal (2) G-P(sol) polarization free energy of solvation -73.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds