Wall clock time and date at job start Tue Mar 31 2020 02:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99890 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99876 * 3 2 1 5 5 H 1.48500 * 109.47032 * 29.99623 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99892 * 3 2 1 7 7 C 1.38949 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99856 * 180.02562 * 7 2 1 9 9 N 1.37088 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00081 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00033 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34232 * 116.99878 * 179.97438 * 13 12 10 15 15 O 1.20825 * 120.00049 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99727 * 180.02562 * 14 13 12 17 17 C 1.54345 * 110.82169 * 292.97038 * 16 14 13 18 18 C 1.51380 * 105.17200 * 215.43137 * 17 16 14 19 19 C 1.38494 * 130.38960 * 197.19238 * 18 17 16 20 20 C 1.38108 * 120.21071 * 179.97438 * 19 18 17 21 21 C 1.38253 * 119.93591 * 0.02562 * 20 19 18 22 22 C 1.38101 * 119.93429 * 359.97438 * 21 20 19 23 23 C 1.38222 * 109.75494 * 17.18805 * 18 17 16 24 24 C 1.51365 * 109.75943 * 359.97438 * 23 18 17 25 25 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00446 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.47103 * 60.00241 * 12 10 9 28 28 H 1.09000 * 109.47247 * 300.00119 * 12 10 9 29 29 H 1.08990 * 110.73206 * 56.59654 * 16 14 13 30 30 H 1.09004 * 110.30603 * 334.34820 * 17 16 14 31 31 H 1.08995 * 110.30686 * 96.50455 * 17 16 14 32 32 H 1.07996 * 119.89481 * 359.97438 * 19 18 17 33 33 H 1.07997 * 120.02645 * 179.97438 * 20 19 18 34 34 H 1.07998 * 120.02987 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.89103 * 180.02562 * 22 21 20 36 36 H 1.09001 * 110.30601 * 223.88863 * 24 23 18 37 37 H 1.09004 * 110.38626 * 101.77804 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2438 -4.8629 0.0022 13 8 2.1874 -5.9666 0.0027 14 6 1.6744 -7.2070 0.0038 15 8 0.4765 -7.3653 0.0038 16 6 2.5924 -8.4020 0.0049 17 6 3.3732 -8.4953 -1.3232 18 6 3.5021 -9.9773 -1.6037 19 6 4.3519 -10.6581 -2.4595 20 6 4.2891 -12.0346 -2.5515 21 6 3.3748 -12.7361 -1.7876 22 6 2.5266 -12.0590 -0.9337 23 6 2.5881 -10.6786 -0.8400 24 6 1.7830 -9.7160 0.0065 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3907 0.0016 27 1 0.6168 -4.9208 -0.8876 28 1 0.6175 -4.9204 0.8924 29 1 3.2724 -8.3653 0.8559 30 1 2.8181 -8.0059 -2.1235 31 1 4.3592 -8.0437 -1.2148 32 1 5.0661 -10.1107 -3.0568 33 1 4.9529 -12.5625 -3.2201 34 1 3.3241 -13.8126 -1.8587 35 1 1.8129 -12.6077 -0.3371 36 1 1.6831 -10.0981 1.0224 37 1 0.7993 -9.5540 -0.4344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763395430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:47 Heat of formation + Delta-G solvation = -102.035260 kcal Electronic energy + Delta-G solvation = -21480.837360 eV Core-core repulsion = 17994.735203 eV Total energy + Delta-G solvation = -3486.102158 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.92797 -39.76213 -38.16012 -36.36361 -35.58050 -34.01033 -31.65394 -31.39418 -29.96320 -28.26404 -27.50435 -24.88355 -23.82894 -21.77120 -21.17039 -20.13809 -19.58983 -18.08551 -17.76723 -16.67514 -16.49925 -16.26548 -15.68725 -15.52666 -15.12294 -14.63800 -14.13004 -13.99961 -13.70260 -13.48857 -13.24503 -13.10331 -12.87894 -12.56925 -12.22381 -12.03753 -11.63199 -11.49130 -11.46349 -11.35791 -11.14097 -11.01335 -10.45203 -10.43268 -10.40092 -10.28740 -9.61438 -9.03173 -8.73024 -8.53267 -8.09253 -6.50842 -3.92899 1.11708 1.16299 2.24135 2.65166 3.12668 3.22942 3.29076 3.52406 3.72725 4.03700 4.09066 4.27756 4.62884 4.73278 4.76686 4.82121 4.92716 4.95249 5.13838 5.14732 5.28409 5.38228 5.49603 5.52371 5.54250 5.64780 5.68158 5.81246 5.89195 5.93120 6.04467 6.20657 6.27846 6.41472 6.60286 6.76694 7.46968 7.80831 7.94828 8.47588 9.06220 9.38394 9.88283 10.66385 Molecular weight = 289.11amu Principal moments of inertia in cm(-1) A = 0.042964 B = 0.002615 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.548107 B =10703.740254 C =11157.791983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.059 3.941 13 O -0.322 6.322 14 C 0.468 3.532 15 O -0.511 6.511 16 C -0.081 4.081 17 C -0.070 4.070 18 C -0.094 4.094 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.106 4.106 23 C -0.093 4.093 24 C -0.071 4.071 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 -21.927 -2.422 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.018 4.018 13 O -0.236 6.236 14 C 0.310 3.690 15 O -0.400 6.400 16 C -0.100 4.100 17 C -0.107 4.107 18 C -0.094 4.094 19 C -0.122 4.122 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.124 4.124 23 C -0.093 4.093 24 C -0.108 4.108 25 H 0.084 0.916 26 H 0.228 0.772 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.814 -21.753 -2.413 22.217 hybrid contribution -0.462 0.862 -0.010 0.978 sum 3.352 -20.891 -2.424 21.297 Atomic orbital electron populations 1.69616 1.06004 1.28495 1.49664 1.25319 0.95693 0.99886 0.96893 0.85793 0.79228 0.80401 0.78504 1.20252 1.20809 1.19270 1.19723 0.93477 0.81752 1.48180 0.87610 1.41709 1.09377 1.04103 1.63823 1.19317 0.88339 0.84067 0.85988 1.90564 1.13392 1.86784 1.55234 1.22775 0.90883 0.84632 1.03528 1.86559 1.40268 1.14091 1.82666 1.23357 0.88360 0.84845 0.72409 1.90647 1.16773 1.86740 1.45794 1.21624 0.96880 0.90027 1.01481 1.20953 1.01733 0.92573 0.95474 1.20529 0.96440 0.95385 0.97044 1.20647 0.98892 0.94145 0.98486 1.21044 0.99164 0.93923 0.99822 1.21035 0.96240 0.99780 0.96865 1.20600 0.99645 0.92725 0.99435 1.20527 0.97030 0.93687 0.98089 1.21010 0.99034 0.90408 1.00377 0.91619 0.77156 0.89523 0.89498 0.86098 0.89374 0.88757 0.85954 0.85872 0.85911 0.86121 0.89705 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 8 H 0.11 3.04 7.16 -52.48 -0.38 2.66 16 9 N -0.55 -13.95 5.29 -10.96 -0.06 -14.01 16 10 C 0.44 10.52 7.86 -10.99 -0.09 10.44 16 11 O -0.58 -15.92 16.08 -14.12 -0.23 -16.15 16 12 C 0.06 1.12 5.94 36.01 0.21 1.34 16 13 O -0.32 -5.88 9.76 -45.91 -0.45 -6.33 16 14 C 0.47 7.19 7.17 36.00 0.26 7.44 16 15 O -0.51 -8.68 15.25 -18.75 -0.29 -8.97 16 16 C -0.08 -0.94 3.58 -90.37 -0.32 -1.27 16 17 C -0.07 -0.78 6.31 -26.84 -0.17 -0.95 16 18 C -0.09 -1.00 6.14 -104.20 -0.64 -1.64 16 19 C -0.10 -0.98 10.04 -39.53 -0.40 -1.38 16 20 C -0.12 -1.02 10.05 -39.62 -0.40 -1.42 16 21 C -0.12 -1.00 10.05 -39.63 -0.40 -1.40 16 22 C -0.11 -0.97 10.04 -39.54 -0.40 -1.36 16 23 C -0.09 -0.97 6.14 -104.21 -0.64 -1.61 16 24 C -0.07 -0.75 6.11 -26.86 -0.16 -0.91 16 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 27 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 28 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 29 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.03 7.89 -51.93 -0.41 0.62 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.18 6.98 -51.93 -0.36 0.82 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -32.27 326.05 -8.20 -40.46 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.41 Total: 8.40 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -3.38 Total: -0.64 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.67 Total: -37.32 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.96 Total: -31.45 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.27 -8.20 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763395430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.574 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds