Wall clock time and date at job start Tue Mar 31 2020 04:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.55972 * 2 1 4 4 C 1.53181 * 109.64401 * 120.26682 * 2 1 3 5 5 N 1.46391 * 109.50861 * 61.63461 * 4 2 1 6 6 C 1.34774 * 119.70042 * 244.27256 * 5 4 2 7 7 O 1.21280 * 119.99821 * 180.02562 * 6 5 4 8 8 C 1.50701 * 119.99833 * 0.02562 * 6 5 4 9 9 C 1.53001 * 109.46976 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47307 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99731 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00539 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99377 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00315 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47046 * 90.00128 * 14 12 10 16 16 H 1.48497 * 109.46948 * 209.99740 * 14 12 10 17 17 H 1.48500 * 109.47223 * 330.00167 * 14 12 10 18 18 C 1.46383 * 120.60002 * 64.29714 * 5 4 2 19 19 C 1.53184 * 109.51301 * 295.70402 * 18 5 4 20 20 H 1.09000 * 109.55568 * 298.41811 * 19 18 5 21 21 C 1.52996 * 109.64985 * 178.15104 * 19 18 5 22 22 S 1.81665 * 108.94760 * 58.25616 * 19 18 5 23 23 O 1.42103 * 108.64998 * 190.09249 * 22 19 18 24 24 O 1.42096 * 108.72599 * 58.81828 * 22 19 18 25 25 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47184 * 300.00093 * 1 2 3 27 27 H 1.09007 * 109.46588 * 60.00095 * 1 2 3 28 28 H 1.08996 * 109.46771 * 181.64724 * 4 2 1 29 29 H 1.09002 * 109.46460 * 301.62456 * 4 2 1 30 30 H 1.09004 * 109.47150 * 299.99655 * 8 6 5 31 31 H 1.08995 * 109.47360 * 59.99943 * 8 6 5 32 32 H 1.09004 * 109.46920 * 299.99821 * 9 8 6 33 33 H 1.09000 * 109.47362 * 59.99444 * 9 8 6 34 34 H 0.96995 * 119.99468 * 179.97438 * 13 12 10 35 35 H 1.09006 * 109.46507 * 175.68759 * 18 5 4 36 36 H 1.08997 * 109.46067 * 55.71238 * 18 5 4 37 37 H 1.08998 * 109.46990 * 300.48434 * 21 19 18 38 38 H 1.09001 * 109.47009 * 60.47455 * 21 19 18 39 39 H 1.08996 * 109.47051 * 180.47883 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0450 -0.7271 1.2460 5 7 1.5919 -2.1190 1.2220 6 6 0.7482 -2.5631 2.1746 7 8 0.3698 -3.7153 2.1601 8 6 0.2751 -1.6280 3.2575 9 6 -0.6668 -2.3770 4.2024 10 6 -1.1405 -1.4419 5.2850 11 1 -0.8031 -0.4160 5.2981 12 6 -2.0045 -1.8958 6.2589 13 7 -2.4149 -3.1452 6.2432 14 14 -2.5911 -0.7368 7.6012 15 1 -3.8375 -0.0602 7.1611 16 1 -2.8586 -1.5098 8.8405 17 1 -1.5434 0.2811 7.8690 18 6 2.0474 -3.0329 0.1731 19 6 1.5327 -2.5489 -1.1861 20 1 0.4427 -2.5505 -1.1851 21 6 2.0452 -3.4760 -2.2900 22 16 2.1382 -0.8615 -1.4793 23 8 1.4743 -0.3320 -2.6187 24 8 3.5588 -0.8743 -1.4460 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 3.1346 -0.7000 1.2581 29 1 1.6596 -0.2350 2.1390 30 1 1.1333 -1.2573 3.8180 31 1 -0.2547 -0.7887 2.8070 32 1 -1.5250 -2.7474 3.6416 33 1 -0.1374 -3.2166 4.6529 34 1 -3.0225 -3.4647 6.9285 35 1 1.6636 -4.0337 0.3716 36 1 3.1370 -3.0577 0.1611 37 1 3.1351 -3.4764 -2.2872 38 1 1.6811 -4.4880 -2.1126 39 1 1.6844 -3.1242 -3.2565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360599825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:25 Heat of formation + Delta-G solvation = -139.064425 kcal Electronic energy + Delta-G solvation = -22163.143491 eV Core-core repulsion = 18810.879579 eV Total energy + Delta-G solvation = -3352.263911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.34972 -38.34790 -37.94200 -37.18272 -35.78536 -35.26455 -33.46747 -32.85630 -28.78553 -27.98489 -26.68121 -23.99590 -23.59147 -23.00572 -20.44944 -19.44032 -18.97813 -18.02685 -17.77994 -17.27615 -17.19186 -16.72162 -16.59196 -16.40323 -15.64438 -15.11349 -14.70271 -14.28633 -14.20556 -14.11027 -14.00938 -13.84193 -13.33241 -13.31124 -13.23892 -13.12232 -13.09366 -12.84458 -12.75538 -12.69760 -12.44900 -12.32630 -11.90454 -11.70261 -11.54898 -11.28285 -11.00222 -10.72267 -10.54958 -9.97824 -8.16535 -6.29800 -1.06900 1.44263 1.45924 1.56412 1.56858 1.58807 1.79347 2.44024 2.55967 2.88419 3.17502 3.18415 3.43898 3.58333 3.73766 3.83082 4.02987 4.08574 4.34511 4.38773 4.49001 4.53550 4.60921 4.63390 4.71163 4.72594 4.75743 4.81109 5.06831 5.07399 5.20719 5.36549 5.52914 5.64769 5.87051 6.13478 6.19129 6.88868 7.14475 7.40762 8.95995 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.031223 B = 0.004024 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.555636 B = 6957.095204 C = 7406.953353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.567 4.567 3 H 0.185 0.815 4 C 0.106 3.894 5 N -0.623 5.623 6 C 0.520 3.480 7 O -0.575 6.575 8 C -0.123 4.123 9 C 0.041 3.959 10 C -0.539 4.539 11 H 0.078 0.922 12 C -0.005 4.005 13 N -0.938 5.938 14 Si 0.970 3.030 15 H -0.273 1.273 16 H -0.289 1.289 17 H -0.254 1.254 18 C 0.118 3.882 19 C -0.577 4.577 20 H 0.143 0.857 21 C -0.145 4.145 22 S 2.424 3.576 23 O -0.968 6.968 24 O -0.957 6.957 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.110 0.890 31 H 0.111 0.889 32 H -0.017 1.017 33 H -0.018 1.018 34 H 0.262 0.738 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.120 7.700 -15.405 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.680 4.680 3 H 0.203 0.797 4 C -0.017 4.017 5 N -0.357 5.357 6 C 0.311 3.689 7 O -0.453 6.453 8 C -0.162 4.162 9 C 0.003 3.997 10 C -0.577 4.577 11 H 0.096 0.904 12 C -0.203 4.203 13 N -0.578 5.578 14 Si 0.794 3.206 15 H -0.199 1.199 16 H -0.216 1.216 17 H -0.178 1.178 18 C -0.005 4.005 19 C -0.688 4.688 20 H 0.161 0.839 21 C -0.203 4.203 22 S 2.609 3.391 23 O -0.965 6.965 24 O -0.954 6.954 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.138 0.862 29 H 0.149 0.851 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.001 0.999 33 H 0.000 1.000 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.337 7.305 -16.064 20.975 hybrid contribution -1.200 -0.391 1.307 1.817 sum 10.137 6.914 -14.756 19.192 Atomic orbital electron populations 1.21784 0.89641 1.03615 1.05981 1.30330 1.07512 1.14702 1.15434 0.79724 1.21867 1.02099 0.79170 0.98527 1.48186 1.47555 1.12182 1.27762 1.21440 0.76507 0.88410 0.82545 1.90669 1.57372 1.21335 1.75920 1.21767 1.01423 0.98386 0.94659 1.18710 0.93154 0.94545 0.93258 1.21704 1.27446 0.97953 1.10575 0.90370 1.26083 0.96590 0.96677 1.00928 1.70173 1.34472 1.17338 1.35826 0.85382 0.79034 0.78560 0.77638 1.19860 1.21551 1.17790 1.21404 1.00941 0.96045 0.82153 1.30334 1.12918 1.21550 1.04020 0.83906 1.21668 1.02859 1.00474 0.95315 1.08057 0.75237 0.78470 0.77357 1.93535 1.77158 1.77770 1.48065 1.93538 1.28149 1.86331 1.87365 0.92507 0.88616 0.89588 0.86232 0.85082 0.87237 0.87069 0.99855 0.99958 0.92982 0.88250 0.87108 0.89756 0.88879 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.84 71.98 0.64 -1.82 16 2 C -0.57 -7.88 3.38 30.66 0.10 -7.78 16 3 H 0.19 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.11 1.65 5.54 86.46 0.48 2.13 16 5 N -0.62 -14.52 2.13 -821.68 -1.75 -16.27 16 6 C 0.52 17.80 7.61 87.66 0.67 18.47 16 7 O -0.57 -25.63 15.28 -3.03 -0.05 -25.68 16 8 C -0.12 -4.37 3.94 29.85 0.12 -4.25 16 9 C 0.04 2.14 4.26 29.85 0.13 2.27 16 10 C -0.54 -28.99 9.11 25.60 0.23 -28.75 16 11 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 12 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 13 N -0.94 -57.89 13.29 21.45 0.28 -57.60 16 14 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 18 C 0.12 2.46 5.49 86.46 0.47 2.93 16 19 C -0.58 -10.33 2.78 30.65 0.09 -10.25 16 20 H 0.14 2.54 7.17 -2.39 -0.02 2.52 16 21 C -0.14 -2.17 9.22 71.98 0.66 -1.51 16 22 S 2.42 44.98 4.19 -56.49 -0.24 44.74 16 23 O -0.97 -23.81 17.78 -127.38 -2.26 -26.08 16 24 O -0.96 -21.60 18.02 -127.38 -2.30 -23.90 16 25 H 0.06 1.08 6.29 -2.39 -0.02 1.06 16 26 H 0.10 1.43 7.84 -2.39 -0.02 1.41 16 27 H 0.09 1.26 7.98 -2.38 -0.02 1.24 16 28 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.13 1.79 5.73 -2.39 -0.01 1.78 16 30 H 0.11 3.32 7.69 -2.38 -0.02 3.30 16 31 H 0.11 3.31 7.56 -2.39 -0.02 3.30 16 32 H -0.02 -1.01 8.10 -2.38 -0.02 -1.03 16 33 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.42 16 35 H 0.10 2.49 6.88 -2.38 -0.02 2.48 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -80.85 325.42 0.81 -80.04 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.04 Total: 8.39 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 4.05 Total: -28.40 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -1.46 Total: -73.87 kcal Atomic # 8 Polarization: -71.05 SS G_CDS: -4.61 Total: -75.66 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 44.98 SS G_CDS: -0.24 Total: 44.74 kcal Total: -80.85 0.81 -80.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360599825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.024 kcal (2) G-P(sol) polarization free energy of solvation -80.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds