Wall clock time and date at job start Tue Mar 31 2020 02:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86797 * 119.99853 * 2 1 4 4 H 1.48493 * 109.47207 * 269.99519 * 3 2 1 5 5 H 1.48503 * 109.47154 * 29.99887 * 3 2 1 6 6 H 1.48505 * 109.47068 * 149.99535 * 3 2 1 7 7 C 1.38951 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00157 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00212 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99349 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00186 * 179.97438 * 10 9 7 13 13 O 1.45206 * 109.47068 * 179.97438 * 12 10 9 14 14 C 1.34711 * 117.00070 * 179.97438 * 13 12 10 15 15 O 1.21477 * 119.99805 * 0.02562 * 14 13 12 16 16 C 1.47721 * 119.99864 * 180.02562 * 14 13 12 17 17 C 1.39644 * 120.19553 * 0.02562 * 16 14 13 18 18 C 1.37789 * 119.78152 * 179.97438 * 17 16 14 19 19 C 1.38669 * 120.41860 * 0.02562 * 18 17 16 20 20 C 1.38386 * 120.08979 * 359.97438 * 19 18 17 21 21 C 1.38221 * 120.00019 * 359.97438 * 20 19 18 22 22 C 1.51402 * 109.74459 * 179.97438 * 20 19 18 23 23 C 1.54338 * 105.17114 * 342.77918 * 22 20 19 24 24 C 1.51733 * 130.13285 * 179.78447 * 19 18 17 25 25 H 0.96997 * 120.00125 * 0.02562 * 1 2 3 26 26 H 0.97006 * 120.00537 * 359.97438 * 9 7 2 27 27 H 1.08995 * 109.47589 * 59.99705 * 12 10 9 28 28 H 1.09005 * 109.47064 * 299.99616 * 12 10 9 29 29 H 1.07994 * 120.10541 * 359.97438 * 17 16 14 30 30 H 1.08001 * 119.78925 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.95254 * 179.97438 * 21 20 19 32 32 H 1.09003 * 110.29985 * 223.86160 * 22 20 19 33 33 H 1.08993 * 110.38449 * 101.74571 * 22 20 19 34 34 H 1.09002 * 110.81764 * 144.64606 * 23 22 20 35 35 H 1.09002 * 110.82142 * 267.98937 * 23 22 20 36 36 H 1.09001 * 110.25222 * 78.32459 * 24 19 18 37 37 H 1.08996 * 110.49402 * 316.08356 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7002 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 8 2.1875 -5.9666 0.0004 14 6 1.6726 -7.2114 0.0013 15 8 0.4683 -7.3706 0.0022 16 6 2.5725 -8.3829 0.0012 17 6 3.9575 -8.2046 0.0007 18 6 4.7890 -9.3033 0.0012 19 6 4.2591 -10.5848 0.0016 20 6 2.8875 -10.7684 0.0021 21 6 2.0437 -9.6737 0.0027 22 6 2.5697 -12.2487 0.0019 23 6 3.8758 -12.9422 -0.4398 24 6 4.9575 -11.9318 -0.0022 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 0.6168 -4.9209 -0.8885 28 1 0.6176 -4.9205 0.8914 29 1 4.3755 -7.2088 0.0000 30 1 5.8602 -9.1656 0.0004 31 1 0.9733 -9.8179 0.0027 32 1 1.7693 -12.4635 -0.7062 33 1 2.2870 -12.5765 1.0022 34 1 4.0031 -13.8936 0.0767 35 1 3.8926 -13.0846 -1.5204 36 1 5.3183 -12.1727 0.9978 37 1 5.7836 -11.9314 -0.7132 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:56 Heat of formation + Delta-G solvation = -104.422216 kcal Electronic energy + Delta-G solvation = -21366.062630 eV Core-core repulsion = 17879.856966 eV Total energy + Delta-G solvation = -3486.205664 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.115 amu Computer time = 5.06 seconds Orbital eigenvalues (eV) -40.68283 -39.73666 -38.10540 -36.14766 -35.71562 -33.99120 -31.72604 -31.37651 -29.92044 -28.20053 -27.64704 -24.80207 -23.57741 -22.23809 -21.12931 -20.29849 -19.56688 -18.06272 -17.66669 -16.67768 -16.27652 -16.02425 -15.88918 -15.41081 -15.12619 -14.63471 -14.19874 -14.06059 -13.83486 -13.50610 -13.21479 -12.95652 -12.87871 -12.30685 -12.16990 -11.95672 -11.79303 -11.61548 -11.54612 -11.20326 -11.12649 -11.01976 -10.45414 -10.43704 -10.39436 -10.28377 -9.59913 -9.07158 -8.79128 -8.51619 -8.07630 -6.49290 -3.91316 0.59531 1.18349 2.55584 2.69177 3.13831 3.23909 3.30115 3.62305 3.74977 4.06822 4.14508 4.19555 4.60758 4.64019 4.76308 4.82646 4.92000 5.06537 5.15879 5.19737 5.32971 5.34441 5.43291 5.45602 5.55346 5.59564 5.71367 5.74163 5.80379 5.87245 6.05045 6.14359 6.22511 6.33515 6.61256 6.68119 7.48427 7.85568 7.97213 8.49249 9.07676 9.40050 9.89934 10.67975 Molecular weight = 289.11amu Principal moments of inertia in cm(-1) A = 0.046191 B = 0.002626 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.033899 B =10661.098346 C =11227.899123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.321 6.321 14 C 0.506 3.494 15 O -0.513 6.513 16 C -0.120 4.120 17 C -0.056 4.056 18 C -0.122 4.122 19 C -0.067 4.067 20 C -0.116 4.116 21 C -0.043 4.043 22 C -0.080 4.080 23 C -0.121 4.121 24 C -0.086 4.086 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.148 0.852 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 -23.394 -0.081 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.235 6.235 14 C 0.351 3.649 15 O -0.403 6.403 16 C -0.121 4.121 17 C -0.074 4.074 18 C -0.140 4.140 19 C -0.067 4.067 20 C -0.116 4.116 21 C -0.061 4.061 22 C -0.117 4.117 23 C -0.158 4.158 24 C -0.123 4.123 25 H 0.084 0.916 26 H 0.229 0.771 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.166 0.834 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.442 -23.227 -0.076 23.856 hybrid contribution -0.512 1.046 0.009 1.165 sum 4.930 -22.181 -0.067 22.722 Atomic orbital electron populations 1.69618 1.05998 1.28479 1.49689 1.25320 0.95695 0.99878 0.96916 0.85792 0.79220 0.80410 0.78490 1.20262 1.20817 1.19280 1.19723 0.93474 0.81746 1.48155 0.87611 1.41704 1.09388 1.04078 1.63838 1.19305 0.88326 0.84050 0.85929 1.90557 1.13398 1.86801 1.55262 1.22770 0.90839 0.84406 1.03615 1.86584 1.39996 1.13858 1.83055 1.21178 0.87092 0.83753 0.72923 1.90811 1.16072 1.86989 1.46432 1.18964 0.93156 0.90802 1.09185 1.21558 0.91914 1.00259 0.93645 1.20649 1.00324 0.90746 1.02243 1.20986 0.94668 0.94755 0.96287 1.20450 0.93694 0.95212 1.02228 1.20654 1.00479 0.89601 0.95405 1.21035 0.98502 0.89832 1.02310 1.22305 0.93835 0.98049 1.01660 1.21197 0.98198 0.90481 1.02407 0.91629 0.77136 0.89437 0.89430 0.83446 0.85234 0.84696 0.90471 0.90041 0.90402 0.90801 0.89765 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 2 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16 3 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.55 -14.11 5.29 -10.96 -0.06 -14.16 16 10 C 0.44 10.71 7.86 -10.99 -0.09 10.62 16 11 O -0.58 -16.06 16.08 -14.12 -0.23 -16.29 16 12 C 0.06 1.20 5.95 36.00 0.21 1.42 16 13 O -0.32 -6.22 9.01 -47.20 -0.43 -6.65 16 14 C 0.51 8.77 7.90 34.61 0.27 9.05 16 15 O -0.51 -9.57 16.14 -19.25 -0.31 -9.88 16 16 C -0.12 -1.73 5.87 -105.03 -0.62 -2.35 16 17 C -0.06 -0.73 9.62 -39.22 -0.38 -1.11 16 18 C -0.12 -1.30 10.02 -39.59 -0.40 -1.69 16 19 C -0.07 -0.66 6.15 -103.90 -0.64 -1.29 16 20 C -0.12 -1.20 6.12 -104.23 -0.64 -1.84 16 21 C -0.04 -0.54 9.59 -39.12 -0.38 -0.91 16 22 C -0.08 -0.58 6.77 -26.84 -0.18 -0.76 16 23 C -0.12 -0.70 7.07 -25.32 -0.18 -0.88 16 24 C -0.09 -0.58 6.80 -26.67 -0.18 -0.76 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 26 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.15 2.01 7.62 -52.49 -0.40 1.61 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.14 1.61 7.64 -52.48 -0.40 1.21 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -32.49 327.15 -8.25 -40.74 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.44 Total: 7.50 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -3.42 Total: 1.53 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.67 Total: -37.65 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.96 Total: -32.82 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.49 -8.25 -40.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.681 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.06 seconds