Wall clock time and date at job start Tue Mar 31 2020 02:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00086 * 2 1 4 4 H 1.48494 * 109.46921 * 240.00182 * 3 2 1 5 5 H 1.48497 * 109.46726 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46937 * 120.00144 * 3 2 1 7 7 C 1.38703 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34812 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.35518 * 116.99588 * 185.10212 * 9 7 2 11 11 C 1.38829 * 120.16602 * 353.88435 * 10 9 7 12 12 C 1.38032 * 120.07490 * 179.71871 * 11 10 9 13 13 C 1.38570 * 120.39922 * 0.56963 * 12 11 10 14 14 C 1.37824 * 120.32281 * 359.71336 * 13 12 11 15 15 C 1.39666 * 119.92272 * 0.02562 * 14 13 12 16 16 C 1.47534 * 120.19683 * 180.02562 * 15 14 13 17 17 O 1.21593 * 119.99553 * 218.18522 * 16 15 14 18 18 N 1.34769 * 120.00507 * 38.18020 * 16 15 14 19 19 C 1.48148 * 127.83605 * 355.71201 * 18 16 15 20 20 C 1.54394 * 104.61669 * 140.41419 * 19 18 16 21 21 H 1.08999 * 117.61483 * 242.76054 * 20 19 18 22 22 C 1.53003 * 118.12274 * 87.19100 * 20 19 18 23 23 C 1.53005 * 60.55589 * 268.45810 * 22 20 19 24 24 O 1.42897 * 119.53767 * 248.23871 * 23 22 20 25 25 C 1.48146 * 127.83935 * 175.38707 * 18 16 15 26 26 H 0.96995 * 120.00225 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.96368 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.79991 * 180.28032 * 12 11 10 29 29 H 1.07994 * 119.83528 * 179.74081 * 13 12 11 30 30 H 1.08009 * 120.03834 * 179.97438 * 14 13 12 31 31 H 1.08995 * 110.40716 * 259.19523 * 19 18 16 32 32 H 1.08999 * 110.40978 * 21.51000 * 19 18 16 33 33 H 1.08997 * 117.44291 * 16.10581 * 22 20 19 34 34 H 1.08992 * 117.44104 * 160.81065 * 22 20 19 35 35 H 0.96709 * 113.99146 * 250.70641 * 24 23 22 36 36 H 1.08997 * 110.41049 * 338.37746 * 25 18 16 37 37 H 1.09008 * 110.40154 * 100.80626 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3346 -2.3687 0.0005 10 6 2.0686 -3.5028 0.1085 11 6 3.4553 -3.4412 0.0851 12 6 4.2011 -4.5969 0.2010 13 6 3.5742 -5.8260 0.3294 14 6 2.1985 -5.9069 0.3487 15 6 1.4307 -4.7454 0.2379 16 6 -0.0423 -4.8249 0.2584 17 8 -0.7003 -4.1008 -0.4636 18 7 -0.6587 -5.7001 1.0772 19 6 -0.0348 -6.7158 1.9568 20 6 -0.8768 -6.6808 3.2505 21 1 -0.3753 -6.3847 4.1719 22 6 -2.1272 -7.5597 3.3212 23 6 -2.2475 -6.1196 2.8186 24 8 -2.9485 -5.1549 3.6059 25 6 -2.1135 -5.8603 1.3067 26 1 -0.4850 0.8400 0.0004 27 1 3.9512 -2.4875 -0.0198 28 1 5.2796 -4.5433 0.1868 29 1 4.1666 -6.7249 0.4153 30 1 1.7147 -6.8673 0.4486 31 1 -0.0877 -7.7020 1.4957 32 1 1.0011 -6.4509 2.1682 33 1 -2.2223 -8.3581 2.5854 34 1 -2.5297 -7.7820 4.3094 35 1 -3.7963 -4.8812 3.2295 36 1 -2.6445 -4.9496 1.0297 37 1 -2.4958 -6.7109 0.7423 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882339143.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:33 Heat of formation + Delta-G solvation = -53.884469 kcal Electronic energy + Delta-G solvation = -22955.162963 eV Core-core repulsion = 19471.148780 eV Total energy + Delta-G solvation = -3484.014183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75349 -40.72369 -39.23521 -38.08419 -36.60487 -34.38916 -34.20442 -32.19313 -30.64940 -29.24453 -27.64271 -27.21875 -24.22352 -23.22007 -22.46987 -21.34235 -20.91474 -19.92412 -18.88741 -18.31369 -17.75270 -17.01924 -16.83710 -16.37643 -16.03453 -15.77671 -15.51941 -15.47216 -15.13572 -14.80212 -14.41643 -14.37127 -13.98280 -13.77829 -13.58802 -13.32254 -13.00070 -12.74554 -12.65268 -12.52500 -12.28876 -12.22278 -12.15029 -11.52492 -11.34581 -10.86539 -10.85055 -10.30493 -9.89510 -9.75387 -9.07305 -8.49834 -6.21049 0.15800 0.68349 1.29916 1.43281 1.48425 1.69370 1.99991 2.13539 2.41729 2.79684 2.93566 3.13100 3.34611 3.39326 3.59516 3.75611 3.91676 4.05529 4.12836 4.25298 4.38253 4.49899 4.54635 4.58539 4.61250 4.74045 4.80648 4.92063 4.98748 5.03382 5.07739 5.13886 5.25408 5.47933 5.57985 5.67262 5.92439 6.14491 6.44968 6.67325 6.90453 7.21633 7.73956 8.71884 Molecular weight = 289.11amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.005526 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.239346 B = 5065.338247 C = 6322.477254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.025 4.025 3 Si 1.025 2.975 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.425 4.425 8 H 0.109 0.891 9 O -0.207 6.207 10 C 0.146 3.854 11 C -0.253 4.253 12 C -0.042 4.042 13 C -0.193 4.193 14 C -0.036 4.036 15 C -0.236 4.236 16 C 0.579 3.421 17 O -0.580 6.580 18 N -0.625 5.625 19 C 0.119 3.881 20 C -0.175 4.175 21 H 0.120 0.880 22 C -0.101 4.101 23 C 0.003 3.997 24 O -0.543 6.543 25 C 0.116 3.884 26 H 0.272 0.728 27 H 0.125 0.875 28 H 0.157 0.843 29 H 0.169 0.831 30 H 0.161 0.839 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.398 0.602 36 H 0.055 0.945 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 -18.379 6.569 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.223 4.223 3 Si 0.843 3.157 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.500 4.500 8 H 0.126 0.874 9 O -0.111 6.111 10 C 0.092 3.908 11 C -0.272 4.272 12 C -0.060 4.060 13 C -0.212 4.212 14 C -0.054 4.054 15 C -0.240 4.240 16 C 0.371 3.629 17 O -0.460 6.460 18 N -0.360 5.360 19 C -0.002 4.002 20 C -0.194 4.194 21 H 0.138 0.862 22 C -0.138 4.138 23 C -0.039 4.039 24 O -0.351 6.351 25 C -0.006 4.006 26 H 0.081 0.919 27 H 0.142 0.858 28 H 0.174 0.826 29 H 0.186 0.814 30 H 0.178 0.822 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.249 0.751 36 H 0.074 0.926 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.187 -17.768 6.451 19.029 hybrid contribution -0.639 1.758 -0.415 1.916 sum 1.548 -16.009 6.036 17.179 Atomic orbital electron populations 1.70283 1.08508 1.28832 1.47434 1.26814 0.96773 1.03279 0.95439 0.84586 0.77323 0.73591 0.80238 1.17703 1.19778 1.17626 1.21984 0.92743 0.81491 1.53827 0.87389 1.84066 1.35816 1.12547 1.78673 1.20003 0.91833 0.87202 0.91802 1.21296 0.92024 1.01175 1.12717 1.21452 1.00814 0.91155 0.92570 1.21210 0.93638 0.98581 1.07734 1.21402 0.94486 0.95593 0.93959 1.19106 0.91697 0.93345 1.19895 1.18214 0.88117 0.77687 0.78840 1.90802 1.67960 1.43681 1.43569 1.49086 1.07707 1.36209 1.43013 1.22439 0.97960 0.92213 0.87597 1.24136 0.89920 1.05703 0.99648 0.86193 1.23716 0.94875 0.90791 1.04458 1.22803 0.99959 0.92210 0.88927 1.86387 1.38452 1.60913 1.49390 1.22122 0.82166 1.02575 0.93739 0.91938 0.85768 0.82559 0.81398 0.82204 0.86259 0.88802 0.85027 0.85918 0.75106 0.92639 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.87 13.67 21.62 0.30 -60.57 16 2 C -0.02 -1.49 5.49 84.85 0.47 -1.03 16 3 Si 1.02 44.86 29.55 68.60 2.03 46.89 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 7 C -0.42 -26.17 9.49 67.93 0.64 -25.52 16 8 H 0.11 5.93 5.21 -2.91 -0.02 5.91 16 9 O -0.21 -13.55 8.49 -4.20 -0.04 -13.58 16 10 C 0.15 7.71 6.62 22.91 0.15 7.86 16 11 C -0.25 -10.95 9.16 22.36 0.20 -10.74 16 12 C -0.04 -1.30 10.03 22.30 0.22 -1.08 16 13 C -0.19 -5.14 10.02 22.25 0.22 -4.91 16 14 C -0.04 -1.13 7.77 22.52 0.18 -0.95 16 15 C -0.24 -10.67 5.55 -19.99 -0.11 -10.78 16 16 C 0.58 28.05 7.40 86.70 0.64 28.69 16 17 O -0.58 -35.35 16.37 11.81 0.19 -35.15 16 18 N -0.63 -22.18 3.32 -812.48 -2.70 -24.88 16 19 C 0.12 2.75 5.17 86.54 0.45 3.20 16 20 C -0.17 -3.85 7.13 -9.88 -0.07 -3.92 16 21 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 22 C -0.10 -1.50 10.06 30.60 0.31 -1.19 16 23 C 0.00 0.09 3.90 -10.02 -0.04 0.05 16 24 O -0.54 -15.46 13.97 -148.98 -2.08 -17.54 16 25 C 0.12 3.47 6.78 86.40 0.59 4.05 16 26 H 0.27 16.57 8.31 -92.71 -0.77 15.80 16 27 H 0.12 5.43 5.65 -2.91 -0.02 5.41 16 28 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 29 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.16 3.57 6.14 -2.91 -0.02 3.56 16 31 H 0.12 1.75 8.10 -2.39 -0.02 1.73 16 32 H 0.09 2.22 5.78 -2.39 -0.01 2.21 16 33 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.40 8.17 9.12 -74.05 -0.68 7.49 16 36 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 37 H 0.11 2.52 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -94.74 316.20 2.00 -92.74 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.45 Total: 28.38 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 3.85 Total: -16.28 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.40 Total: -85.45 kcal Atomic # 8 Polarization: -64.35 SS G_CDS: -1.92 Total: -66.28 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -94.74 2.00 -92.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882339143.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.851 kcal (2) G-P(sol) polarization free energy of solvation -94.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds