Wall clock time and date at job start Tue Mar 31 2020 03:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00191 * 2 1 4 4 H 1.48493 * 109.47063 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47323 * 300.00786 * 3 2 1 6 6 H 1.48502 * 109.46765 * 60.00353 * 3 2 1 7 7 C 1.37878 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00290 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47128 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47172 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54584 * 68.37685 * 11 10 9 13 13 O 1.42105 * 110.54495 * 291.62123 * 11 10 9 14 14 N 1.65602 * 104.45072 * 179.97438 * 11 10 9 15 15 C 1.46498 * 119.99902 * 65.00175 * 14 11 10 16 16 H 1.09004 * 110.91230 * 338.58185 * 15 14 11 17 17 C 1.55303 * 110.85326 * 102.16775 * 15 14 11 18 18 C 1.54947 * 100.94586 * 152.32328 * 17 15 14 19 19 O 1.43652 * 105.13502 * 323.55517 * 18 17 15 20 20 C 1.43237 * 109.96969 * 24.42723 * 19 18 17 21 21 H 1.08996 * 109.83189 * 238.67845 * 20 19 18 22 22 C 1.53006 * 109.82961 * 117.79887 * 20 19 18 23 23 C 1.53001 * 117.49866 * 130.07515 * 22 20 19 24 24 C 1.53000 * 117.49497 * 61.45107 * 22 20 19 25 25 H 0.96995 * 120.00352 * 359.97438 * 1 2 3 26 26 H 1.08990 * 109.47226 * 60.00021 * 9 7 2 27 27 H 1.08997 * 109.46686 * 299.99786 * 9 7 2 28 28 H 1.09005 * 109.47409 * 59.99447 * 10 9 7 29 29 H 1.09008 * 109.47304 * 299.99933 * 10 9 7 30 30 H 0.96996 * 120.00596 * 245.00115 * 14 11 10 31 31 H 1.09010 * 111.12129 * 34.40384 * 17 15 14 32 32 H 1.08998 * 111.12390 * 270.24597 * 17 15 14 33 33 H 1.09002 * 110.30619 * 204.64442 * 18 17 15 34 34 H 1.08996 * 110.31098 * 82.47453 * 18 17 15 35 35 H 1.08996 * 115.55031 * 275.79001 * 22 20 19 36 36 H 1.08996 * 117.49555 * 359.97438 * 23 22 20 37 37 H 1.08995 * 117.49577 * 145.02406 * 23 22 20 38 38 H 1.08998 * 117.49694 * 214.97781 * 24 22 20 39 39 H 1.08999 * 117.50120 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3382 -5.2331 0.0002 12 8 0.6638 -5.4201 -1.2364 13 8 0.6647 -5.4194 1.2376 14 7 2.5204 -6.3928 -0.0006 15 6 3.4196 -6.5229 1.1487 16 1 3.4488 -5.5990 1.7264 17 6 3.0027 -7.7215 2.0439 18 6 4.3654 -8.1073 2.6724 19 8 5.3322 -7.8943 1.6315 20 6 4.8372 -6.9314 0.6937 21 1 4.7946 -7.3729 -0.3020 22 6 5.7511 -5.7043 0.6783 23 6 6.2361 -5.2017 -0.6829 24 6 7.2079 -5.9138 0.2603 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5568 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.8720 -3.6044 0.8894 29 1 2.8719 -3.6044 -0.8906 30 1 2.6175 -6.9859 -0.7619 31 1 2.6011 -8.5386 1.4443 32 1 2.2909 -7.4115 2.8090 33 1 4.3596 -9.1545 2.9747 34 1 4.5825 -7.4671 3.5273 35 1 5.5506 -4.9592 1.4482 36 1 5.9045 -5.7454 -1.5674 37 1 6.3546 -4.1255 -0.8089 38 1 7.9657 -5.3060 0.7547 39 1 7.5151 -6.9256 -0.0042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378322847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:09 Heat of formation + Delta-G solvation = -129.348810 kcal Electronic energy + Delta-G solvation = -21804.269424 eV Core-core repulsion = 18452.426813 eV Total energy + Delta-G solvation = -3351.842611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.90523 -38.17212 -37.46558 -37.03702 -35.93446 -35.88860 -33.12363 -31.48678 -29.43634 -27.59414 -24.22832 -23.61814 -23.22863 -22.61536 -21.50815 -20.31796 -19.14729 -18.43391 -18.10239 -17.03690 -17.00837 -16.83196 -16.50962 -16.21912 -15.71422 -15.31244 -14.93977 -14.66680 -14.48462 -13.94111 -13.73281 -13.65264 -13.22798 -13.15450 -13.07074 -12.95591 -12.78260 -12.54572 -12.35668 -12.31538 -12.26550 -12.11346 -11.97793 -11.74250 -11.37192 -11.17216 -11.01157 -10.64828 -10.49722 -10.31267 -8.25546 -6.38941 -0.71446 1.41490 1.41701 1.54781 1.74758 2.38198 2.59923 2.76458 3.08526 3.20101 3.23529 3.47133 3.51118 3.85170 3.90630 4.06149 4.07876 4.13968 4.17248 4.26334 4.30775 4.40479 4.54669 4.76294 4.84632 4.86993 4.95270 5.00754 5.09862 5.20006 5.27351 5.29153 5.30367 5.33619 5.69579 5.99304 6.06267 6.07858 6.75128 7.31376 8.87012 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.005033 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.218168 B = 5562.069143 C = 6605.418093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.076 0.924 9 C 0.020 3.980 10 C -0.586 4.586 11 S 2.619 3.381 12 O -0.997 6.997 13 O -0.992 6.992 14 N -1.093 6.093 15 C 0.119 3.881 16 H 0.107 0.893 17 C -0.174 4.174 18 C 0.050 3.950 19 O -0.383 6.383 20 C 0.113 3.887 21 H 0.097 0.903 22 C -0.186 4.186 23 C -0.174 4.174 24 C -0.160 4.160 25 H 0.267 0.733 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.427 0.573 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.740 -15.417 2.435 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.179 1.179 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.095 0.905 9 C -0.019 4.019 10 C -0.718 4.718 11 S 2.716 3.284 12 O -0.987 6.987 13 O -0.981 6.981 14 N -0.853 5.853 15 C 0.011 3.989 16 H 0.125 0.875 17 C -0.213 4.213 18 C -0.027 4.027 19 O -0.302 6.302 20 C 0.054 3.946 21 H 0.115 0.885 22 C -0.205 4.205 23 C -0.211 4.211 24 C -0.197 4.197 25 H 0.076 0.924 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.264 0.736 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.829 -15.511 2.573 20.292 hybrid contribution 0.185 1.241 -0.274 1.285 sum 13.014 -14.269 2.298 19.449 Atomic orbital electron populations 1.70103 1.08059 1.28207 1.51101 1.26078 0.95788 1.03762 0.94476 0.85301 0.79234 0.78223 0.77726 1.17892 1.20506 1.20469 1.21536 0.93980 0.90688 1.51159 0.90548 1.18822 0.93589 0.93055 0.96398 1.30333 1.12730 1.16334 1.12436 1.04535 0.74606 0.76436 0.72845 1.93513 1.72899 1.85774 1.46510 1.93515 1.72507 1.85346 1.46771 1.55257 1.51476 1.50791 1.27795 1.22485 0.89203 1.00772 0.86480 0.87540 1.23774 0.98936 0.98361 1.00234 1.23496 0.85674 1.02994 0.90488 1.88457 1.43120 1.60584 1.38028 1.22469 0.89995 0.88086 0.94031 0.88494 1.22731 0.97802 0.99595 1.00333 1.23078 1.03607 1.01315 0.93139 1.22846 0.91810 1.02075 1.02971 0.92445 0.97544 0.97440 0.84130 0.83725 0.73588 0.89013 0.89005 0.87634 0.91064 0.87501 0.87790 0.88346 0.88279 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.53 -28.92 9.11 25.60 0.23 -28.69 16 8 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.02 1.03 4.98 29.85 0.15 1.18 16 10 C -0.59 -21.04 5.93 71.98 0.43 -20.61 16 11 S 2.62 88.50 5.38 -56.49 -0.30 88.20 16 12 O -1.00 -40.18 18.08 -127.65 -2.31 -42.49 16 13 O -0.99 -39.37 17.82 -127.65 -2.27 -41.64 16 14 N -1.09 -24.78 5.48 -164.15 -0.90 -25.68 16 15 C 0.12 2.44 2.96 46.25 0.14 2.57 16 16 H 0.11 2.17 6.85 -2.39 -0.02 2.16 16 17 C -0.17 -3.21 6.85 32.05 0.22 -2.99 16 18 C 0.05 0.80 7.78 72.65 0.57 1.36 16 19 O -0.38 -7.57 10.96 -148.98 -1.63 -9.20 16 20 C 0.11 2.10 3.47 31.07 0.11 2.21 16 21 H 0.10 1.61 7.60 -2.39 -0.02 1.59 16 22 C -0.19 -3.49 5.38 -10.79 -0.06 -3.55 16 23 C -0.17 -3.07 10.18 30.60 0.31 -2.75 16 24 C -0.16 -2.72 10.19 30.60 0.31 -2.40 16 25 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.14 4.34 7.55 -2.39 -0.02 4.32 16 29 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 30 H 0.43 7.67 8.62 -96.75 -0.83 6.84 16 31 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.11 2.05 7.83 -2.39 -0.02 2.03 16 36 H 0.10 1.64 8.06 -2.39 -0.02 1.62 16 37 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -73.52 338.14 -2.03 -75.55 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.21 Total: 19.93 kcal Atomic # 6 Polarization: -56.23 SS G_CDS: 2.87 Total: -53.36 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -0.61 Total: -81.67 kcal Atomic # 8 Polarization: -87.12 SS G_CDS: -6.21 Total: -93.33 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 88.50 SS G_CDS: -0.30 Total: 88.20 kcal Total: -73.52 -2.03 -75.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378322847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.800 kcal (2) G-P(sol) polarization free energy of solvation -73.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds