Wall clock time and date at job start Tue Mar 31 2020 02:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99950 * 2 1 4 4 H 1.48494 * 109.47262 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46780 * 299.99791 * 3 2 1 6 6 H 1.48498 * 109.47340 * 59.99607 * 3 2 1 7 7 C 1.38811 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99784 * 165.44410 * 7 2 1 9 9 N 1.36937 * 120.00313 * 345.45262 * 7 2 1 10 10 C 1.46499 * 119.99681 * 307.65270 * 9 7 2 11 11 C 1.52999 * 117.49901 * 1.78991 * 10 9 7 12 12 C 1.52999 * 117.49836 * 293.13206 * 10 9 7 13 13 S 1.65596 * 120.00160 * 127.65395 * 9 7 2 14 14 O 1.42100 * 104.27750 * 153.92784 * 13 9 7 15 15 O 1.42102 * 104.28002 * 26.06970 * 13 9 7 16 16 C 1.81402 * 104.45062 * 270.00028 * 13 9 7 17 17 C 1.53001 * 109.47322 * 180.02562 * 16 13 9 18 18 O 1.42895 * 109.47281 * 179.97438 * 17 16 13 19 19 C 1.42895 * 114.00427 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.47612 * 180.02562 * 19 18 17 21 21 C 1.53000 * 117.49976 * 243.62251 * 20 19 18 22 22 C 1.52996 * 117.50256 * 174.99968 * 20 19 18 23 23 H 0.96997 * 120.00186 * 357.94327 * 1 2 3 24 24 H 1.09003 * 115.55017 * 147.46068 * 10 9 7 25 25 H 1.09001 * 117.50138 * 359.97438 * 11 10 9 26 26 H 1.08999 * 117.49821 * 145.02227 * 11 10 9 27 27 H 1.09009 * 117.49706 * 214.97932 * 12 10 9 28 28 H 1.08996 * 117.50170 * 359.97438 * 12 10 9 29 29 H 1.08991 * 109.46898 * 59.99744 * 16 13 9 30 30 H 1.09001 * 109.46447 * 300.00050 * 16 13 9 31 31 H 1.09004 * 109.47202 * 59.99785 * 17 16 13 32 32 H 1.08998 * 109.46882 * 299.99741 * 17 16 13 33 33 H 1.09002 * 109.46849 * 59.99839 * 19 18 17 34 34 H 1.08997 * 109.47090 * 300.00389 * 19 18 17 35 35 H 1.09005 * 115.54894 * 29.32560 * 20 19 18 36 36 H 1.08998 * 117.49885 * 0.02562 * 21 20 19 37 37 H 1.09007 * 117.50245 * 145.01838 * 21 20 19 38 38 H 1.08999 * 117.50543 * 214.97908 * 22 20 19 39 39 H 1.08998 * 117.49753 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0643 -1.2172 -0.2345 9 7 1.3586 -2.3689 0.2989 10 6 0.5681 -2.4727 1.5279 11 6 0.4755 -1.2298 2.4154 12 6 1.3216 -2.4259 2.8587 13 16 1.4641 -3.6626 -0.7294 14 8 1.2499 -4.7923 0.1055 15 8 2.7005 -3.4741 -1.4041 16 6 0.0744 -3.4450 -1.8748 17 6 0.0629 -4.5924 -2.8868 18 8 -1.0321 -4.4213 -3.7886 19 6 -1.1339 -5.4451 -4.7804 20 6 -2.3342 -5.1609 -5.6856 21 6 -3.4795 -6.1753 -5.6793 22 6 -2.5461 -6.0828 -6.8880 23 1 -0.4850 0.8395 0.0301 24 1 -0.3101 -3.1157 1.4692 25 1 1.0031 -0.3350 2.0850 26 1 -0.4635 -1.0554 2.9408 27 1 0.9389 -3.0379 3.6756 28 1 2.4056 -2.3183 2.8198 29 1 0.1826 -2.4968 -2.4012 30 1 -0.8610 -3.4452 -1.3152 31 1 -0.0455 -5.5405 -2.3599 32 1 0.9983 -4.5926 -3.4464 33 1 -1.2665 -6.4110 -4.2930 34 1 -0.2235 -5.4623 -5.3795 35 1 -2.5937 -4.1090 -5.8058 36 1 -3.3782 -7.0449 -5.0300 37 1 -4.4930 -5.7909 -5.7954 38 1 -2.9454 -5.6376 -7.7994 39 1 -1.8307 -6.8920 -7.0341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424208669.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:25 Heat of formation + Delta-G solvation = -59.969302 kcal Electronic energy + Delta-G solvation = -21502.019748 eV Core-core repulsion = 18153.185658 eV Total energy + Delta-G solvation = -3348.834089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.38875 -37.27570 -36.57255 -35.73524 -34.57552 -33.02744 -31.13069 -31.04443 -26.79387 -25.03285 -22.75875 -22.52245 -21.34304 -20.79217 -20.69201 -18.38037 -17.25738 -16.79527 -16.42953 -16.00073 -15.41991 -15.31250 -14.81941 -14.60988 -14.23531 -13.84080 -13.64256 -13.24405 -13.11944 -12.35218 -11.89573 -11.74042 -11.52755 -11.42836 -11.32223 -11.21474 -10.99892 -10.83959 -10.78320 -10.71841 -10.59197 -10.42487 -10.39159 -10.23840 -9.82792 -9.71686 -9.37571 -9.21270 -8.79434 -7.58588 -6.61966 -4.35952 1.54724 3.05014 3.14010 3.19856 3.50241 3.81901 3.91762 4.22323 4.63127 4.68064 4.74757 4.87532 5.00594 5.21256 5.21936 5.25229 5.31650 5.43612 5.51970 5.55967 5.59734 5.64337 5.70712 5.91553 5.92248 6.05272 6.08209 6.10998 6.28612 6.42489 6.55940 6.61793 6.93575 7.19635 7.27921 7.39596 7.54587 8.27440 8.63923 9.17646 10.34758 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.004366 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.256351 B = 6411.329383 C = 6957.107124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.260 4.260 8 H 0.101 0.899 9 N -0.782 5.782 10 C 0.121 3.879 11 C -0.150 4.150 12 C -0.209 4.209 13 S 2.499 3.501 14 O -1.001 7.001 15 O -0.977 6.977 16 C -0.644 4.644 17 C 0.081 3.919 18 O -0.378 6.378 19 C 0.086 3.914 20 C -0.151 4.151 21 C -0.178 4.178 22 C -0.176 4.176 23 H 0.275 0.725 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 -4.727 -5.149 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.167 4.167 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.407 4.407 8 H 0.119 0.881 9 N -0.604 5.604 10 C 0.012 3.988 11 C -0.189 4.189 12 C -0.249 4.249 13 S 2.600 3.400 14 O -0.991 6.991 15 O -0.967 6.967 16 C -0.764 4.764 17 C 0.004 3.996 18 O -0.297 6.297 19 C 0.009 3.991 20 C -0.169 4.169 21 C -0.215 4.215 22 C -0.213 4.213 23 H 0.086 0.914 24 H 0.121 0.879 25 H 0.127 0.873 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.145 0.855 30 H 0.136 0.864 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.346 -5.432 -5.301 8.746 hybrid contribution -0.368 0.997 -0.459 1.157 sum -4.714 -4.435 -5.760 8.665 Atomic orbital electron populations 1.70095 1.06345 1.28703 1.39648 1.25953 0.95413 1.00957 0.94378 0.86068 0.80770 0.80992 0.78376 1.18390 1.20148 1.19973 1.19606 0.93456 0.82904 1.44711 0.88120 1.52621 1.56597 1.28317 1.22873 1.20843 0.95146 1.01128 0.81636 1.23109 0.99985 0.94022 1.01771 1.23378 0.99463 1.03370 0.98673 1.12182 0.77262 0.75962 0.74564 1.93364 1.87360 1.53738 1.64631 1.93381 1.40810 1.86051 1.76455 1.31271 1.25312 1.05514 1.14277 1.22138 0.89613 0.97189 0.90708 1.87987 1.50043 1.48048 1.43609 1.22021 0.96502 0.90990 0.89613 1.22153 0.97412 0.97936 0.99411 1.23064 0.95680 1.01455 1.01320 1.22963 1.03205 1.02328 0.92760 0.91429 0.87901 0.87306 0.90652 0.90115 0.89142 0.85497 0.86403 0.93010 0.92815 0.93283 0.92926 0.86778 0.88682 0.88649 0.88474 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.10 11.64 55.49 0.65 -18.45 16 2 C 0.05 1.11 3.14 -17.43 -0.05 1.05 16 3 Si 0.91 18.12 29.43 -169.99 -5.00 13.11 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.26 -6.36 8.21 -15.06 -0.12 -6.48 16 8 H 0.10 2.52 7.69 -52.49 -0.40 2.12 16 9 N -0.78 -18.63 2.94 -53.43 -0.16 -18.79 16 10 C 0.12 2.65 5.40 -67.93 -0.37 2.29 16 11 C -0.15 -3.04 8.37 -26.70 -0.22 -3.26 16 12 C -0.21 -4.08 10.38 -26.70 -0.28 -4.35 16 13 S 2.50 58.38 5.39 -107.50 -0.58 57.80 16 14 O -1.00 -24.70 17.26 -57.54 -0.99 -25.69 16 15 O -0.98 -25.21 17.11 -57.54 -0.98 -26.19 16 16 C -0.64 -13.46 6.55 37.16 0.24 -13.21 16 17 C 0.08 1.52 5.95 37.16 0.22 1.74 16 18 O -0.38 -6.86 10.34 -35.23 -0.36 -7.22 16 19 C 0.09 1.20 6.22 37.15 0.23 1.43 16 20 C -0.15 -1.83 6.06 -90.62 -0.55 -2.38 16 21 C -0.18 -1.81 10.18 -26.73 -0.27 -2.08 16 22 C -0.18 -1.65 10.25 -26.73 -0.27 -1.92 16 23 H 0.28 6.07 8.31 -40.82 -0.34 5.73 16 24 H 0.10 2.14 8.13 -51.93 -0.42 1.72 16 25 H 0.11 2.36 5.12 -51.93 -0.27 2.10 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.08 1.38 8.14 -51.92 -0.42 0.95 16 28 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 29 H 0.13 2.76 8.14 -51.93 -0.42 2.34 16 30 H 0.12 2.41 8.14 -51.92 -0.42 1.99 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.63 7.88 -51.93 -0.41 0.22 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -28.90 338.98 -9.90 -38.80 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.13 Total: 8.72 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -1.45 Total: -27.19 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.49 Total: -37.24 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -2.34 Total: -59.11 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.00 Total: 13.11 kcal Atomic # 16 Polarization: 58.38 SS G_CDS: -0.58 Total: 57.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.90 -9.90 -38.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424208669.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.169 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds