Wall clock time and date at job start Tue Mar 31 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00367 * 2 1 4 4 H 1.48504 * 109.47036 * 239.99591 * 3 2 1 5 5 H 1.48498 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47357 * 119.99960 * 3 2 1 7 7 C 1.37874 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99971 * 173.11612 * 7 2 1 9 9 C 1.50703 * 120.00187 * 353.11462 * 7 2 1 10 10 C 1.52995 * 115.55058 * 84.82238 * 9 7 2 11 11 S 1.81402 * 109.46981 * 39.94024 * 10 9 7 12 12 O 1.42104 * 110.54266 * 61.91296 * 11 10 9 13 13 O 1.42099 * 110.54513 * 285.15841 * 11 10 9 14 14 N 1.65604 * 104.44762 * 173.53428 * 11 10 9 15 15 C 1.47423 * 125.64920 * 270.03997 * 14 11 10 16 16 C 1.54914 * 104.83115 * 204.09238 * 15 14 11 17 17 C 1.55157 * 101.58350 * 322.99067 * 16 15 14 18 18 C 1.47026 * 125.64769 * 90.00174 * 14 11 10 19 19 H 1.09006 * 109.88130 * 59.40344 * 18 14 11 20 20 C 1.52998 * 109.88194 * 298.39338 * 18 14 11 21 21 O 1.42899 * 109.47283 * 294.99858 * 20 18 14 22 22 C 1.53003 * 117.51657 * 230.52248 * 9 7 2 23 23 C 1.52995 * 117.49807 * 299.14994 * 9 7 2 24 24 H 0.97006 * 119.99459 * 5.03569 * 1 2 3 25 25 H 1.08997 * 109.47168 * 279.94424 * 10 9 7 26 26 H 1.08996 * 109.47257 * 159.93996 * 10 9 7 27 27 H 1.09002 * 110.36569 * 322.93389 * 15 14 11 28 28 H 1.09010 * 110.36372 * 85.14555 * 15 14 11 29 29 H 1.08999 * 111.00068 * 81.06588 * 16 15 14 30 30 H 1.08998 * 111.00049 * 204.91320 * 16 15 14 31 31 H 1.09000 * 110.72055 * 277.14193 * 17 16 15 32 32 H 1.08996 * 110.71518 * 153.86302 * 17 16 15 33 33 H 1.08999 * 109.47078 * 175.00143 * 20 18 14 34 34 H 1.09000 * 109.47124 * 54.99869 * 20 18 14 35 35 H 0.96697 * 114.00796 * 179.97438 * 21 20 18 36 36 H 1.08999 * 117.49639 * 214.96763 * 22 9 7 37 37 H 1.08995 * 117.50302 * 359.97438 * 22 9 7 38 38 H 1.08997 * 117.50280 * 359.97438 * 23 9 7 39 39 H 1.09004 * 117.49905 * 144.99536 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0786 -1.1976 -0.1116 9 6 1.2590 -2.4944 0.1576 10 6 0.6824 -3.0842 -1.1310 11 16 1.8704 -2.8597 -2.4833 12 8 3.0802 -3.5511 -2.2042 13 8 1.8832 -1.5064 -2.9164 14 7 1.2101 -3.6894 -3.7554 15 6 1.4465 -5.1101 -4.0700 16 6 1.1585 -5.2335 -5.5871 17 6 -0.0377 -4.2601 -5.7574 18 6 0.2904 -3.1312 -4.7575 19 1 0.7679 -2.3002 -5.2767 20 6 -0.9924 -2.6507 -4.0760 21 8 -1.6832 -3.7701 -3.5176 22 6 1.7625 -3.4740 1.2195 23 6 0.4622 -2.7006 1.4473 24 1 -0.4850 0.8369 -0.0737 25 1 -0.2496 -2.5759 -1.3780 26 1 0.4897 -4.1477 -0.9894 27 1 2.4812 -5.3787 -3.8572 28 1 0.7660 -5.7431 -3.5003 29 1 2.0157 -4.9058 -6.1754 30 1 0.8734 -6.2524 -5.8490 31 1 -0.9744 -4.7501 -5.4920 32 1 -0.0783 -3.8735 -6.7757 33 1 -1.6311 -2.1587 -4.8095 34 1 -0.7406 -1.9467 -3.2829 35 1 -2.5077 -3.5394 -3.0683 36 1 1.6829 -4.5388 1.0001 37 1 2.6333 -3.1784 1.8045 38 1 0.4775 -1.8960 2.1825 39 1 -0.4729 -3.2564 1.3778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346474694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:22 Heat of formation + Delta-G solvation = -121.315176 kcal Electronic energy + Delta-G solvation = -23050.492009 eV Core-core repulsion = 19698.997763 eV Total energy + Delta-G solvation = -3351.494246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -39.88320 -38.56880 -37.95061 -36.92143 -36.70092 -34.12889 -31.80315 -31.12523 -29.88001 -27.52926 -25.99795 -23.02115 -22.86857 -21.95919 -21.20721 -19.67202 -18.87481 -18.33973 -17.97638 -17.20456 -16.80397 -16.67396 -16.17573 -15.63051 -15.43203 -15.04250 -14.79574 -14.47942 -14.08043 -13.89595 -13.75680 -13.61007 -13.15722 -13.05548 -12.95969 -12.88614 -12.84433 -12.44824 -12.43100 -12.11698 -12.00386 -11.92285 -11.66622 -11.59475 -11.48988 -10.92989 -10.85601 -10.53836 -10.10349 -9.73858 -8.25398 -6.43159 -0.48502 1.33755 1.37917 1.43812 2.05102 2.37344 3.03650 3.08554 3.20478 3.36178 3.45415 3.62149 3.95211 4.01879 4.07543 4.25092 4.29211 4.41179 4.46937 4.56789 4.59600 4.61576 4.73083 4.85343 4.94803 4.98741 5.04641 5.08924 5.13162 5.17720 5.27484 5.37140 5.51996 5.57802 5.64715 5.65583 6.18166 6.65025 6.88880 7.34074 8.81423 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.006926 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.727602 B = 4041.947905 C = 4225.919583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.061 3.939 3 Si 0.925 3.075 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.561 4.561 8 H 0.045 0.955 9 C 0.013 3.987 10 C -0.542 4.542 11 S 2.642 3.358 12 O -1.004 7.004 13 O -0.985 6.985 14 N -1.014 6.014 15 C 0.104 3.896 16 C -0.119 4.119 17 C -0.109 4.109 18 C 0.138 3.862 19 H 0.081 0.919 20 C 0.052 3.948 21 O -0.568 6.568 22 C -0.193 4.193 23 C -0.138 4.138 24 H 0.267 0.733 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.022 0.978 35 H 0.392 0.608 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 -10.024 -10.689 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.144 4.144 3 Si 0.750 3.250 4 H -0.206 1.206 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.599 4.599 8 H 0.063 0.937 9 C 0.011 3.989 10 C -0.675 4.675 11 S 2.743 3.257 12 O -0.995 6.995 13 O -0.975 6.975 14 N -0.852 5.852 15 C -0.020 4.020 16 C -0.158 4.158 17 C -0.148 4.148 18 C 0.032 3.968 19 H 0.099 0.901 20 C -0.027 4.027 21 O -0.375 6.375 22 C -0.230 4.230 23 C -0.176 4.176 24 H 0.077 0.923 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.040 0.960 35 H 0.241 0.759 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.631 -9.700 -10.857 15.277 hybrid contribution -0.487 1.436 0.901 1.764 sum -5.118 -8.264 -9.956 13.914 Atomic orbital electron populations 1.69976 1.06540 1.28012 1.46955 1.25412 0.95573 1.01342 0.92114 0.86114 0.79609 0.80369 0.78903 1.20590 1.19203 1.18836 1.20697 0.92882 0.90925 1.55373 0.93691 1.18354 1.00333 0.94010 0.86204 1.29844 1.15501 1.07764 1.14350 1.03721 0.75224 0.72369 0.74434 1.93404 1.44381 1.75779 1.85950 1.93447 1.87257 1.36187 1.80622 1.58757 1.62384 1.22014 1.42084 1.22256 1.01087 0.80200 0.98495 1.22760 0.98487 1.01486 0.93079 1.22606 0.99688 0.94403 0.98075 1.21691 0.87460 0.98396 0.89221 0.90060 1.22663 0.94339 0.88383 0.97330 1.86400 1.41292 1.33342 1.76483 1.23206 0.98104 0.96782 1.04916 1.22459 0.93659 1.00880 1.00641 0.92342 0.85975 0.85819 0.91387 0.90627 0.90655 0.87304 0.88796 0.88289 0.89620 0.95983 0.75870 0.88353 0.90092 0.91534 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.98 12.95 21.45 0.28 -48.70 16 2 C 0.06 3.43 5.39 84.65 0.46 3.89 16 3 Si 0.93 45.34 29.55 68.60 2.03 47.36 16 4 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 5 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.56 -32.11 6.91 25.60 0.18 -31.93 16 8 H 0.04 2.70 7.82 -2.91 -0.02 2.67 16 9 C 0.01 0.65 1.64 -52.93 -0.09 0.56 16 10 C -0.54 -23.64 6.24 71.98 0.45 -23.19 16 11 S 2.64 120.35 4.26 -56.49 -0.24 120.11 16 12 O -1.00 -50.23 17.28 -127.65 -2.21 -52.43 16 13 O -0.98 -52.08 16.62 -127.65 -2.12 -54.20 16 14 N -1.01 -34.51 3.28 -484.24 -1.59 -36.10 16 15 C 0.10 2.80 7.07 86.86 0.61 3.42 16 16 C -0.12 -2.25 7.08 31.99 0.23 -2.03 16 17 C -0.11 -2.09 6.36 31.78 0.20 -1.89 16 18 C 0.14 3.90 3.16 45.34 0.14 4.04 16 19 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 20 C 0.05 1.42 6.65 71.98 0.48 1.90 16 21 O -0.57 -13.61 12.41 -148.98 -1.85 -15.46 16 22 C -0.19 -8.43 9.88 30.59 0.30 -8.13 16 23 C -0.14 -6.27 9.49 30.59 0.29 -5.98 16 24 H 0.27 14.13 8.32 -92.70 -0.77 13.36 16 25 H 0.12 5.40 6.83 -2.39 -0.02 5.38 16 26 H 0.12 4.55 7.95 -2.39 -0.02 4.53 16 27 H 0.07 1.94 7.67 -2.39 -0.02 1.92 16 28 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.72 6.95 -2.39 -0.02 1.70 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.02 0.77 6.37 -2.39 -0.02 0.75 16 35 H 0.39 6.67 9.12 -74.06 -0.68 5.99 16 36 H 0.10 3.68 8.08 -2.39 -0.02 3.66 16 37 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 38 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -73.10 329.91 -2.07 -75.17 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.37 Total: 23.58 kcal Atomic # 6 Polarization: -62.58 SS G_CDS: 3.25 Total: -59.33 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.31 Total: -84.80 kcal Atomic # 8 Polarization: -115.91 SS G_CDS: -6.18 Total: -122.09 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 120.35 SS G_CDS: -0.24 Total: 120.11 kcal Total: -73.10 -2.07 -75.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346474694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.146 kcal (2) G-P(sol) polarization free energy of solvation -73.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds