Wall clock time and date at job start Tue Mar 31 2020 04:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47048 * 2 1 4 4 C 1.37098 * 119.99547 * 264.76875 * 3 2 1 5 5 H 1.08003 * 119.99921 * 138.85363 * 4 3 2 6 6 C 1.38951 * 120.00322 * 318.85351 * 4 3 2 7 7 N 1.31415 * 119.99999 * 341.83400 * 6 4 3 8 8 Si 1.86801 * 120.00031 * 161.83369 * 6 4 3 9 9 H 1.48496 * 109.47278 * 59.99968 * 8 6 4 10 10 H 1.48498 * 109.46953 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47195 * 299.99926 * 8 6 4 12 12 C 1.34769 * 120.00096 * 84.77171 * 3 2 1 13 13 O 1.21291 * 119.99852 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00128 * 359.97438 * 12 3 2 15 15 S 1.81405 * 109.47127 * 179.97438 * 14 12 3 16 16 O 1.42097 * 108.57604 * 65.51630 * 15 14 12 17 17 O 1.42094 * 108.57794 * 294.48534 * 15 14 12 18 18 C 1.81400 * 101.92009 * 179.97438 * 15 14 12 19 19 C 1.54963 * 110.92360 * 66.54191 * 18 15 14 20 20 C 1.54272 * 104.16034 * 156.29217 * 19 18 15 21 21 C 1.53873 * 106.63927 * 336.44727 * 20 19 18 22 22 C 1.54268 * 106.60173 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47286 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47054 * 300.00018 * 1 2 3 25 25 H 1.08994 * 109.47366 * 59.99759 * 1 2 3 26 26 H 1.08999 * 109.46527 * 239.99574 * 2 1 3 27 27 H 1.09007 * 109.47140 * 120.00016 * 2 1 3 28 28 H 0.96997 * 119.99918 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47545 * 59.99872 * 14 12 3 30 30 H 1.08996 * 109.47160 * 299.99879 * 14 12 3 31 31 H 1.09001 * 110.67489 * 303.23504 * 18 15 14 32 32 H 1.09003 * 110.47872 * 37.64214 * 19 18 15 33 33 H 1.09001 * 110.53012 * 274.96953 * 19 18 15 34 34 H 1.09001 * 110.03266 * 217.13267 * 20 19 18 35 35 H 1.09009 * 110.02865 * 95.75385 * 20 19 18 36 36 H 1.09011 * 110.03069 * 119.26012 * 21 20 19 37 37 H 1.08995 * 110.02890 * 240.63655 * 21 20 19 38 38 H 1.08996 * 110.48724 * 142.29022 * 22 21 20 39 39 H 1.08995 * 110.48130 * 264.80283 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9913 -1.1824 5 1 2.0742 3.0218 -1.3536 6 6 3.0371 1.2841 -2.1606 7 7 3.6790 0.1816 -1.8452 8 14 3.0499 1.9004 -3.9240 9 1 3.6535 3.2563 -3.9701 10 1 3.8480 0.9738 -4.7663 11 1 1.6577 1.9606 -4.4374 12 6 2.1426 2.0520 1.1623 13 8 2.5474 3.1954 1.1623 14 6 1.7788 1.3815 2.4619 15 16 2.0542 2.5345 3.8350 16 8 1.1452 3.6189 3.7047 17 8 3.4463 2.8034 3.9281 18 6 1.5606 1.5365 5.2671 19 6 2.5337 0.3486 5.4756 20 6 2.3848 -0.0033 6.9703 21 6 1.8667 1.2644 7.6719 22 6 1.7191 2.3437 6.5795 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.1597 -0.3119 -2.5280 29 1 2.4002 0.4968 2.6007 30 1 0.7293 1.0883 2.4381 31 1 0.5365 1.1807 5.1536 32 1 3.5574 0.6510 5.2551 33 1 2.2424 -0.4978 4.8536 34 1 3.3513 -0.2907 7.3842 35 1 1.6696 -0.8167 7.0929 36 1 0.8996 1.0664 8.1344 37 1 2.5814 1.5917 8.4270 38 1 0.8337 2.9527 6.7621 39 1 2.6102 2.9700 6.5393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330660273.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:03 Heat of formation + Delta-G solvation = -111.304888 kcal Electronic energy + Delta-G solvation = -22076.444625 eV Core-core repulsion = 18725.384457 eV Total energy + Delta-G solvation = -3351.060167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.69418 -38.10169 -36.51818 -35.57705 -35.13055 -32.27674 -30.02436 -29.58515 -29.18804 -28.78191 -24.84916 -22.44622 -21.57365 -20.62634 -19.45069 -18.33605 -17.32600 -16.83462 -16.21221 -15.81299 -15.63079 -15.42208 -14.94586 -14.31279 -14.07204 -13.91651 -13.69160 -13.13434 -13.06471 -12.83880 -12.34748 -11.88507 -11.74805 -11.62500 -11.58176 -11.53623 -11.50040 -11.36891 -11.18368 -11.13723 -11.06850 -10.66624 -10.58652 -10.48002 -10.41027 -10.22735 -10.09876 -9.00906 -8.79695 -7.56650 -6.41716 -4.10698 0.25517 3.11692 3.16373 3.22597 3.26142 3.64868 3.80396 4.03375 4.13291 4.29521 4.52515 4.62317 4.71695 4.91206 5.03072 5.04613 5.14855 5.27044 5.33520 5.38691 5.45844 5.50782 5.62123 5.68777 5.79533 5.83504 5.86694 5.90300 6.07459 6.08210 6.18189 6.36578 6.76000 7.09091 7.51441 8.13364 8.35054 9.02600 9.23520 9.81058 10.63653 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.030078 B = 0.004533 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.693312 B = 6175.299529 C = 6455.702633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 N -0.424 5.424 4 C -0.314 4.314 5 H 0.093 0.907 6 C 0.041 3.959 7 N -0.869 5.869 8 Si 0.924 3.076 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.481 3.519 13 O -0.570 6.570 14 C -0.639 4.639 15 S 2.454 3.546 16 O -0.930 6.930 17 O -0.922 6.922 18 C -0.596 4.596 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.103 4.103 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.270 0.730 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 -6.208 14.240 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.142 5.142 4 C -0.442 4.442 5 H 0.111 0.889 6 C -0.164 4.164 7 N -0.505 5.505 8 Si 0.750 3.250 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.266 3.734 13 O -0.454 6.454 14 C -0.769 4.769 15 S 2.633 3.367 16 O -0.927 6.927 17 O -0.919 6.919 18 C -0.704 4.704 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.142 4.142 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.125 0.875 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.164 0.836 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.275 -4.950 14.081 15.830 hybrid contribution -0.425 -0.975 -0.836 1.353 sum -5.700 -5.925 13.245 15.589 Atomic orbital electron populations 1.22242 0.97975 1.00585 1.01765 1.21548 0.91822 0.85339 1.03763 1.43313 1.54812 1.11752 1.04298 1.19458 1.35473 0.98966 0.90267 0.88906 1.25480 0.93674 0.96419 1.00849 1.69913 1.28873 1.17382 1.34382 0.86047 0.78487 0.79027 0.81486 1.19471 1.20862 1.19726 1.19043 0.83038 0.87780 0.83497 1.90671 1.50703 1.18013 1.86051 1.30733 1.11714 1.18632 1.15867 1.07321 0.75899 0.76829 0.76672 1.93527 1.66330 1.47757 1.85059 1.93536 1.30718 1.82460 1.85233 1.31520 1.10088 1.11524 1.17240 1.22309 0.98752 0.95529 0.98348 1.22083 1.01525 0.97774 0.94249 1.22099 1.01450 0.94575 0.97464 1.22150 1.03288 0.97496 0.91251 0.92792 0.93919 0.92044 0.87480 0.93132 0.91965 0.83619 0.84060 0.84412 0.89255 0.89873 0.91176 0.91446 0.91425 0.91201 0.89828 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.15 37.16 0.38 -2.45 16 2 C 0.10 2.07 5.41 -4.04 -0.02 2.04 16 3 N -0.42 -10.73 2.50 -114.81 -0.29 -11.02 16 4 C -0.31 -8.72 8.84 -14.93 -0.13 -8.85 16 5 H 0.09 2.68 7.82 -52.48 -0.41 2.27 16 6 C 0.04 1.08 4.95 -17.47 -0.09 0.99 16 7 N -0.87 -23.11 11.61 55.50 0.64 -22.46 16 8 Si 0.92 20.46 29.59 -169.99 -5.03 15.43 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 C 0.48 12.05 7.61 -10.99 -0.08 11.96 16 13 O -0.57 -16.72 15.54 2.55 0.04 -16.68 16 14 C -0.64 -11.23 4.74 36.00 0.17 -11.06 16 15 S 2.45 43.14 3.57 -107.50 -0.38 42.76 16 16 O -0.93 -19.52 17.94 -59.53 -1.07 -20.59 16 17 O -0.92 -19.52 17.30 -59.52 -1.03 -20.55 16 18 C -0.60 -6.76 3.29 -24.70 -0.08 -6.84 16 19 C -0.11 -1.12 6.05 -25.03 -0.15 -1.27 16 20 C -0.12 -0.98 6.80 -25.61 -0.17 -1.16 16 21 C -0.12 -0.99 6.80 -25.61 -0.17 -1.16 16 22 C -0.10 -1.10 6.28 -25.07 -0.16 -1.26 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.66 6.60 -51.93 -0.34 0.31 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.11 2.45 5.76 -51.93 -0.30 2.15 16 27 H 0.05 0.92 6.66 -51.92 -0.35 0.57 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.15 2.11 7.34 -51.92 -0.38 1.73 16 30 H 0.14 1.94 6.54 -51.93 -0.34 1.60 16 31 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 0.99 7.51 -51.93 -0.39 0.60 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 36 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -36.69 328.15 -8.55 -45.24 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.87 Total: 1.99 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -0.52 Total: -19.06 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.36 Total: -33.48 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -2.06 Total: -57.82 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Atomic # 16 Polarization: 43.14 SS G_CDS: -0.38 Total: 42.76 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.69 -8.55 -45.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330660273.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.062 kcal (2) G-P(sol) polarization free energy of solvation -36.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds