Wall clock time and date at job start Tue Mar 31 2020 02:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 119.99905 * 2 1 4 4 H 1.48505 * 109.47390 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47215 * 299.99567 * 3 2 1 6 6 H 1.48504 * 109.47608 * 59.99672 * 3 2 1 7 7 C 1.39947 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99638 * 163.62328 * 7 2 1 9 9 C 1.41389 * 120.00497 * 343.61653 * 7 2 1 10 10 C 1.40733 * 120.24206 * 334.05109 * 9 7 2 11 11 C 1.37601 * 119.74889 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24419 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.50143 * 0.02732 * 12 11 10 14 14 C 1.37635 * 120.24626 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.12570 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47033 * 264.99434 * 15 14 13 17 17 O 1.20829 * 120.00128 * 0.02562 * 16 15 14 18 18 O 1.34236 * 120.00126 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99728 * 180.02562 * 18 16 15 20 20 H 1.08997 * 110.85798 * 330.70334 * 19 18 16 21 21 C 1.54486 * 110.96613 * 206.91179 * 19 18 16 22 22 N 1.46764 * 105.47074 * 216.46340 * 21 19 18 23 23 C 1.34416 * 111.30209 * 17.02338 * 22 21 19 24 24 O 1.21277 * 124.94190 * 179.61459 * 23 22 21 25 25 C 1.51347 * 110.13196 * 359.55505 * 23 22 21 26 26 H 0.96995 * 119.99565 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.13112 * 0.03567 * 10 9 7 28 28 H 1.07995 * 119.88279 * 180.27329 * 11 10 9 29 29 H 1.07996 * 119.74565 * 179.97438 * 12 11 10 30 30 H 1.07996 * 119.87242 * 179.97438 * 13 12 11 31 31 H 1.08997 * 109.47567 * 24.99179 * 15 14 13 32 32 H 1.08999 * 109.47782 * 144.99732 * 15 14 13 33 33 H 1.08991 * 110.24725 * 335.46860 * 21 19 18 34 34 H 1.08999 * 110.24460 * 97.38276 * 21 19 18 35 35 H 0.96995 * 124.34552 * 197.03115 * 22 21 19 36 36 H 1.08994 * 110.52219 * 225.12612 * 25 23 22 37 37 H 1.08997 * 110.47439 * 102.45837 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0552 -1.2311 -0.2632 9 6 1.3442 -2.4115 0.3464 10 6 0.2138 -2.3798 1.1842 11 6 -0.4242 -3.5534 1.5147 12 6 0.0426 -4.7639 1.0253 13 6 1.1550 -4.8070 0.1995 14 6 1.8088 -3.6455 -0.1442 15 6 3.0176 -3.6955 -1.0427 16 6 4.2677 -3.7245 -0.2016 17 8 4.1855 -3.7069 1.0038 18 8 5.4726 -3.7709 -0.7915 19 6 6.6330 -3.7971 0.0809 20 1 6.4261 -3.2798 1.0177 21 6 7.8680 -3.1926 -0.6234 22 7 9.0103 -3.9924 -0.1658 23 6 8.6070 -5.1551 0.3747 24 8 9.3457 -6.0051 0.8249 25 6 7.0968 -5.2491 0.3414 26 1 -0.4849 0.8400 -0.0004 27 1 -0.1518 -1.4380 1.5661 28 1 -1.2944 -3.5312 2.1538 29 1 -0.4641 -5.6801 1.2902 30 1 1.5101 -5.7554 -0.1757 31 1 2.9745 -4.5925 -1.6603 32 1 3.0311 -2.8136 -1.6831 33 1 7.7614 -3.2715 -1.7053 34 1 7.9953 -2.1499 -0.3325 35 1 9.9371 -3.7172 -0.2433 36 1 6.7149 -5.6057 1.2979 37 1 6.7733 -5.9038 -0.4678 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761112903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:30 Heat of formation + Delta-G solvation = -123.735880 kcal Electronic energy + Delta-G solvation = -22416.451073 eV Core-core repulsion = 18929.407906 eV Total energy + Delta-G solvation = -3487.043167 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.115 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.89382 -40.87528 -39.38986 -37.89786 -36.63522 -35.49764 -33.58733 -31.82833 -31.34696 -29.07136 -28.35913 -26.92113 -23.75185 -22.82370 -22.18818 -21.76253 -21.06762 -19.07946 -18.84931 -18.63898 -17.44591 -17.08982 -17.05704 -16.64141 -16.23629 -15.94368 -15.47284 -15.37694 -14.78658 -14.66026 -14.38172 -14.30389 -13.99229 -13.56773 -13.43115 -13.35529 -12.91341 -12.75255 -12.70409 -12.50183 -12.27965 -12.08664 -11.91407 -11.36117 -11.32363 -11.22142 -11.07461 -11.02136 -10.24562 -9.23110 -9.20559 -8.59497 -6.30346 0.92032 1.10498 1.34381 1.40129 1.40237 1.52751 1.55326 1.71091 2.21830 2.30615 2.79385 3.19817 3.31798 3.55432 3.79611 3.93004 4.12233 4.34687 4.39709 4.47101 4.53602 4.60146 4.70145 4.71586 4.77844 4.82732 5.04789 5.20449 5.36567 5.45656 5.54179 5.64527 5.77399 5.86586 6.03466 6.15574 6.22399 6.40588 6.72722 6.92985 6.98341 7.08178 7.10232 8.37099 Molecular weight = 289.11amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.004745 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.142789 B = 5899.081270 C = 7268.015657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.972 3.028 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.272 1.272 7 C -0.483 4.483 8 H 0.076 0.924 9 C 0.099 3.901 10 C -0.193 4.193 11 C -0.114 4.114 12 C -0.244 4.244 13 C -0.084 4.084 14 C -0.202 4.202 15 C -0.041 4.041 16 C 0.469 3.531 17 O -0.526 6.526 18 O -0.338 6.338 19 C 0.067 3.933 20 H 0.095 0.905 21 C 0.114 3.886 22 N -0.710 5.710 23 C 0.527 3.473 24 O -0.576 6.576 25 C -0.172 4.172 26 H 0.286 0.714 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.427 0.573 36 H 0.101 0.899 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.625 -1.849 -5.348 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.793 3.207 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.198 1.198 7 C -0.513 4.513 8 H 0.095 0.905 9 C 0.097 3.903 10 C -0.212 4.212 11 C -0.133 4.133 12 C -0.263 4.263 13 C -0.102 4.102 14 C -0.203 4.203 15 C -0.078 4.078 16 C 0.313 3.687 17 O -0.413 6.413 18 O -0.255 6.255 19 C 0.010 3.990 20 H 0.113 0.887 21 C -0.010 4.010 22 N -0.367 5.367 23 C 0.313 3.687 24 O -0.456 6.456 25 C -0.212 4.212 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.268 0.732 36 H 0.120 0.880 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.686 -2.142 -4.763 12.800 hybrid contribution 0.191 0.910 0.527 1.069 sum 11.877 -1.233 -4.236 12.670 Atomic orbital electron populations 1.69886 1.08939 1.30286 1.35926 1.26685 0.95384 1.04295 0.91417 0.85310 0.79721 0.76880 0.78794 1.17917 1.18722 1.19764 1.19700 0.97414 0.91852 1.42314 0.90548 1.17732 0.91295 0.92769 0.88502 1.21313 1.00550 0.96791 1.02591 1.20980 0.99026 0.93455 0.99791 1.20728 1.01706 0.96751 1.07123 1.20772 0.95446 0.96736 0.97257 1.19475 1.00656 0.93649 1.06556 1.20022 0.85157 1.06295 0.96362 1.24419 0.85066 0.70878 0.88336 1.90654 1.87272 1.45757 1.17625 1.86569 1.14358 1.84165 1.40414 1.23510 0.84502 0.96138 0.94807 0.88737 1.22133 0.81419 0.96216 1.01219 1.46093 1.10652 1.18978 1.61011 1.20741 0.90719 0.81440 0.75782 1.90743 1.61651 1.44132 1.49062 1.22780 0.93110 0.98733 1.06555 0.90324 0.88530 0.87786 0.86716 0.86130 0.85502 0.87029 0.87210 0.86501 0.73183 0.88049 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.92 10.97 21.83 0.24 -41.68 16 2 C 0.04 1.80 5.16 85.26 0.44 2.24 16 3 Si 0.97 36.68 29.59 68.60 2.03 38.71 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 5 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.48 -24.45 8.14 23.46 0.19 -24.26 16 8 H 0.08 3.68 6.68 -2.91 -0.02 3.66 16 9 C 0.10 5.13 5.56 -21.29 -0.12 5.01 16 10 C -0.19 -10.20 8.68 22.73 0.20 -10.00 16 11 C -0.11 -5.38 10.02 22.22 0.22 -5.16 16 12 C -0.24 -10.52 10.05 22.46 0.23 -10.30 16 13 C -0.08 -3.52 9.66 22.22 0.21 -3.31 16 14 C -0.20 -9.01 4.43 -19.41 -0.09 -9.09 16 15 C -0.04 -1.44 5.29 29.10 0.15 -1.29 16 16 C 0.47 16.29 7.59 71.24 0.54 16.83 16 17 O -0.53 -22.37 15.28 21.96 0.34 -22.04 16 18 O -0.34 -8.97 9.99 -51.47 -0.51 -9.48 16 19 C 0.07 1.49 3.48 31.65 0.11 1.60 16 20 H 0.09 2.45 7.22 -2.39 -0.02 2.43 16 21 C 0.11 1.60 7.55 86.83 0.66 2.25 16 22 N -0.71 -11.18 6.24 -459.74 -2.87 -14.04 16 23 C 0.53 12.42 8.43 87.92 0.74 13.16 16 24 O -0.58 -18.45 18.03 -3.02 -0.05 -18.51 16 25 C -0.17 -3.81 6.63 30.61 0.20 -3.61 16 26 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 27 H 0.10 5.37 6.22 -2.91 -0.02 5.36 16 28 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 29 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 30 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.13 3.43 8.05 -2.39 -0.02 3.41 16 32 H 0.11 3.86 7.06 -2.39 -0.02 3.85 16 33 H 0.11 1.23 8.10 -2.39 -0.02 1.21 16 34 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.43 4.82 8.96 -92.71 -0.83 3.99 16 36 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.13 2.54 8.11 -2.39 -0.02 2.52 16 Total: -1.00 -67.74 321.25 3.14 -64.60 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.28 Total: 28.37 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 3.69 Total: -25.93 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -2.63 Total: -55.72 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.23 Total: -50.03 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 2.03 Total: 38.71 kcal Total: -67.74 3.14 -64.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761112903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.138 kcal (2) G-P(sol) polarization free energy of solvation -67.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds