Wall clock time and date at job start Tue Mar 31 2020 04:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42898 * 109.47280 * 2 1 4 4 C 1.42907 * 114.00255 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.57101 * 29.84747 * 4 3 2 6 6 C 1.53094 * 109.52172 * 269.68888 * 4 3 2 7 7 O 1.42899 * 109.41475 * 182.48060 * 6 4 3 8 8 C 1.42903 * 114.09390 * 61.16141 * 7 6 4 9 9 C 1.53089 * 109.41371 * 298.83833 * 8 7 6 10 10 C 1.53171 * 109.52579 * 150.00169 * 4 3 2 11 11 H 1.09007 * 109.54126 * 56.92762 * 10 4 3 12 12 N 1.46500 * 109.54436 * 296.75481 * 10 4 3 13 13 C 1.34779 * 120.00169 * 154.99604 * 12 10 4 14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 10 16 16 S 1.81000 * 109.46881 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99929 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99720 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99847 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00398 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47405 * 89.99756 * 21 19 17 23 23 H 1.48503 * 109.46936 * 210.00169 * 21 19 17 24 24 H 1.48506 * 109.47119 * 329.99794 * 21 19 17 25 25 H 1.09006 * 109.47272 * 59.99440 * 1 2 3 26 26 H 1.08990 * 109.47415 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46833 * 299.99663 * 1 2 3 28 28 H 1.09006 * 109.46797 * 240.00884 * 2 1 3 29 29 H 1.08992 * 109.47324 * 120.00654 * 2 1 3 30 30 H 1.09002 * 109.48089 * 302.46866 * 6 4 3 31 31 H 1.08999 * 109.47828 * 62.48722 * 6 4 3 32 32 H 1.08998 * 109.48559 * 58.82159 * 8 7 6 33 33 H 1.09002 * 109.48093 * 178.84555 * 8 7 6 34 34 H 1.09000 * 109.52512 * 297.69988 * 9 8 7 35 35 H 1.09009 * 109.52516 * 177.51972 * 9 8 7 36 36 H 0.96996 * 119.99986 * 335.00202 * 12 10 4 37 37 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 38 38 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 39 39 H 0.96996 * 120.00393 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8650 0.6010 -0.5121 6 6 3.9409 1.5081 1.4421 7 8 5.3596 1.6790 1.4390 8 6 5.8001 2.8889 0.8191 9 6 5.3648 2.8963 -0.6486 10 6 3.8422 2.7470 -0.7223 11 1 3.3669 3.6023 -0.2420 12 7 3.4239 2.6775 -2.1246 13 6 3.2074 3.8115 -2.8202 14 8 3.3593 4.8893 -2.2854 15 6 2.7765 3.7400 -4.2625 16 16 2.5699 5.4159 -4.9142 17 6 2.0780 5.0439 -6.5648 18 1 1.9900 4.0157 -6.8833 19 6 1.8046 6.0724 -7.4559 20 7 1.9123 7.3255 -7.0679 21 14 1.2824 5.6780 -9.2056 22 1 -0.1970 5.5653 -9.2672 23 1 1.7346 6.7627 -10.1135 24 1 1.8947 4.3923 -9.6270 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 3.4752 2.3437 1.9647 31 1 3.6879 0.5765 1.9482 32 1 5.3588 3.7425 1.3334 33 1 6.8868 2.9520 0.8764 34 1 5.8381 2.0663 -1.1732 35 1 5.6614 3.8375 -1.1118 36 1 3.3026 1.8155 -2.5524 37 1 1.8304 3.2033 -4.3330 38 1 3.5357 3.2159 -4.8431 39 1 1.7210 8.0442 -7.6905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353195240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:58 Heat of formation + Delta-G solvation = -137.482267 kcal Electronic energy + Delta-G solvation = -21087.212050 eV Core-core repulsion = 17735.016746 eV Total energy + Delta-G solvation = -3352.195304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.38673 -38.69380 -37.73815 -34.91558 -32.42520 -32.01451 -31.64882 -29.86332 -28.79302 -25.52198 -24.63729 -23.76337 -22.89219 -20.74476 -20.31264 -17.96407 -17.38410 -16.80827 -16.66607 -16.28093 -15.59703 -15.29939 -15.01238 -14.79764 -14.68192 -14.28921 -13.91997 -13.45442 -13.42326 -13.12688 -12.71244 -12.55839 -12.49485 -12.13815 -11.80701 -11.60249 -11.48617 -11.26579 -11.06028 -11.01912 -10.80287 -10.70636 -10.29914 -9.82724 -9.70597 -9.26653 -9.06536 -8.89459 -8.22807 -6.49058 -6.21116 -3.91514 3.00221 3.10119 3.13556 3.22657 3.27852 3.31716 3.65262 3.72935 4.20992 4.32730 4.52411 4.67570 4.74440 4.78372 4.91892 4.94998 5.01847 5.07007 5.14067 5.21069 5.33203 5.34779 5.42113 5.46854 5.61798 5.64544 5.67179 5.84450 5.88755 5.90036 6.01392 6.15227 6.61173 6.70361 7.00488 7.60030 7.70888 8.35745 8.62343 9.24210 10.86349 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.003540 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.343926 B = 7908.278627 C = 8833.791358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.052 3.948 5 H 0.073 0.927 6 C 0.045 3.955 7 O -0.378 6.378 8 C 0.060 3.940 9 C -0.165 4.165 10 C 0.151 3.849 11 H 0.097 0.903 12 N -0.728 5.728 13 C 0.535 3.465 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 -16.476 15.846 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.288 6.288 4 C -0.007 4.007 5 H 0.091 0.909 6 C -0.033 4.033 7 O -0.297 6.297 8 C -0.017 4.017 9 C -0.204 4.204 10 C 0.045 3.955 11 H 0.115 0.885 12 N -0.380 5.380 13 C 0.322 3.678 14 O -0.392 6.392 15 C -0.303 4.303 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.683 -14.442 16.758 22.427 hybrid contribution -0.644 -1.998 -2.142 2.999 sum 3.039 -16.440 14.616 22.207 Atomic orbital electron populations 1.21745 0.93457 1.02238 1.03523 1.22567 0.95926 0.83647 0.99999 1.88035 1.19381 1.26452 1.94926 1.23041 0.82394 0.98525 0.96790 0.90876 1.23009 0.81782 1.02977 0.95515 1.87945 1.20883 1.41583 1.79253 1.22664 1.00529 0.86892 0.91610 1.22674 0.95322 1.04507 0.97934 1.20968 0.94064 0.97750 0.82727 0.88481 1.45901 1.71668 1.09100 1.11378 1.20294 0.75898 0.83551 0.88080 1.90692 1.49882 1.28101 1.70498 1.23524 1.03965 1.08435 0.94397 1.85385 1.88947 0.98242 1.10708 1.22872 1.53385 0.95475 0.96669 0.90960 1.24983 0.94943 0.94422 0.99181 1.70013 1.45827 0.98622 1.35842 0.86175 0.78874 0.78170 0.82317 1.20263 1.20745 1.19705 0.91492 0.91109 0.91801 0.93227 0.93435 0.91805 0.88530 0.92388 0.88107 0.90651 0.89061 0.76980 0.89241 0.89307 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.15 0.38 -0.81 16 2 C 0.06 0.45 6.47 37.15 0.24 0.69 16 3 O -0.37 -4.11 9.92 -35.23 -0.35 -4.46 16 4 C 0.05 0.52 2.31 -26.59 -0.06 0.46 16 5 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 6 C 0.05 0.41 6.47 37.21 0.24 0.65 16 7 O -0.38 -3.89 10.77 -35.23 -0.38 -4.27 16 8 C 0.06 0.57 6.84 37.20 0.25 0.82 16 9 C -0.17 -1.83 5.72 -26.60 -0.15 -1.98 16 10 C 0.15 1.89 2.22 -67.75 -0.15 1.73 16 11 H 0.10 1.45 7.58 -51.93 -0.39 1.06 16 12 N -0.73 -10.16 5.01 -53.63 -0.27 -10.43 16 13 C 0.54 10.13 7.82 -10.99 -0.09 10.05 16 14 O -0.52 -11.76 15.52 5.56 0.09 -11.68 16 15 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 21 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.05 0.32 7.96 -51.93 -0.41 -0.09 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.73 7.96 -51.93 -0.41 0.31 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 36 H 0.40 4.51 8.61 -40.82 -0.35 4.16 16 37 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 340.68 15.07 5.13 5.13 Total: -1.00 -34.43 340.68 -7.36 -41.79 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.17 Total: 1.15 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 1.09 Total: -4.31 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.47 Total: -35.96 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.64 Total: -20.41 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.43 -7.36 -41.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353195240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.695 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds