Wall clock time and date at job start Tue Mar 31 2020 04:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47150 * 2 1 4 4 C 1.50700 * 109.47384 * 240.00260 * 2 1 3 5 5 H 1.08000 * 119.99187 * 275.00193 * 4 2 1 6 6 C 1.37872 * 120.00281 * 94.99971 * 4 2 1 7 7 N 1.31513 * 120.00323 * 184.91768 * 6 4 2 8 8 Si 1.86805 * 119.99831 * 4.92132 * 6 4 2 9 9 H 1.48494 * 109.47343 * 84.83470 * 8 6 4 10 10 H 1.48502 * 109.46732 * 204.83107 * 8 6 4 11 11 H 1.48502 * 109.47107 * 324.83078 * 8 6 4 12 12 N 1.46495 * 109.47295 * 119.99733 * 2 1 3 13 13 C 1.46509 * 119.99876 * 60.00089 * 12 2 1 14 14 C 1.34784 * 120.00388 * 240.00238 * 12 2 1 15 15 O 1.21280 * 119.99483 * 0.02562 * 14 12 2 16 16 C 1.50702 * 119.99867 * 179.97438 * 14 12 2 17 17 H 1.08994 * 109.38599 * 60.21495 * 16 14 12 18 18 C 1.52589 * 109.37953 * 180.02562 * 16 14 12 19 19 C 1.52594 * 110.64065 * 190.03942 * 18 16 14 20 20 C 1.53038 * 109.98238 * 290.01442 * 19 18 16 21 21 S 1.81667 * 109.00050 * 63.64721 * 20 19 18 22 22 O 1.42097 * 108.66165 * 60.03050 * 21 20 19 23 23 O 1.42100 * 108.66259 * 191.27297 * 21 20 19 24 24 C 1.53336 * 109.25710 * 300.54111 * 16 14 12 25 25 H 1.09003 * 109.46734 * 174.97747 * 1 2 3 26 26 H 1.09004 * 109.46761 * 294.97846 * 1 2 3 27 27 H 1.08998 * 109.47008 * 54.97997 * 1 2 3 28 28 H 0.96994 * 120.00427 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46963 * 270.00012 * 13 12 2 30 30 H 1.08998 * 109.46526 * 30.00124 * 13 12 2 31 31 H 1.09002 * 109.46669 * 150.00359 * 13 12 2 32 32 H 1.08997 * 109.24372 * 69.74240 * 18 16 14 33 33 H 1.08996 * 109.24177 * 310.33403 * 18 16 14 34 34 H 1.09001 * 109.38365 * 169.85577 * 19 18 16 35 35 H 1.08996 * 109.29727 * 50.11641 * 19 18 16 36 36 H 1.08996 * 109.55229 * 303.78844 * 20 19 18 37 37 H 1.09001 * 109.62375 * 183.55104 * 20 19 18 38 38 H 1.08990 * 109.72426 * 56.43418 * 24 16 14 39 39 H 1.09007 * 109.50822 * 296.05714 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1355 -1.7854 -1.2290 6 6 2.3604 0.0121 -2.3580 7 7 2.7061 -0.6130 -3.4622 8 14 2.3138 1.8792 -2.3173 9 1 3.5993 2.3949 -1.7821 10 1 2.1060 2.3992 -3.6927 11 1 1.1988 2.3276 -1.4449 12 7 2.0184 -0.6905 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0355 2.0834 15 8 3.0858 1.1258 1.8916 16 6 3.2951 -0.7458 3.3141 17 1 3.9033 -1.5998 3.0163 18 6 4.1420 0.2152 4.1434 19 6 4.8657 -0.5320 5.2599 20 6 3.8601 -0.9959 6.3161 21 16 2.7143 -2.1855 5.5596 22 8 3.4619 -3.2937 5.0779 23 8 1.6357 -2.4115 6.4567 24 6 2.0986 -1.2367 4.1379 25 1 -0.3633 -1.0238 -0.0900 26 1 -0.3633 0.4340 0.9316 27 1 -0.3633 0.5897 -0.8416 28 1 2.9364 -0.1048 -4.2555 29 1 0.7376 -2.1444 1.9994 30 1 1.5296 -2.5968 0.4708 31 1 2.4630 -2.5818 1.9864 32 1 3.4967 0.9770 4.5806 33 1 4.8770 0.6953 3.4974 34 1 5.5974 0.1300 5.7230 35 1 5.3763 -1.3990 4.8410 36 1 3.3011 -0.1378 6.6893 37 1 4.3894 -1.4731 7.1408 38 1 1.4644 -1.8738 3.5217 39 1 1.5242 -0.3805 4.4916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590443993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:18 Heat of formation + Delta-G solvation = -105.458962 kcal Electronic energy + Delta-G solvation = -22402.521545 eV Core-core repulsion = 19051.714876 eV Total energy + Delta-G solvation = -3350.806669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -39.90020 -37.34419 -36.55028 -36.19671 -35.50065 -33.14731 -32.03543 -30.05213 -27.90453 -26.46363 -25.35636 -24.48716 -22.12558 -20.41710 -19.06467 -18.56186 -17.39713 -16.90690 -16.68477 -16.21315 -15.89753 -15.38248 -15.36299 -14.53755 -14.29556 -13.95219 -13.78921 -13.22776 -13.08081 -12.65176 -12.50148 -12.36454 -12.30453 -12.18823 -11.96697 -11.80462 -11.77545 -11.54046 -11.26403 -11.12015 -11.09772 -10.95959 -10.78356 -10.54477 -10.43575 -9.84182 -9.36704 -9.06731 -8.66562 -7.79741 -6.22532 -4.25464 -0.18862 2.42490 3.06740 3.26208 3.33664 3.39946 3.44675 3.63305 3.76170 4.30275 4.32496 4.34503 4.41871 4.55524 4.68601 4.86812 5.04852 5.15235 5.22571 5.33399 5.37408 5.52426 5.57869 5.70775 5.76987 5.93686 6.10621 6.19760 6.28166 6.32068 6.50864 6.84503 6.98961 7.36939 7.55497 8.02583 8.41091 8.75893 8.80602 9.39410 10.89203 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028324 B = 0.004840 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.312801 B = 5784.087095 C = 6131.627919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.221 3.779 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.875 3.125 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.584 5.584 13 C 0.070 3.930 14 C 0.516 3.484 15 O -0.551 6.551 16 C -0.096 4.096 17 H 0.115 0.885 18 C -0.123 4.123 19 C -0.109 4.109 20 C -0.604 4.604 21 S 2.417 3.583 22 O -0.933 6.933 23 O -0.945 6.945 24 C -0.611 4.611 25 H 0.050 0.950 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.267 0.733 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.025 -0.893 18.240 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.121 3.879 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.702 3.298 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.314 5.314 13 C -0.073 4.073 14 C 0.302 3.698 15 O -0.430 6.430 16 C -0.119 4.119 17 H 0.133 0.867 18 C -0.160 4.160 19 C -0.147 4.147 20 C -0.733 4.733 21 S 2.599 3.401 22 O -0.931 6.931 23 O -0.942 6.942 24 C -0.740 4.740 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.168 0.832 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.988 -1.144 18.186 18.249 hybrid contribution 0.061 1.607 -0.346 1.645 sum 1.048 0.463 17.839 17.876 Atomic orbital electron populations 1.22220 0.98228 1.00975 0.99139 1.19359 0.90863 0.94968 0.82746 0.91670 1.21108 1.44922 0.95724 0.94807 0.90270 1.24954 0.93698 0.98508 0.95203 1.69881 1.44916 1.36131 1.01693 0.86890 0.79833 0.86056 0.77016 1.19634 1.21342 1.18895 1.48316 1.48701 1.11540 1.22838 1.21877 0.98881 0.83450 1.03113 1.20022 0.79261 0.86921 0.83639 1.90647 1.58460 1.16996 1.76916 1.21104 0.94822 1.00900 0.95045 0.86725 1.21544 1.00067 0.97770 0.96641 1.21316 0.97283 1.02214 0.93923 1.30241 1.14922 1.17584 1.10559 1.08084 0.76796 0.77596 0.77588 1.93597 1.71945 1.46974 1.80545 1.93591 1.53321 1.84611 1.62685 1.30629 1.08746 1.16063 1.18565 0.93089 0.95536 0.92545 0.92306 0.93445 0.89370 0.91875 0.90185 0.88392 0.89203 0.89578 0.84868 0.84925 0.83186 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.10 37.16 0.34 -2.64 16 2 C 0.22 5.12 2.30 -69.08 -0.16 4.96 16 3 H 0.07 1.66 4.05 -51.93 -0.21 1.45 16 4 C -0.53 -14.06 8.72 -34.44 -0.30 -14.36 16 5 H 0.08 2.23 6.82 -52.49 -0.36 1.87 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 8 Si 0.88 21.70 26.99 -169.99 -4.59 17.11 16 9 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.26 -6.32 6.82 56.52 0.39 -5.93 16 12 N -0.58 -11.37 2.75 -175.25 -0.48 -11.85 16 13 C 0.07 1.09 7.94 59.85 0.48 1.56 16 14 C 0.52 9.50 7.07 -10.98 -0.08 9.42 16 15 O -0.55 -12.13 15.12 5.56 0.08 -12.04 16 16 C -0.10 -1.22 1.57 -91.81 -0.14 -1.36 16 17 H 0.11 1.33 7.28 -51.93 -0.38 0.95 16 18 C -0.12 -1.29 4.38 -27.15 -0.12 -1.41 16 19 C -0.11 -0.83 5.73 -26.92 -0.15 -0.99 16 20 C -0.60 -4.05 6.35 37.18 0.24 -3.81 16 21 S 2.42 23.30 5.30 -107.50 -0.57 22.73 16 22 O -0.93 -11.84 17.94 -57.82 -1.04 -12.88 16 23 O -0.95 -12.04 18.10 -57.82 -1.05 -13.09 16 24 C -0.61 -6.19 5.27 37.33 0.20 -5.99 16 25 H 0.05 0.96 7.84 -51.93 -0.41 0.56 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.05 0.60 6.87 -51.93 -0.36 0.25 16 30 H 0.09 1.50 6.56 -51.93 -0.34 1.16 16 31 H 0.06 0.82 6.03 -51.93 -0.31 0.51 16 32 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.10 1.17 7.73 -51.93 -0.40 0.77 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.65 8.01 -51.93 -0.42 0.23 16 36 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.15 1.50 4.41 -51.93 -0.23 1.27 16 39 H 0.14 1.17 8.14 -51.92 -0.42 0.75 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -36.11 315.92 -7.43 -43.54 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.52 Total: -0.35 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 0.20 Total: -12.46 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.29 Total: -37.31 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -2.00 Total: -38.01 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.59 Total: 17.11 kcal Atomic # 16 Polarization: 23.30 SS G_CDS: -0.57 Total: 22.73 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.11 -7.43 -43.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590443993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.920 kcal (2) G-P(sol) polarization free energy of solvation -36.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds