Wall clock time and date at job start Tue Mar 31 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00312 * 2 1 4 4 H 1.48502 * 109.47237 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47471 * 300.00027 * 3 2 1 6 6 H 1.48499 * 109.47458 * 60.00349 * 3 2 1 7 7 C 1.37880 * 119.99448 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99922 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00227 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00127 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99670 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00258 * 180.02562 * 11 10 9 14 14 C 1.52995 * 109.47367 * 179.97438 * 13 11 10 15 15 S 1.81397 * 109.47346 * 179.97438 * 14 13 11 16 16 O 1.42099 * 108.57771 * 65.51586 * 15 14 13 17 17 O 1.42103 * 108.57985 * 294.48973 * 15 14 13 18 18 C 1.81398 * 101.92179 * 180.02562 * 15 14 13 19 19 C 1.54961 * 110.92525 * 66.54120 * 18 15 14 20 20 C 1.54270 * 104.16191 * 156.29525 * 19 18 15 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.97005 * 119.99676 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46739 * 60.00246 * 9 7 2 25 25 H 1.08997 * 109.47112 * 300.00353 * 9 7 2 26 26 H 0.96997 * 119.99879 * 0.02562 * 10 9 7 27 27 H 1.09001 * 109.47198 * 60.00225 * 13 11 10 28 28 H 1.08997 * 109.47177 * 300.00012 * 13 11 10 29 29 H 1.09007 * 109.47009 * 59.99657 * 14 13 11 30 30 H 1.09003 * 109.47325 * 300.00505 * 14 13 11 31 31 H 1.09001 * 110.67506 * 303.23275 * 18 15 14 32 32 H 1.08997 * 110.47708 * 37.64123 * 19 18 15 33 33 H 1.09002 * 110.53308 * 274.97515 * 19 18 15 34 34 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 35 35 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 36 36 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 37 37 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 38 38 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 39 39 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 1.7535 -4.8835 -0.0011 12 8 0.5611 -5.1050 -0.0020 13 6 2.7327 -6.0289 -0.0005 14 6 1.9676 -7.3539 -0.0006 15 16 3.1463 -8.7327 -0.0007 16 8 3.8648 -8.7142 1.2252 17 8 3.8650 -8.7140 -1.2264 18 6 2.0407 -10.1708 -0.0016 19 6 1.2470 -10.2579 -1.3297 20 6 0.8656 -11.7483 -1.4445 21 6 1.8868 -12.5307 -0.6002 22 6 2.8544 -11.4889 -0.0017 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5566 -0.8903 25 1 0.6245 -2.5571 0.8896 26 1 3.1565 -3.4356 -0.0002 27 1 3.3586 -5.9714 0.8900 28 1 3.3600 -5.9711 -0.8899 29 1 1.3413 -7.4117 -0.8909 30 1 1.3405 -7.4115 0.8891 31 1 1.3627 -10.1356 0.8512 32 1 1.8746 -9.9590 -2.1692 33 1 0.3520 -9.6377 -1.2816 34 1 0.9183 -12.0682 -2.4852 35 1 -0.1402 -11.9073 -1.0558 36 1 1.3766 -13.0688 0.1987 37 1 2.4345 -13.2309 -1.2310 38 1 3.1319 -11.7659 1.0152 39 1 3.7429 -11.3909 -0.6254 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330800573.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:50 Heat of formation + Delta-G solvation = -160.931041 kcal Electronic energy + Delta-G solvation = -20727.169730 eV Core-core repulsion = 17373.957611 eV Total energy + Delta-G solvation = -3353.212119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.59935 -38.89044 -38.00861 -37.10581 -36.22835 -34.45026 -34.07352 -30.20167 -29.81340 -29.45779 -26.33571 -24.20309 -22.31414 -21.42179 -21.18340 -19.80717 -19.15287 -18.24307 -17.58480 -17.30527 -17.11681 -16.78452 -16.52655 -16.27897 -16.02882 -15.04991 -14.94197 -14.60955 -14.47476 -14.05796 -13.98136 -13.78976 -13.57252 -13.18969 -13.08210 -12.89509 -12.77253 -12.55387 -12.46900 -12.23775 -12.21338 -12.08371 -12.02246 -11.83739 -11.47444 -11.28543 -11.26790 -10.83262 -10.81922 -9.87261 -8.31134 -6.47263 -1.03299 1.42966 1.43519 1.57211 1.67826 1.75015 2.27259 2.43203 2.71687 2.96394 3.04115 3.34501 3.41160 3.51373 3.83086 3.90721 3.95738 4.33971 4.34715 4.39863 4.40735 4.49956 4.55350 4.74880 4.79499 4.87656 5.02541 5.07786 5.09595 5.21131 5.22296 5.23624 5.43999 5.45993 5.65539 5.82961 6.63582 6.84132 7.21393 7.41980 8.81246 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.041789 B = 0.002812 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.875904 B = 9956.490233 C =10335.822731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.264 3.736 10 N -0.709 5.709 11 C 0.503 3.497 12 O -0.593 6.593 13 C -0.134 4.134 14 C -0.594 4.594 15 S 2.433 3.567 16 O -0.971 6.971 17 O -0.965 6.965 18 C -0.562 4.562 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.115 4.115 23 H 0.269 0.731 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.410 0.590 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.737 -24.495 -1.078 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.141 3.859 10 N -0.359 5.359 11 C 0.289 3.711 12 O -0.475 6.475 13 C -0.175 4.175 14 C -0.723 4.723 15 S 2.621 3.379 16 O -0.968 6.968 17 O -0.962 6.962 18 C -0.675 4.675 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.154 4.154 23 H 0.078 0.922 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.246 0.754 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.185 0.815 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.712 -24.461 -1.068 25.142 hybrid contribution -0.569 1.226 0.086 1.354 sum 5.144 -23.235 -0.982 23.818 Atomic orbital electron populations 1.70136 1.08207 1.28528 1.50022 1.26053 0.95799 1.03878 0.93859 0.85113 0.79052 0.77359 0.77713 1.17774 1.20413 1.20413 1.21661 0.94341 0.90636 1.52813 0.89869 1.18594 0.88715 0.84239 0.94366 1.46246 1.11448 1.05637 1.72560 1.21021 0.89625 0.84725 0.75755 1.90625 1.18925 1.85462 1.52514 1.21459 0.97915 0.90318 1.07780 1.30142 1.16326 1.11712 1.14096 1.07534 0.77860 0.78601 0.73935 1.93537 1.70085 1.86554 1.46626 1.93534 1.69803 1.86410 1.46439 1.31135 1.13488 1.13849 1.09005 1.22470 1.00503 1.00037 0.92923 1.22134 0.99820 0.92902 1.01102 1.22135 0.96461 0.97261 0.99781 1.22344 0.97994 0.91584 1.03480 0.92214 0.99115 0.99145 0.75428 0.85558 0.85463 0.83399 0.83411 0.81494 0.89881 0.88433 0.90600 0.90377 0.90209 0.90444 0.88838 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.98 42.28 29.54 68.60 2.03 44.31 16 4 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.56 -30.19 9.28 25.60 0.24 -29.95 16 8 H 0.08 4.10 7.60 -2.91 -0.02 4.07 16 9 C 0.26 14.35 5.43 85.63 0.46 14.81 16 10 N -0.71 -29.63 5.55 -466.79 -2.59 -32.22 16 11 C 0.50 19.35 7.83 87.65 0.69 20.04 16 12 O -0.59 -27.63 15.98 -3.04 -0.05 -27.68 16 13 C -0.13 -3.47 5.71 29.84 0.17 -3.30 16 14 C -0.59 -12.43 4.94 71.98 0.36 -12.07 16 15 S 2.43 46.87 4.32 -56.49 -0.24 46.63 16 16 O -0.97 -24.78 18.10 -127.37 -2.31 -27.09 16 17 O -0.96 -24.09 17.45 -127.37 -2.22 -26.32 16 18 C -0.56 -7.19 3.29 31.91 0.11 -7.09 16 19 C -0.12 -1.47 6.05 31.70 0.19 -1.27 16 20 C -0.12 -1.21 6.80 31.32 0.21 -1.00 16 21 C -0.12 -1.14 6.80 31.32 0.21 -0.93 16 22 C -0.12 -1.45 6.28 31.67 0.20 -1.25 16 23 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 26 H 0.41 14.12 8.32 -92.71 -0.77 13.35 16 27 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.15 2.84 8.02 -2.39 -0.02 2.82 16 30 H 0.15 2.82 8.10 -2.39 -0.02 2.80 16 31 H 0.17 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.11 7.50 -2.39 -0.02 1.09 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.00 8.05 -2.39 -0.02 0.98 16 Total: -1.00 -79.80 338.88 -1.53 -81.34 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.27 Total: 17.86 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 3.30 Total: -21.34 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -2.30 Total: -87.70 kcal Atomic # 8 Polarization: -76.51 SS G_CDS: -4.58 Total: -81.09 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 46.87 SS G_CDS: -0.24 Total: 46.63 kcal Total: -79.80 -1.53 -81.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330800573.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.595 kcal (2) G-P(sol) polarization free energy of solvation -79.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds