Wall clock time and date at job start Tue Mar 31 2020 04:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99844 * 2 1 4 4 O 1.20820 * 120.00336 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99375 * 179.71993 * 3 2 1 6 6 H 1.08994 * 109.40932 * 337.03610 * 5 3 2 7 7 C 1.53251 * 109.40498 * 96.80748 * 5 3 2 8 8 S 1.81897 * 108.50522 * 182.12246 * 7 5 3 9 9 C 1.81902 * 101.91216 * 308.68736 * 8 7 5 10 10 C 1.53253 * 108.50552 * 51.30659 * 9 8 7 11 11 N 1.46469 * 109.85875 * 297.99687 * 10 9 8 12 12 C 1.46903 * 110.99986 * 197.76190 * 11 10 9 13 13 C 1.53005 * 109.46679 * 50.46425 * 12 11 10 14 14 O 1.42896 * 109.47113 * 61.16707 * 13 12 11 15 15 C 1.42902 * 113.99983 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47368 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99811 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99948 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00013 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00275 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99560 * 20 18 16 22 22 H 1.48503 * 109.47210 * 209.99773 * 20 18 16 23 23 H 1.48499 * 109.47053 * 329.99815 * 20 18 16 24 24 H 1.09008 * 109.46635 * 60.00106 * 1 2 3 25 25 H 1.08994 * 109.47387 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47661 * 300.00765 * 1 2 3 27 27 H 1.09009 * 109.62860 * 301.82062 * 7 5 3 28 28 H 1.08994 * 109.63666 * 62.40906 * 7 5 3 29 29 H 1.09002 * 109.63232 * 291.60193 * 9 8 7 30 30 H 1.08998 * 109.63605 * 171.01245 * 9 8 7 31 31 H 1.08998 * 109.40675 * 177.87502 * 10 9 8 32 32 H 1.08997 * 109.34044 * 58.07576 * 10 9 8 33 33 H 1.08997 * 109.47354 * 170.45958 * 12 11 10 34 34 H 1.09004 * 109.47030 * 290.46636 * 12 11 10 35 35 H 1.09000 * 109.46782 * 181.16625 * 13 12 11 36 36 H 1.09004 * 109.46775 * 301.16216 * 13 12 11 37 37 H 1.09003 * 109.46865 * 300.00405 * 15 14 13 38 38 H 1.09002 * 109.47223 * 59.99676 * 15 14 13 39 39 H 0.96995 * 119.99956 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0064 6 1 3.9758 0.3494 0.4113 7 6 4.0721 1.4693 -1.4271 8 16 5.8906 1.4977 -1.3989 9 6 6.2269 2.7380 -0.1115 10 6 5.4244 2.3689 1.1409 11 7 3.9911 2.4011 0.8409 12 6 3.1965 2.4713 2.0745 13 6 3.7262 3.6022 2.9585 14 8 3.6010 4.8462 2.2666 15 6 4.0693 5.9739 3.0089 16 6 3.8898 7.2252 2.1885 17 1 3.4614 7.1652 1.1990 18 6 4.2726 8.4465 2.7011 19 7 4.1164 9.5384 1.9849 20 14 5.0143 8.5501 4.4124 21 1 6.4895 8.4050 4.3221 22 1 4.6823 9.8653 5.0170 23 1 4.4609 7.4625 5.2585 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.7284 0.6447 -2.0518 28 1 3.6972 2.4131 -1.8229 29 1 5.9227 3.7235 -0.4641 30 1 7.2911 2.7425 0.1237 31 1 5.6443 3.0823 1.9352 32 1 5.7039 1.3670 1.4665 33 1 2.1533 2.6641 1.8242 34 1 3.2729 1.5251 2.6102 35 1 3.1499 3.6410 3.8829 36 1 4.7753 3.4201 3.1918 37 1 3.4999 6.0617 3.9342 38 1 5.1255 5.8412 3.2436 39 1 4.3860 10.3976 2.3454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887077312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:48 Heat of formation + Delta-G solvation = -128.731152 kcal Electronic energy + Delta-G solvation = -21827.810176 eV Core-core repulsion = 18475.994349 eV Total energy + Delta-G solvation = -3351.815827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98016 -39.71834 -38.20573 -37.40098 -34.90578 -33.43487 -32.55132 -30.25967 -28.86603 -28.36430 -25.65615 -24.19914 -23.96569 -22.53686 -21.20551 -19.20750 -19.03457 -18.31277 -17.60839 -17.42322 -17.10872 -16.90763 -16.48068 -16.15217 -15.98189 -15.23355 -15.13278 -14.81397 -14.68261 -14.44887 -14.20736 -14.00855 -13.57650 -13.40489 -13.11453 -12.97955 -12.81838 -12.72815 -12.56281 -12.42609 -12.14931 -11.84607 -11.78360 -11.43505 -11.24666 -10.91321 -10.80617 -10.28148 -9.45765 -8.77114 -8.36418 -6.44431 0.60827 0.95045 1.25216 1.32375 1.36480 1.47137 1.69943 2.29587 2.52459 2.96072 3.05824 3.47730 3.69773 3.73137 3.82325 4.04515 4.09491 4.17571 4.21540 4.28573 4.30037 4.32017 4.42761 4.47047 4.57388 4.62993 4.68521 4.77944 4.86887 4.94612 5.01481 5.22751 5.44764 5.70542 5.86811 5.97776 6.60401 6.63253 6.79625 7.20292 8.81374 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017413 B = 0.004546 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.597537 B = 6157.804269 C = 6995.217299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.466 3.534 4 O -0.513 6.513 5 C 0.105 3.895 6 H 0.111 0.889 7 C -0.068 4.068 8 S -0.247 6.247 9 C -0.078 4.078 10 C 0.057 3.943 11 N -0.550 5.550 12 C 0.055 3.945 13 C 0.049 3.951 14 O -0.391 6.391 15 C 0.180 3.820 16 C -0.542 4.542 17 H 0.023 0.977 18 C 0.012 3.988 19 N -0.945 5.945 20 Si 0.959 3.041 21 H -0.256 1.256 22 H -0.275 1.275 23 H -0.245 1.245 24 H 0.060 0.940 25 H 0.139 0.861 26 H 0.059 0.941 27 H 0.138 0.862 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.008 0.992 38 H 0.014 0.986 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -25.157 0.001 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.307 3.693 4 O -0.400 6.400 5 C -0.005 4.005 6 H 0.128 0.872 7 C -0.217 4.217 8 S -0.019 6.019 9 C -0.226 4.226 10 C -0.071 4.071 11 N -0.278 5.278 12 C -0.071 4.071 13 C -0.027 4.027 14 O -0.310 6.310 15 C 0.104 3.896 16 C -0.580 4.580 17 H 0.041 0.959 18 C -0.186 4.186 19 N -0.585 5.585 20 Si 0.780 3.220 21 H -0.180 1.180 22 H -0.200 1.200 23 H -0.168 1.168 24 H 0.079 0.921 25 H 0.157 0.843 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.032 0.968 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.099 -24.846 -1.107 24.895 hybrid contribution -0.906 1.035 1.496 2.032 sum 0.193 -23.811 0.389 23.815 Atomic orbital electron populations 1.23595 0.74496 1.05972 1.02494 1.86499 1.25110 1.31910 1.83583 1.23659 0.91799 0.81597 0.72291 1.90753 1.67446 1.37468 1.44360 1.21479 0.87194 0.95708 0.96161 0.87189 1.23399 0.94853 1.07014 0.96445 1.86729 1.05948 1.54894 1.54304 1.23607 1.04452 0.99306 0.95278 1.22421 0.84686 1.02628 0.97362 1.60825 1.05353 1.42263 1.19324 1.22333 0.98654 0.97062 0.89089 1.22783 1.00484 0.84723 0.94755 1.88044 1.84764 1.14778 1.43433 1.20294 0.93444 0.84274 0.91592 1.21144 1.42525 0.91765 1.02572 0.95905 1.25882 0.95428 0.94235 1.03054 1.70054 1.48869 0.99411 1.40169 0.85567 0.79660 0.78786 0.78035 1.18049 1.20038 1.16812 0.92100 0.84313 0.92247 0.84439 0.90282 0.91040 0.84989 0.88603 0.90545 0.90833 0.90313 0.92389 0.91505 0.97423 0.96796 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.15 10.57 -51.43 -0.54 -7.69 16 3 C 0.47 12.07 5.83 71.24 0.42 12.49 16 4 O -0.51 -17.90 14.57 21.98 0.32 -17.58 16 5 C 0.11 2.45 2.37 44.33 0.11 2.55 16 6 H 0.11 1.96 7.91 -2.39 -0.02 1.94 16 7 C -0.07 -1.54 5.95 72.07 0.43 -1.12 16 8 S -0.25 -5.60 22.40 -56.49 -1.27 -6.87 16 9 C -0.08 -1.90 6.69 72.07 0.48 -1.42 16 10 C 0.06 1.35 5.19 86.47 0.45 1.80 16 11 N -0.55 -15.68 4.18 -876.58 -3.66 -19.34 16 12 C 0.06 1.59 4.77 86.30 0.41 2.00 16 13 C 0.05 1.63 5.54 71.98 0.40 2.02 16 14 O -0.39 -18.54 10.21 -148.98 -1.52 -20.06 16 15 C 0.18 9.08 4.76 71.24 0.34 9.42 16 16 C -0.54 -33.88 9.99 25.60 0.26 -33.63 16 17 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 18 C 0.01 0.69 5.47 84.65 0.46 1.15 16 19 N -0.95 -60.79 13.96 21.45 0.30 -60.50 16 20 Si 0.96 43.57 27.47 68.60 1.88 45.45 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 24 H 0.06 0.98 8.13 -2.38 -0.02 0.96 16 25 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 27 H 0.14 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.13 2.57 8.14 -2.39 -0.02 2.56 16 31 H 0.10 2.48 5.17 -2.39 -0.01 2.46 16 32 H 0.08 1.37 7.91 -2.39 -0.02 1.35 16 33 H 0.07 2.54 5.60 -2.39 -0.01 2.53 16 34 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.87 5.88 -2.38 -0.01 1.86 16 37 H 0.01 0.39 7.20 -2.39 -0.02 0.38 16 38 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 39 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -78.62 328.08 1.44 -77.18 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.98 Total: 12.51 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 4.95 Total: -3.11 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.37 Total: -79.84 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.74 Total: -45.33 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.45 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -1.27 Total: -6.87 kcal Total: -78.62 1.44 -77.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887077312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.550 kcal (2) G-P(sol) polarization free energy of solvation -78.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds