Wall clock time and date at job start Tue Mar 31 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99965 * 2 1 4 4 H 1.48496 * 109.47146 * 270.00035 * 3 2 1 5 5 H 1.48495 * 109.46874 * 30.00483 * 3 2 1 6 6 H 1.48499 * 109.46899 * 150.00221 * 3 2 1 7 7 C 1.38802 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00180 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99880 * 179.97438 * 7 2 1 10 10 C 1.81007 * 100.00043 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.46998 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00678 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99792 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00194 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47203 * 34.99902 * 14 13 11 16 16 C 1.52996 * 109.47231 * 275.00069 * 14 13 11 17 17 O 1.42898 * 109.47084 * 294.99798 * 16 14 13 18 18 C 1.53002 * 109.47288 * 154.99550 * 14 13 11 19 19 C 1.52998 * 109.47279 * 295.00282 * 18 14 13 20 20 H 1.08997 * 110.67587 * 303.48680 * 19 18 14 21 21 C 1.55000 * 110.61526 * 180.52087 * 19 18 14 22 22 C 1.54818 * 102.09030 * 204.47771 * 21 19 18 23 23 C 1.54097 * 104.18808 * 20.87976 * 22 21 19 24 24 O 1.43745 * 107.29442 * 2.03270 * 23 22 21 25 25 H 0.96992 * 119.99700 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47010 * 59.99634 * 10 9 7 27 27 H 1.09002 * 109.46774 * 300.00147 * 10 9 7 28 28 H 0.96997 * 120.00076 * 359.97438 * 13 11 10 29 29 H 1.08993 * 109.47240 * 55.00029 * 16 14 13 30 30 H 1.09000 * 109.47251 * 174.99725 * 16 14 13 31 31 H 0.96702 * 113.99907 * 179.97438 * 17 16 14 32 32 H 1.09001 * 109.47372 * 174.99878 * 18 14 13 33 33 H 1.09000 * 109.46871 * 55.00374 * 18 14 13 34 34 H 1.08996 * 110.90766 * 86.28222 * 21 19 18 35 35 H 1.09001 * 110.94010 * 322.68241 * 21 19 18 36 36 H 1.09004 * 110.48564 * 262.20686 * 22 21 19 37 37 H 1.08989 * 110.60109 * 139.61789 * 22 21 19 38 38 H 1.08998 * 109.88273 * 242.60534 * 23 22 21 39 39 H 1.08998 * 110.00322 * 121.52715 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9846 -0.0009 11 6 5.5731 -3.2325 -0.0008 12 8 6.3441 -2.2963 -0.0014 13 7 6.0457 -4.4947 -0.0011 14 6 7.4907 -4.7358 -0.0016 15 1 7.9878 -3.9653 0.5878 16 6 8.0141 -4.6955 -1.4387 17 8 7.4500 -5.7781 -2.1816 18 6 7.7789 -6.1093 0.6079 19 6 7.3689 -6.1094 2.0819 20 1 7.8803 -5.3137 2.6236 21 6 7.6620 -7.4866 2.7298 22 6 6.6572 -7.5114 3.9074 23 6 5.5838 -6.4799 3.5097 24 8 5.9373 -5.9740 2.2115 25 1 -0.4849 0.8400 0.0004 26 1 3.6434 -3.4318 -0.8906 27 1 3.6440 -3.4314 0.8893 28 1 5.4292 -5.2435 -0.0011 29 1 7.7310 -3.7504 -1.9021 30 1 9.1003 -4.7861 -1.4325 31 1 7.7382 -5.8145 -3.1039 32 1 8.8439 -6.3266 0.5269 33 1 7.2111 -6.8705 0.0728 34 1 8.6884 -7.5350 3.0932 35 1 7.4605 -8.2973 2.0296 36 1 7.1480 -7.2134 4.8339 37 1 6.2143 -8.5017 4.0128 38 1 5.5670 -5.6647 4.2331 39 1 4.6050 -6.9577 3.4673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923745045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:37 Heat of formation + Delta-G solvation = -143.499434 kcal Electronic energy + Delta-G solvation = -21284.765908 eV Core-core repulsion = 17932.309681 eV Total energy + Delta-G solvation = -3352.456228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.95969 -38.99750 -37.11349 -34.73505 -32.45524 -32.36988 -31.78125 -29.71973 -28.05013 -25.76481 -25.53689 -22.40377 -21.39361 -21.08455 -20.13474 -17.81033 -17.54554 -16.92874 -16.18523 -16.14933 -15.68470 -15.28503 -15.04720 -14.88530 -14.26313 -14.04926 -13.76471 -13.54005 -13.10781 -12.97875 -12.73015 -12.54104 -12.20063 -11.97103 -11.84517 -11.56995 -11.31101 -11.19450 -10.95804 -10.92921 -10.82259 -10.50611 -10.11916 -9.79176 -9.75618 -9.31833 -8.94216 -8.70693 -8.40563 -6.82512 -6.22534 -3.92758 2.89331 3.16701 3.36955 3.42576 3.55508 3.66633 3.83971 4.21169 4.25758 4.36514 4.39152 4.67645 4.76179 4.87243 4.92560 4.97122 5.14259 5.16582 5.23636 5.27296 5.34982 5.45574 5.46762 5.52279 5.64233 5.68324 5.74199 5.75979 5.84239 5.94458 6.06939 6.19874 6.78769 6.82293 7.49179 7.92443 8.01083 8.49214 8.71604 9.24028 10.86931 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019171 B = 0.004135 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.178797 B = 6769.699435 C = 7686.788355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.519 4.519 8 H 0.088 0.912 9 S -0.145 6.145 10 C -0.120 4.120 11 C 0.534 3.466 12 O -0.534 6.534 13 N -0.708 5.708 14 C 0.154 3.846 15 H 0.097 0.903 16 C 0.062 3.938 17 O -0.568 6.568 18 C -0.115 4.115 19 C 0.075 3.925 20 H 0.069 0.931 21 C -0.150 4.150 22 C -0.156 4.156 23 C 0.045 3.955 24 O -0.363 6.363 25 H 0.270 0.730 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.405 0.595 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.376 0.624 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.055 -17.528 3.180 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.666 4.666 8 H 0.106 0.894 9 S 0.081 5.919 10 C -0.271 4.271 11 C 0.320 3.680 12 O -0.410 6.410 13 N -0.362 5.362 14 C 0.048 3.952 15 H 0.115 0.885 16 C -0.017 4.017 17 O -0.373 6.373 18 C -0.153 4.153 19 C 0.018 3.982 20 H 0.087 0.913 21 C -0.187 4.187 22 C -0.194 4.194 23 C -0.032 4.032 24 O -0.282 6.282 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.241 0.759 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.223 0.777 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 18.729 -15.906 3.615 24.837 hybrid contribution -0.695 -0.633 -0.302 0.987 sum 18.035 -16.539 3.313 24.693 Atomic orbital electron populations 1.69946 1.05918 1.27645 1.48441 1.24711 0.94428 0.98907 0.93280 0.86729 0.81917 0.83305 0.79863 1.19278 1.20041 1.15932 1.22347 0.88438 0.97500 1.58334 0.89438 1.84698 1.09077 1.00704 1.97422 1.23239 0.94453 1.03668 1.05713 1.20199 0.90434 0.82442 0.74875 1.90661 1.58763 1.42455 1.49116 1.45782 1.06543 1.07974 1.75876 1.20901 0.83063 0.97346 0.93905 0.88546 1.22688 0.96071 0.90024 0.92964 1.86463 1.73211 1.50892 1.26757 1.21842 1.02180 0.97740 0.93527 1.23178 0.82909 0.95888 0.96251 0.91308 1.23166 0.99728 0.98241 0.97610 1.22926 0.97083 1.00461 0.98906 1.23131 0.98506 0.95776 0.85752 1.88937 1.21487 1.84085 1.33718 0.92039 0.88780 0.88492 0.75911 0.92657 0.93216 0.77740 0.89410 0.89494 0.90431 0.90376 0.90896 0.90634 0.92414 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.20 13.97 55.49 0.78 -26.42 16 2 C 0.09 2.84 5.50 -17.43 -0.10 2.75 16 3 Si 0.86 22.28 27.74 -169.99 -4.71 17.57 16 4 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.24 -6.12 6.74 56.52 0.38 -5.74 16 7 C -0.52 -15.41 10.04 30.94 0.31 -15.10 16 8 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 9 S -0.15 -3.83 18.55 -107.50 -1.99 -5.82 16 10 C -0.12 -2.51 6.16 36.00 0.22 -2.29 16 11 C 0.53 10.19 7.81 -10.99 -0.09 10.11 16 12 O -0.53 -11.85 15.53 5.56 0.09 -11.76 16 13 N -0.71 -10.35 3.89 -53.81 -0.21 -10.56 16 14 C 0.15 1.84 2.37 -67.93 -0.16 1.68 16 15 H 0.10 1.27 7.58 -51.93 -0.39 0.88 16 16 C 0.06 0.67 6.85 37.16 0.25 0.92 16 17 O -0.57 -5.80 12.83 -35.23 -0.45 -6.25 16 18 C -0.12 -1.05 4.33 -26.73 -0.12 -1.17 16 19 C 0.08 0.72 3.32 -25.68 -0.09 0.64 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 21 C -0.15 -1.09 6.59 -24.72 -0.16 -1.25 16 22 C -0.16 -1.15 7.01 -25.20 -0.18 -1.33 16 23 C 0.05 0.44 7.70 37.73 0.29 0.73 16 24 O -0.36 -4.36 9.19 -35.23 -0.32 -4.68 16 25 H 0.27 7.71 8.31 -40.82 -0.34 7.38 16 26 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 27 H 0.10 1.95 8.14 -51.92 -0.42 1.53 16 28 H 0.41 5.56 7.75 -40.82 -0.32 5.24 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.38 2.33 9.12 45.56 0.42 2.75 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.86 7.73 -51.93 -0.40 0.46 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.55 8.06 -51.93 -0.42 0.14 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.49 8.14 -51.94 -0.42 0.06 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -35.42 336.45 -6.91 -42.33 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.34 Total: 4.84 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 0.19 Total: -4.31 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.57 Total: -36.98 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.69 Total: -22.69 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -1.99 Total: -5.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.42 -6.91 -42.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923745045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.167 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds