Wall clock time and date at job start Tue Mar 31 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46502 * 109.46804 * 125.27541 * 3 2 1 5 5 C 1.46508 * 119.99947 * 85.00374 * 4 3 2 6 6 C 1.50692 * 109.47065 * 84.99963 * 5 4 3 7 7 H 1.08002 * 120.00500 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00025 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00288 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99744 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46864 * 90.00359 * 10 8 6 12 12 H 1.48500 * 109.46974 * 210.00074 * 10 8 6 13 13 H 1.48502 * 109.47055 * 330.00380 * 10 8 6 14 14 S 1.65605 * 120.00291 * 264.99958 * 4 3 2 15 15 O 1.42099 * 104.27885 * 206.07183 * 14 4 3 16 16 O 1.42099 * 104.27199 * 333.93325 * 14 4 3 17 17 C 1.81398 * 104.44457 * 90.00123 * 14 4 3 18 18 C 1.53005 * 109.46824 * 180.02562 * 17 14 4 19 19 H 1.09000 * 110.80507 * 308.62698 * 18 17 14 20 20 C 1.54816 * 110.90730 * 184.99876 * 18 17 14 21 21 C 1.54096 * 104.18704 * 220.92147 * 20 18 17 22 22 O 1.43747 * 107.29450 * 357.96984 * 21 20 18 23 23 C 1.44374 * 106.97600 * 26.51256 * 22 21 20 24 24 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 25 25 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 26 26 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 27 27 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 28 28 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 29 29 H 1.08997 * 109.47030 * 204.99843 * 5 4 3 30 30 H 1.09003 * 109.46652 * 324.99590 * 5 4 3 31 31 H 0.96997 * 120.00143 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47496 * 299.99688 * 17 14 4 33 33 H 1.08995 * 109.47627 * 60.00380 * 17 14 4 34 34 H 1.08995 * 110.48633 * 339.59847 * 20 18 17 35 35 H 1.08993 * 110.48455 * 102.11291 * 20 18 17 36 36 H 1.08995 * 109.88078 * 117.39734 * 21 20 18 37 37 H 1.09002 * 109.87929 * 238.54528 * 21 20 18 38 38 H 1.09001 * 110.62119 * 201.43528 * 23 22 21 39 39 H 1.09000 * 110.61531 * 78.44203 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9984 1.3292 1.1276 5 6 4.3258 0.7244 0.9916 6 6 5.2712 1.7218 0.3734 7 1 4.9186 2.7075 0.1080 8 6 6.5863 1.3758 0.1457 9 7 7.4113 2.2460 -0.3943 10 14 7.1962 -0.3294 0.6041 11 1 7.0145 -1.2467 -0.5494 12 1 8.6363 -0.2609 0.9601 13 1 6.4225 -0.8360 1.7661 14 16 2.5548 2.0400 2.5561 15 8 3.7848 2.4361 3.1472 16 8 1.5790 3.0022 2.1804 17 6 1.7922 0.6994 3.5110 18 6 1.3345 1.2367 4.8685 19 1 2.1447 1.7682 5.3676 20 6 0.7915 0.0938 5.7605 21 6 -0.4494 0.7031 6.4414 22 8 -0.5487 2.0692 6.0051 23 6 0.0891 2.1461 4.7121 24 1 -0.5401 0.9353 0.0045 25 1 -0.5400 -0.9353 -0.0045 26 1 1.8500 -0.9353 -0.0046 27 1 2.6173 1.4049 -0.9334 28 1 1.3589 2.1314 0.0945 29 1 4.6956 0.4346 1.9751 30 1 4.2598 -0.1572 0.3540 31 1 8.3364 2.0024 -0.5548 32 1 0.9324 0.3090 2.9666 33 1 2.5193 -0.0984 3.6621 34 1 0.5092 -0.7646 5.1509 35 1 1.5340 -0.1952 6.5042 36 1 -1.3425 0.1534 6.1446 37 1 -0.3327 0.6675 7.5245 38 1 0.3875 3.1711 4.4916 39 1 -0.5715 1.7620 3.9348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292712171.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:31 Heat of formation + Delta-G solvation = -91.603661 kcal Electronic energy + Delta-G solvation = -22149.313513 eV Core-core repulsion = 18799.107655 eV Total energy + Delta-G solvation = -3350.205858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.61355 -36.78246 -36.49419 -35.40689 -33.93727 -33.30927 -32.02036 -30.11054 -28.04595 -26.85271 -25.07165 -22.87289 -22.11213 -20.94634 -19.68071 -18.35546 -17.37285 -17.08087 -16.73357 -16.14128 -15.84877 -15.46021 -15.29056 -14.74972 -14.29036 -14.14955 -13.86736 -13.43311 -13.21566 -12.64343 -12.50937 -12.40647 -12.35978 -11.72460 -11.71679 -11.62118 -11.56347 -11.37538 -11.27885 -11.18020 -10.94361 -10.66037 -10.62096 -10.28801 -10.19829 -9.89399 -9.55877 -9.33729 -8.61416 -8.19056 -6.09432 -4.08536 0.64541 2.26781 3.20507 3.23282 3.29659 3.33604 3.66708 4.13129 4.23648 4.35778 4.37412 4.55811 4.67903 4.84086 4.99051 4.99834 5.10531 5.18658 5.27330 5.29212 5.45112 5.49032 5.53100 5.57537 5.62728 5.72220 5.86875 5.87499 6.12959 6.25922 6.61206 6.62624 6.68285 6.81628 7.02861 7.28561 7.55078 8.47522 8.96687 9.49124 11.04250 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.005453 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.001693 B = 5133.932906 C = 5588.398621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.141 3.859 4 N -0.975 5.975 5 C 0.225 3.775 6 C -0.528 4.528 7 H 0.079 0.921 8 C 0.073 3.927 9 N -0.894 5.894 10 Si 0.871 3.129 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.265 1.265 14 S 2.602 3.398 15 O -0.932 6.932 16 O -0.964 6.964 17 C -0.636 4.636 18 C -0.113 4.113 19 H 0.100 0.900 20 C -0.144 4.144 21 C 0.044 3.956 22 O -0.374 6.374 23 C 0.038 3.962 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.507 -7.927 8.267 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.186 4.186 3 C 0.015 3.985 4 N -0.811 5.811 5 C 0.102 3.898 6 C -0.568 4.568 7 H 0.097 0.903 8 C -0.130 4.130 9 N -0.533 5.533 10 Si 0.698 3.302 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.190 1.190 14 S 2.693 3.307 15 O -0.922 6.922 16 O -0.955 6.955 17 C -0.762 4.762 18 C -0.133 4.133 19 H 0.118 0.882 20 C -0.183 4.183 21 C -0.033 4.033 22 O -0.293 6.293 23 C -0.038 4.038 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.129 0.871 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.254 -6.839 8.556 18.779 hybrid contribution 0.483 -2.020 0.019 2.077 sum -14.770 -8.859 8.574 19.239 Atomic orbital electron populations 1.23905 0.95885 1.01883 1.02006 1.23682 0.96099 1.00241 0.98610 1.20427 0.91760 0.94279 0.91988 1.57236 1.22733 1.76000 1.25159 1.19485 0.78422 0.94410 0.97528 1.21343 0.93864 1.00877 1.40667 0.90268 1.24865 0.96515 0.97005 0.94569 1.69889 1.05260 1.34719 1.43390 0.86938 0.78861 0.85082 0.79322 1.20045 1.20829 1.19017 1.05306 0.74672 0.76071 0.74660 1.93651 1.41165 1.79667 1.77693 1.93523 1.63849 1.56504 1.81585 1.30866 1.14159 1.22026 1.09152 1.22453 0.99559 0.97553 0.93741 0.88189 1.22984 0.97905 0.98238 0.99146 1.23191 0.97070 0.83185 0.99811 1.88886 1.79295 1.26840 1.34255 1.23937 0.92081 1.01478 0.86350 0.88218 0.88672 0.87070 0.88219 0.89189 0.94883 0.95201 0.92510 0.85097 0.84742 0.90048 0.89887 0.92227 0.89671 0.87654 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 14.32 29.02 0.42 -1.73 16 2 C -0.17 -2.14 9.84 -36.02 -0.35 -2.49 16 3 C 0.14 2.28 6.09 -5.19 -0.03 2.25 16 4 N -0.97 -18.54 2.68 -116.95 -0.31 -18.86 16 5 C 0.22 5.04 4.08 -5.19 -0.02 5.02 16 6 C -0.53 -14.75 9.94 -34.44 -0.34 -15.09 16 7 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 8 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 9 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 10 Si 0.87 20.62 27.47 -169.99 -4.67 15.95 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 14 S 2.60 46.89 5.23 -107.50 -0.56 46.33 16 15 O -0.93 -21.05 16.99 -57.54 -0.98 -22.03 16 16 O -0.96 -18.14 15.56 -57.54 -0.90 -19.04 16 17 C -0.64 -7.95 5.55 37.16 0.21 -7.75 16 18 C -0.11 -1.36 3.09 -88.61 -0.27 -1.63 16 19 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 20 C -0.14 -1.35 6.60 -25.20 -0.17 -1.52 16 21 C 0.04 0.42 7.70 37.73 0.29 0.71 16 22 O -0.37 -4.79 11.52 -35.23 -0.41 -5.19 16 23 C 0.04 0.48 6.41 38.21 0.24 0.72 16 24 H 0.10 1.04 7.84 -52.49 -0.41 0.63 16 25 H 0.09 0.86 8.06 -52.49 -0.42 0.43 16 26 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 27 H 0.10 1.70 8.11 -51.93 -0.42 1.28 16 28 H 0.09 1.39 6.47 -51.93 -0.34 1.05 16 29 H 0.03 0.74 6.67 -51.93 -0.35 0.40 16 30 H 0.03 0.62 7.54 -51.93 -0.39 0.23 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.13 1.36 7.98 -51.93 -0.41 0.94 16 33 H 0.13 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.08 0.66 7.86 -51.93 -0.41 0.25 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.11 1.37 7.77 -51.93 -0.40 0.97 16 39 H 0.07 0.81 7.93 -51.93 -0.41 0.40 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -34.03 334.61 -8.23 -42.26 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.09 Total: 1.53 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -0.13 Total: -19.52 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.46 Total: -45.33 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -2.28 Total: -46.26 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Atomic # 16 Polarization: 46.89 SS G_CDS: -0.56 Total: 46.33 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.03 -8.23 -42.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292712171.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.343 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds