Wall clock time and date at job start Tue Mar 31 2020 02:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47333 * 2 1 4 4 C 1.50695 * 109.47154 * 120.00469 * 2 1 3 5 5 H 1.08002 * 119.99975 * 119.99327 * 4 2 1 6 6 C 1.37879 * 120.00403 * 299.99993 * 4 2 1 7 7 N 1.31521 * 119.99225 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00266 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47074 * 59.99661 * 8 6 4 10 10 H 1.48500 * 109.46814 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47158 * 299.99309 * 8 6 4 12 12 N 1.46505 * 109.46669 * 240.00351 * 2 1 3 13 13 C 1.34771 * 120.00033 * 85.00118 * 12 2 1 14 14 O 1.21498 * 119.99866 * 359.97438 * 13 12 2 15 15 C 1.48284 * 120.00135 * 180.02562 * 13 12 2 16 16 N 1.31627 * 126.53016 * 180.02562 * 15 13 12 17 17 C 1.34838 * 105.57638 * 179.97438 * 16 15 13 18 18 C 1.48494 * 126.32071 * 179.97438 * 17 16 15 19 19 C 1.39388 * 120.09762 * 179.97438 * 18 17 16 20 20 N 1.32024 * 119.87760 * 179.76222 * 19 18 17 21 21 C 1.32192 * 120.07747 * 0.51534 * 20 19 18 22 22 C 1.38477 * 120.19845 * 359.48225 * 21 20 19 23 23 N 1.31988 * 120.12357 * 0.26043 * 22 21 20 24 24 N 1.30869 * 107.35727 * 0.24114 * 17 16 15 25 25 O 1.21285 * 110.24265 * 359.57381 * 24 17 16 26 26 H 1.09005 * 109.46976 * 299.99994 * 1 2 3 27 27 H 1.09000 * 109.47349 * 59.99255 * 1 2 3 28 28 H 1.08993 * 109.47621 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99503 * 179.97438 * 7 6 4 30 30 H 0.97003 * 119.99584 * 265.00246 * 12 2 1 31 31 H 1.07997 * 120.06395 * 0.02562 * 19 18 17 32 32 H 1.08002 * 119.90180 * 179.76694 * 21 20 19 33 33 H 1.08001 * 119.93453 * 180.28412 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3226 -1.1199 4.0078 9 1 3.8076 -1.1194 4.0075 10 1 1.8280 -0.4196 5.2203 11 1 1.8281 -2.5201 4.0080 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8576 1.1606 -2.4117 15 6 2.6406 -0.7173 -3.5681 16 7 2.8152 -0.1893 -4.7612 17 6 3.2742 -1.1919 -5.5372 18 6 3.6243 -1.0998 -6.9773 19 6 4.0902 -2.2243 -7.6567 20 7 4.3958 -2.1387 -8.9382 21 6 4.2700 -0.9864 -9.5737 22 6 3.8075 0.1327 -8.9020 23 7 3.4949 0.0549 -7.6220 24 7 3.3487 -2.2625 -4.7882 25 8 2.9950 -2.0083 -3.6563 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7090 1.1611 3.4844 30 1 2.2489 -1.6318 -1.1527 31 1 4.1969 -3.1648 -7.1368 32 1 4.5243 -0.9187 -10.6212 33 1 3.7020 1.0709 -9.4265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001145058581.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:57 Heat of formation + Delta-G solvation = 68.849147 kcal Electronic energy + Delta-G solvation = -21347.822788 eV Core-core repulsion = 17797.883142 eV Total energy + Delta-G solvation = -3549.939646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.096 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.02204 -42.19274 -40.87862 -37.60054 -36.84840 -35.45275 -34.73545 -34.25416 -32.38897 -30.99686 -27.36797 -27.11246 -26.82150 -25.51342 -24.37586 -23.15500 -21.74347 -20.45917 -19.65677 -18.95890 -18.37996 -17.99844 -17.59631 -17.42897 -17.28969 -16.43694 -16.17195 -16.02055 -15.34364 -15.14369 -14.49594 -14.29365 -13.86586 -13.79507 -13.56421 -13.05522 -12.91420 -12.82050 -12.73916 -12.62982 -12.53527 -12.26941 -12.16099 -11.84459 -11.59726 -11.13771 -10.60713 -10.38746 -10.34951 -10.06623 -8.16692 -6.33872 -1.02357 -0.59712 -0.11669 0.82415 0.88338 1.50681 1.51815 1.58840 1.63129 1.71304 1.96002 2.43888 2.55513 2.76588 3.12158 3.15293 3.21673 3.42519 3.52893 3.89463 4.01767 4.23952 4.37546 4.41437 4.74219 4.90371 5.03821 5.16702 5.24300 5.45984 5.63945 5.80320 6.03148 6.05719 6.35044 6.52011 6.64669 6.69366 6.98330 7.37989 8.89478 Molecular weight = 289.10amu Principal moments of inertia in cm(-1) A = 0.043147 B = 0.002944 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.795307 B = 9508.018200 C = 9929.664252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.270 3.730 3 H 0.017 0.983 4 C -0.549 4.549 5 H 0.080 0.920 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.289 1.289 11 H -0.264 1.264 12 N -0.666 5.666 13 C 0.606 3.394 14 O -0.531 6.531 15 C 0.165 3.835 16 N -0.423 5.423 17 C 0.210 3.790 18 C 0.117 3.883 19 C 0.096 3.904 20 N -0.449 5.449 21 C 0.087 3.913 22 C 0.064 3.936 23 N -0.438 5.438 24 N -0.346 5.346 25 O 0.123 5.877 26 H 0.073 0.927 27 H 0.019 0.981 28 H 0.047 0.953 29 H 0.267 0.733 30 H 0.416 0.584 31 H 0.187 0.813 32 H 0.227 0.773 33 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 -7.265 -20.882 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.034 0.966 4 C -0.587 4.587 5 H 0.098 0.902 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.316 5.316 13 C 0.385 3.615 14 O -0.406 6.406 15 C -0.059 4.059 16 N -0.158 5.158 17 C -0.061 4.061 18 C -0.021 4.021 19 C -0.064 4.064 20 N -0.163 5.163 21 C -0.075 4.075 22 C -0.099 4.099 23 N -0.154 5.154 24 N -0.047 5.047 25 O 0.054 5.946 26 H 0.092 0.908 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.253 0.747 31 H 0.204 0.796 32 H 0.243 0.757 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.098 -6.772 -21.300 23.167 hybrid contribution 0.095 -0.297 1.239 1.278 sum 6.193 -7.069 -20.060 22.153 Atomic orbital electron populations 1.21972 0.97320 1.00279 1.00343 1.18687 0.91780 0.92534 0.80145 0.96554 1.21467 1.33082 1.13962 0.90239 0.90199 1.25724 0.94771 0.95511 1.02132 1.70026 1.36656 1.23677 1.24870 0.85399 0.78630 0.78740 0.77603 1.19654 1.21422 1.18841 1.46258 1.62369 1.14860 1.08162 1.16272 0.79477 0.85313 0.80476 1.90863 1.51150 1.15510 1.83092 1.28490 0.98791 0.82193 0.96393 1.72195 1.14490 1.29082 1.00039 1.23662 1.01239 0.84509 0.96710 1.18790 1.02308 0.92954 0.88067 1.23787 0.92752 0.98545 0.91299 1.68717 1.12674 1.27530 1.07353 1.24885 0.91434 0.87550 1.03659 1.24659 0.93846 1.02773 0.88619 1.68240 1.11188 1.24813 1.11203 1.74819 1.16970 1.21909 0.90975 1.85454 1.57516 1.27556 1.24082 0.90816 0.96240 0.93408 0.92395 0.74661 0.79589 0.75658 0.76494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.60 9.26 71.98 0.67 -5.93 16 2 C 0.27 12.99 2.56 44.24 0.11 13.10 16 3 H 0.02 0.93 7.58 -2.39 -0.02 0.91 16 4 C -0.55 -27.09 8.73 25.60 0.22 -26.87 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.02 0.99 5.30 84.65 0.45 1.44 16 7 N -0.91 -49.84 11.32 21.45 0.24 -49.59 16 8 Si 0.97 40.04 29.54 68.60 2.03 42.06 16 9 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 12 N -0.67 -25.80 5.07 -448.56 -2.27 -28.08 16 13 C 0.61 24.14 7.81 86.92 0.68 24.82 16 14 O -0.53 -25.54 16.76 -3.71 -0.06 -25.60 16 15 C 0.17 5.65 8.23 87.49 0.72 6.37 16 16 N -0.42 -15.23 11.57 -302.61 -3.50 -18.73 16 17 C 0.21 6.38 7.91 137.41 1.09 7.46 16 18 C 0.12 2.98 6.76 42.00 0.28 3.26 16 19 C 0.10 1.90 10.87 84.94 0.92 2.83 16 20 N -0.45 -7.50 10.49 -194.37 -2.04 -9.53 16 21 C 0.09 0.88 11.22 84.70 0.95 1.83 16 22 C 0.06 0.85 11.22 84.73 0.95 1.80 16 23 N -0.44 -10.66 10.44 -184.20 -1.92 -12.59 16 24 N -0.35 -9.69 11.85 -58.07 -0.69 -10.37 16 25 O 0.12 3.52 11.13 69.98 0.78 4.30 16 26 H 0.07 3.82 6.07 -2.38 -0.01 3.81 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.42 13.22 8.36 -92.71 -0.78 12.45 16 31 H 0.19 3.16 7.87 -2.91 -0.02 3.13 16 32 H 0.23 0.01 8.06 -2.91 -0.02 -0.01 16 33 H 0.22 1.01 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -68.33 307.66 0.02 -68.31 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.41 Total: 9.71 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: 7.05 Total: 30.11 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -10.18 Total: -128.89 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.72 Total: -21.30 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Total: -68.33 0.02 -68.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001145058581.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.157 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds