Wall clock time and date at job start Tue Mar 31 2020 04:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47048 * 2 1 4 4 C 1.37098 * 119.99547 * 264.76875 * 3 2 1 5 5 H 1.08003 * 119.99921 * 138.85363 * 4 3 2 6 6 C 1.38951 * 120.00322 * 318.85351 * 4 3 2 7 7 N 1.31415 * 119.99999 * 341.83400 * 6 4 3 8 8 Si 1.86801 * 120.00031 * 161.83369 * 6 4 3 9 9 H 1.48496 * 109.47278 * 59.99968 * 8 6 4 10 10 H 1.48498 * 109.46953 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47195 * 299.99926 * 8 6 4 12 12 C 1.34769 * 120.00096 * 84.77171 * 3 2 1 13 13 O 1.21291 * 119.99852 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00128 * 359.97438 * 12 3 2 15 15 S 1.81405 * 109.47127 * 179.97438 * 14 12 3 16 16 O 1.42097 * 108.57604 * 65.51630 * 15 14 12 17 17 O 1.42094 * 108.57794 * 294.48534 * 15 14 12 18 18 C 1.81400 * 101.92009 * 179.97438 * 15 14 12 19 19 C 1.54963 * 110.92360 * 66.54191 * 18 15 14 20 20 C 1.54272 * 104.16034 * 156.29217 * 19 18 15 21 21 C 1.53873 * 106.63927 * 336.44727 * 20 19 18 22 22 C 1.54268 * 106.60173 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47286 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47054 * 300.00018 * 1 2 3 25 25 H 1.08994 * 109.47366 * 59.99759 * 1 2 3 26 26 H 1.08999 * 109.46527 * 239.99574 * 2 1 3 27 27 H 1.09007 * 109.47140 * 120.00016 * 2 1 3 28 28 H 0.96997 * 119.99918 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47545 * 59.99872 * 14 12 3 30 30 H 1.08996 * 109.47160 * 299.99879 * 14 12 3 31 31 H 1.09001 * 110.67489 * 303.23504 * 18 15 14 32 32 H 1.09003 * 110.47872 * 37.64214 * 19 18 15 33 33 H 1.09001 * 110.53012 * 274.96953 * 19 18 15 34 34 H 1.09001 * 110.03266 * 217.13267 * 20 19 18 35 35 H 1.09009 * 110.02865 * 95.75385 * 20 19 18 36 36 H 1.09011 * 110.03069 * 119.26012 * 21 20 19 37 37 H 1.08995 * 110.02890 * 240.63655 * 21 20 19 38 38 H 1.08996 * 110.48724 * 142.29022 * 22 21 20 39 39 H 1.08995 * 110.48130 * 264.80283 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9913 -1.1824 5 1 2.0742 3.0218 -1.3536 6 6 3.0371 1.2841 -2.1606 7 7 3.6790 0.1816 -1.8452 8 14 3.0499 1.9004 -3.9240 9 1 3.6535 3.2563 -3.9701 10 1 3.8480 0.9738 -4.7663 11 1 1.6577 1.9606 -4.4374 12 6 2.1426 2.0520 1.1623 13 8 2.5474 3.1954 1.1623 14 6 1.7788 1.3815 2.4619 15 16 2.0542 2.5345 3.8350 16 8 1.1452 3.6189 3.7047 17 8 3.4463 2.8034 3.9281 18 6 1.5606 1.5365 5.2671 19 6 2.5337 0.3486 5.4756 20 6 2.3848 -0.0033 6.9703 21 6 1.8667 1.2644 7.6719 22 6 1.7191 2.3437 6.5795 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.1597 -0.3119 -2.5280 29 1 2.4002 0.4968 2.6007 30 1 0.7293 1.0883 2.4381 31 1 0.5365 1.1807 5.1536 32 1 3.5574 0.6510 5.2551 33 1 2.2424 -0.4978 4.8536 34 1 3.3513 -0.2907 7.3842 35 1 1.6696 -0.8167 7.0929 36 1 0.8996 1.0664 8.1344 37 1 2.5814 1.5917 8.4270 38 1 0.8337 2.9527 6.7621 39 1 2.6102 2.9700 6.5393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330660273.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:56 Heat of formation + Delta-G solvation = -138.851725 kcal Electronic energy + Delta-G solvation = -22077.639145 eV Core-core repulsion = 18725.384457 eV Total energy + Delta-G solvation = -3352.254688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 4.91 seconds Orbital eigenvalues (eV) -40.57962 -38.89661 -37.96940 -37.19618 -36.89885 -34.21331 -31.51469 -31.17556 -30.02273 -29.64829 -26.80074 -24.04640 -22.57765 -21.45334 -21.01235 -19.68368 -18.94985 -18.45001 -17.57104 -17.29416 -17.11659 -16.83722 -16.42932 -15.82329 -15.78876 -15.00867 -14.67037 -14.55196 -14.45788 -14.00510 -13.93010 -13.62401 -13.30547 -13.10956 -13.03508 -12.90714 -12.72007 -12.55719 -12.39738 -12.18904 -12.13341 -12.08148 -12.03706 -11.89171 -11.83696 -11.24505 -11.23853 -10.93768 -10.76437 -9.52716 -8.42732 -6.20516 -1.05682 1.36102 1.39055 1.49503 1.81877 1.83684 2.22123 2.57155 2.90584 2.96735 3.08570 3.35183 3.51725 3.73048 3.88185 3.99937 4.18008 4.36585 4.37011 4.41168 4.44398 4.47587 4.59122 4.76816 4.81046 4.82074 5.00444 5.03996 5.08284 5.22448 5.27403 5.28255 5.39799 5.47961 5.52072 6.13164 6.38050 7.03452 7.28994 7.86498 8.61217 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.030078 B = 0.004533 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.693312 B = 6175.299529 C = 6455.702633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 N -0.435 5.435 4 C -0.354 4.354 5 H 0.062 0.938 6 C 0.010 3.990 7 N -0.885 5.885 8 Si 0.984 3.016 9 H -0.280 1.280 10 H -0.267 1.267 11 H -0.260 1.260 12 C 0.455 3.545 13 O -0.633 6.633 14 C -0.631 4.631 15 S 2.428 3.572 16 O -0.981 6.981 17 O -0.979 6.979 18 C -0.548 4.548 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.120 4.120 23 H 0.094 0.906 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.277 0.723 29 H 0.180 0.820 30 H 0.185 0.815 31 H 0.184 0.816 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.642 -9.522 15.908 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.030 4.030 3 N -0.153 5.153 4 C -0.482 4.482 5 H 0.080 0.920 6 C -0.194 4.194 7 N -0.521 5.521 8 Si 0.807 3.193 9 H -0.206 1.206 10 H -0.191 1.191 11 H -0.184 1.184 12 C 0.244 3.756 13 O -0.522 6.522 14 C -0.760 4.760 15 S 2.616 3.384 16 O -0.978 6.978 17 O -0.976 6.976 18 C -0.662 4.662 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.159 4.159 23 H 0.112 0.888 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.198 0.802 30 H 0.203 0.797 31 H 0.201 0.799 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.018 -8.271 15.683 19.068 hybrid contribution 0.140 0.001 -1.248 1.256 sum -6.878 -8.269 14.434 18.001 Atomic orbital electron populations 1.22173 0.94798 1.03129 1.01647 1.21781 0.94471 0.82743 1.04042 1.43653 1.54493 1.13269 1.03839 1.19409 1.37662 0.98525 0.92605 0.92022 1.26191 0.92662 0.96452 1.04091 1.69961 1.28621 1.17850 1.35666 0.85152 0.79140 0.78059 0.76939 1.20599 1.19101 1.18441 1.20100 0.82271 0.87413 0.85854 1.90623 1.53202 1.20878 1.87462 1.30611 1.14988 1.18895 1.11527 1.07675 0.74539 0.77759 0.78471 1.93454 1.66573 1.51420 1.86396 1.93461 1.33609 1.84148 1.86353 1.31169 1.12700 1.10340 1.12007 1.22563 0.97420 0.95525 1.00678 1.22134 1.02726 0.98274 0.92335 1.22143 1.02972 0.93532 0.96642 1.22404 1.03299 0.98554 0.91666 0.88776 0.92164 0.94142 0.89825 0.90160 0.91316 0.80229 0.79714 0.79898 0.91033 0.86813 0.90565 0.89040 0.89271 0.90542 0.88617 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 10.15 71.98 0.73 -4.24 16 2 C 0.09 3.71 5.41 86.38 0.47 4.18 16 3 N -0.44 -22.50 2.50 -635.55 -1.59 -24.10 16 4 C -0.35 -20.54 8.84 84.04 0.74 -19.80 16 5 H 0.06 3.85 7.82 -2.91 -0.02 3.83 16 6 C 0.01 0.53 4.95 84.93 0.42 0.95 16 7 N -0.88 -47.31 11.61 21.66 0.25 -47.06 16 8 Si 0.98 42.59 29.59 68.60 2.03 44.62 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 12 C 0.46 23.48 7.61 87.66 0.67 24.15 16 13 O -0.63 -39.62 15.54 -0.19 0.00 -39.63 16 14 C -0.63 -21.28 4.74 71.23 0.34 -20.94 16 15 S 2.43 86.01 3.57 -56.49 -0.20 85.81 16 16 O -0.98 -42.83 17.94 -125.74 -2.26 -45.08 16 17 O -0.98 -43.75 17.30 -125.76 -2.18 -45.93 16 18 C -0.55 -10.59 3.29 31.91 0.11 -10.48 16 19 C -0.12 -1.99 6.05 31.70 0.19 -1.80 16 20 C -0.12 -1.37 6.80 31.32 0.21 -1.16 16 21 C -0.11 -1.45 6.80 31.32 0.21 -1.23 16 22 C -0.12 -2.27 6.28 31.67 0.20 -2.08 16 23 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.06 1.65 6.60 -2.38 -0.02 1.63 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 3.77 5.76 -2.39 -0.01 3.76 16 27 H 0.08 2.67 6.66 -2.38 -0.02 2.66 16 28 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 29 H 0.18 4.68 7.34 -2.39 -0.02 4.66 16 30 H 0.19 4.41 6.54 -2.39 -0.02 4.39 16 31 H 0.18 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 1.45 7.51 -2.39 -0.02 1.43 16 33 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.40 8.05 -2.39 -0.02 1.38 16 Total: -1.00 -88.91 328.15 1.38 -87.53 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 1.04 Total: 16.28 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 4.29 Total: -32.45 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.34 Total: -71.15 kcal Atomic # 8 Polarization: -126.20 SS G_CDS: -4.44 Total: -130.64 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 86.01 SS G_CDS: -0.20 Total: 85.81 kcal Total: -88.91 1.38 -87.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330660273.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.324 kcal (2) G-P(sol) polarization free energy of solvation -88.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.91 seconds