Wall clock time and date at job start Tue Mar 31 2020 04:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46964 * 2 1 4 4 C 1.42900 * 113.99967 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.91065 * 18.74792 * 4 3 2 6 6 C 1.53779 * 113.61316 * 247.49845 * 4 3 2 7 7 C 1.53785 * 87.08093 * 220.01549 * 6 4 3 8 8 H 1.09002 * 113.61570 * 270.88522 * 7 6 4 9 9 N 1.46500 * 113.68813 * 139.99098 * 7 6 4 10 10 C 1.34781 * 119.99985 * 105.94035 * 9 7 6 11 11 O 1.21280 * 119.99799 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99932 * 179.97438 * 10 9 7 13 13 S 1.81003 * 109.46939 * 179.97438 * 12 10 9 14 14 C 1.76196 * 99.99859 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00276 * 0.02562 * 14 13 12 16 16 C 1.38804 * 119.99756 * 179.97438 * 14 13 12 17 17 N 1.31634 * 119.99723 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00017 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47237 * 89.99774 * 18 16 14 20 20 H 1.48501 * 109.46641 * 209.99468 * 18 16 14 21 21 H 1.48501 * 109.46897 * 329.99341 * 18 16 14 22 22 C 1.53781 * 87.08241 * 25.43228 * 7 6 4 23 23 H 1.09005 * 113.61302 * 89.11252 * 22 7 6 24 24 O 1.42897 * 113.61928 * 220.01767 * 22 7 6 25 25 C 1.42894 * 114.00131 * 209.99686 * 24 22 7 26 26 H 1.09005 * 109.47203 * 59.99809 * 1 2 3 27 27 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46874 * 300.00149 * 1 2 3 29 29 H 1.09003 * 109.46735 * 240.00473 * 2 1 3 30 30 H 1.08988 * 109.47053 * 120.00014 * 2 1 3 31 31 H 1.09003 * 113.61775 * 105.47426 * 6 4 3 32 32 H 1.08996 * 113.61960 * 334.56152 * 6 4 3 33 33 H 0.96998 * 120.00149 * 285.93056 * 9 7 6 34 34 H 1.08997 * 109.46730 * 299.99650 * 12 10 9 35 35 H 1.08994 * 109.46768 * 60.00057 * 12 10 9 36 36 H 0.96996 * 119.99460 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.46948 * 60.00454 * 25 24 22 38 38 H 1.09006 * 109.46705 * 179.97438 * 25 24 22 39 39 H 1.08991 * 109.47462 * 299.99928 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9288 0.5459 -0.3236 6 6 4.0029 2.0461 1.3010 7 6 4.9900 2.8313 0.4212 8 1 5.9141 2.2919 0.2134 9 7 5.2226 4.2036 0.8781 10 6 6.3841 4.5252 1.4817 11 8 7.2363 3.6783 1.6470 12 6 6.6236 5.9370 1.9513 13 16 8.2606 6.0491 2.7154 14 6 8.2753 7.7544 3.1583 15 1 7.4221 8.3778 2.9349 16 6 9.3831 8.2965 3.7953 17 7 9.3939 9.5704 4.1266 18 14 10.8584 7.2181 4.1823 19 1 11.8084 7.2509 3.0415 20 1 11.5343 7.7241 5.4040 21 1 10.4053 5.8223 4.4093 22 6 3.9484 2.7253 -0.7052 23 1 3.2299 3.5450 -0.7140 24 8 4.5189 2.4720 -1.9906 25 6 3.7662 3.0138 -3.0776 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 4.4823 1.3046 1.9401 32 1 3.2994 2.6802 1.8407 33 1 4.5409 4.8809 0.7461 34 1 6.5721 6.6164 1.1005 35 1 5.8625 6.2110 2.6817 36 1 10.1681 9.9492 4.5714 37 1 3.6935 4.0957 -2.9656 38 1 4.2653 2.7790 -4.0178 39 1 2.7661 2.5806 -3.0787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487092021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:35 Heat of formation + Delta-G solvation = -134.886201 kcal Electronic energy + Delta-G solvation = -20521.512442 eV Core-core repulsion = 17169.429712 eV Total energy + Delta-G solvation = -3352.082730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 12.95 seconds Orbital eigenvalues (eV) -41.49683 -40.04142 -38.27211 -36.91490 -34.67344 -34.29787 -31.86351 -30.67244 -28.00230 -27.86280 -25.57794 -25.23276 -23.65690 -21.87177 -21.26910 -19.86748 -18.64628 -18.14443 -17.54379 -17.12757 -16.95162 -16.61342 -16.39176 -16.27753 -15.84179 -15.64411 -14.98306 -14.77512 -14.50859 -14.19929 -14.09427 -13.63648 -13.42686 -13.34281 -13.03536 -12.95486 -12.75952 -12.65674 -12.40384 -12.28088 -12.10965 -11.86076 -11.79591 -11.16887 -11.15088 -10.87771 -10.53530 -10.45102 -10.02682 -8.99421 -8.51352 -6.22047 0.98007 1.31901 1.46462 1.51271 1.54966 2.04365 2.25390 2.61067 2.76465 2.86884 2.97285 3.32755 3.41121 3.69932 3.76017 3.86328 4.17921 4.20183 4.23721 4.31599 4.41352 4.46815 4.50982 4.52835 4.55191 4.72509 4.82295 4.86967 4.89676 4.99794 5.04591 5.28350 5.38496 5.71088 6.06286 6.11855 6.28576 6.41743 6.93864 7.15149 8.61015 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032032 B = 0.002905 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.922123 B = 9637.260493 C = 9892.394627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.385 6.385 4 C 0.062 3.938 5 H 0.104 0.896 6 C -0.159 4.159 7 C 0.124 3.876 8 H 0.103 0.897 9 N -0.700 5.700 10 C 0.539 3.461 11 O -0.559 6.559 12 C -0.111 4.111 13 S -0.175 6.175 14 C -0.528 4.528 15 H 0.063 0.937 16 C 0.044 3.956 17 N -0.917 5.917 18 Si 0.915 3.085 19 H -0.263 1.263 20 H -0.259 1.259 21 H -0.236 1.236 22 C 0.067 3.933 23 H 0.114 0.886 24 O -0.394 6.394 25 C 0.024 3.976 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.417 0.583 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.277 0.723 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.209 -18.566 -12.122 29.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.304 6.304 4 C 0.002 3.998 5 H 0.122 0.878 6 C -0.198 4.198 7 C 0.018 3.982 8 H 0.121 0.879 9 N -0.353 5.353 10 C 0.325 3.675 11 O -0.437 6.437 12 C -0.262 4.262 13 S 0.051 5.949 14 C -0.676 4.676 15 H 0.081 0.919 16 C -0.161 4.161 17 N -0.555 5.555 18 Si 0.737 3.263 19 H -0.187 1.187 20 H -0.183 1.183 21 H -0.160 1.160 22 C 0.008 3.992 23 H 0.132 0.868 24 O -0.313 6.313 25 C -0.072 4.072 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.255 0.745 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.688 -19.751 -11.812 29.025 hybrid contribution -0.552 1.499 0.054 1.598 sum -18.240 -18.251 -11.757 28.355 Atomic orbital electron populations 1.21767 0.92788 1.03368 1.02750 1.22738 0.96368 0.82864 1.00884 1.87896 1.19861 1.28106 1.94585 1.23919 0.81716 0.98688 0.95439 0.87820 1.23686 0.98243 1.00482 0.97351 1.22435 0.98469 0.83097 0.94187 0.87854 1.45594 1.17815 1.11862 1.60031 1.20001 0.81768 0.88979 0.76768 1.90689 1.45312 1.51325 1.56388 1.23272 1.00941 0.97074 1.04920 1.84724 1.20917 1.12720 1.76511 1.22461 1.06501 0.93847 1.44774 0.91889 1.25575 1.00745 0.95959 0.93808 1.70018 1.31948 1.13204 1.40329 0.85861 0.79929 0.81189 0.79361 1.18747 1.18342 1.16015 1.24506 0.94147 0.98032 0.82488 0.86816 1.87942 1.50852 1.77821 1.14649 1.23000 0.96444 0.98252 0.89469 0.92146 0.89335 0.92269 0.92541 0.92620 0.89625 0.87852 0.74499 0.86777 0.86551 0.91372 0.93088 0.88553 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.05 0.60 6.50 71.98 0.47 1.07 16 3 O -0.39 -6.59 10.35 -148.98 -1.54 -8.14 16 4 C 0.06 1.05 4.14 31.12 0.13 1.17 16 5 H 0.10 1.66 7.87 -2.39 -0.02 1.64 16 6 C -0.16 -2.95 7.71 31.12 0.24 -2.71 16 7 C 0.12 2.79 4.05 45.52 0.18 2.97 16 8 H 0.10 2.87 7.50 -2.39 -0.02 2.85 16 9 N -0.70 -16.86 5.36 -440.02 -2.36 -19.22 16 10 C 0.54 18.55 7.85 87.66 0.69 19.24 16 11 O -0.56 -24.00 15.48 -3.03 -0.05 -24.05 16 12 C -0.11 -4.16 6.16 71.24 0.44 -3.72 16 13 S -0.18 -8.87 18.55 -56.49 -1.05 -9.92 16 14 C -0.53 -30.77 10.04 67.96 0.68 -30.09 16 15 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 16 C 0.04 2.62 5.50 84.86 0.47 3.09 16 17 N -0.92 -55.96 13.97 21.65 0.30 -55.66 16 18 Si 0.91 45.17 27.74 68.60 1.90 47.08 16 19 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 21 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 22 C 0.07 1.23 3.89 31.12 0.12 1.35 16 23 H 0.11 1.74 7.84 -2.38 -0.02 1.72 16 24 O -0.39 -8.15 10.71 -148.98 -1.60 -9.75 16 25 C 0.02 0.34 10.85 113.37 1.23 1.57 16 26 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.42 7.25 8.71 -92.71 -0.81 6.44 16 34 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 35 H 0.12 3.95 8.14 -2.40 -0.02 3.93 16 36 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -73.91 346.04 1.19 -72.72 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.19 Total: 13.72 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 5.39 Total: -6.79 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -2.06 Total: -74.88 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -3.19 Total: -41.93 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.05 Total: -9.92 kcal Total: -73.91 1.19 -72.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487092021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.164 kcal (2) G-P(sol) polarization free energy of solvation -73.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.95 seconds