Wall clock time and date at job start Tue Mar 31 2020 03:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99640 * 2 1 4 4 H 1.48497 * 109.47060 * 273.79783 * 3 2 1 5 5 H 1.48501 * 109.47415 * 33.80124 * 3 2 1 6 6 H 1.48509 * 109.46941 * 153.79950 * 3 2 1 7 7 C 1.37870 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00437 * 357.21108 * 7 2 1 9 9 C 1.50699 * 120.00296 * 177.21181 * 7 2 1 10 10 O 1.42902 * 110.78505 * 61.84086 * 9 7 2 11 11 C 1.54595 * 110.72833 * 185.09127 * 9 7 2 12 12 C 1.53989 * 105.14296 * 140.31275 * 11 9 7 13 13 N 1.47908 * 107.05886 * 1.22672 * 12 11 9 14 14 C 1.46893 * 111.00111 * 214.15406 * 13 12 11 15 15 C 1.52999 * 109.47306 * 175.31962 * 14 13 12 16 16 H 1.09008 * 109.64090 * 304.69754 * 15 14 13 17 17 C 1.53871 * 109.65109 * 184.26729 * 15 14 13 18 18 C 1.55042 * 106.62714 * 192.96588 * 17 15 14 19 19 S 1.83288 * 102.56524 * 42.43180 * 18 17 15 20 20 O 1.42104 * 109.35491 * 90.18795 * 19 18 17 21 21 O 1.42108 * 109.35556 * 223.25441 * 19 18 17 22 22 C 1.54165 * 109.64799 * 64.98916 * 15 14 13 23 23 C 1.48532 * 105.81651 * 334.66896 * 13 12 11 24 24 H 0.96998 * 120.00385 * 359.97438 * 1 2 3 25 25 H 0.96696 * 114.00040 * 61.79962 * 10 9 7 26 26 H 1.09004 * 110.30430 * 21.39708 * 11 9 7 27 27 H 1.09004 * 110.39419 * 259.27515 * 11 9 7 28 28 H 1.08997 * 109.92420 * 241.87519 * 12 11 9 29 29 H 1.09000 * 109.91938 * 120.58093 * 12 11 9 30 30 H 1.09004 * 109.47418 * 55.32384 * 14 13 12 31 31 H 1.08997 * 109.47616 * 295.31987 * 14 13 12 32 32 H 1.09002 * 110.02997 * 312.25547 * 17 15 14 33 33 H 1.09003 * 110.03106 * 73.62541 * 17 15 14 34 34 H 1.09005 * 110.79613 * 160.70098 * 18 17 15 35 35 H 1.08998 * 110.79034 * 284.16246 * 18 17 15 36 36 H 1.09000 * 110.31823 * 266.66883 * 22 15 14 37 37 H 1.09000 * 110.31889 * 28.85892 * 22 15 14 38 38 H 1.09005 * 110.66765 * 157.63934 * 23 13 12 39 39 H 1.08999 * 110.67201 * 280.76983 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4161 2.0928 -1.3970 5 1 1.4889 2.6282 0.7789 6 1 3.5845 1.4184 0.6182 7 6 2.0045 -1.1940 0.0005 8 1 1.4656 -2.1288 0.0465 9 6 3.5102 -1.1947 -0.0629 10 8 4.0661 -0.5355 1.0765 11 6 4.0522 -2.6379 -0.1785 12 6 5.2235 -2.5492 -1.1741 13 7 5.3502 -1.1296 -1.5697 14 6 5.7810 -1.0095 -2.9689 15 6 5.7881 0.4655 -3.3755 16 1 4.8063 0.9014 -3.1901 17 6 6.1352 0.5888 -4.8694 18 6 6.4495 2.0845 -5.1299 19 16 7.4624 2.5389 -3.6716 20 8 8.8347 2.3107 -3.9616 21 8 7.0435 3.8061 -3.1835 22 6 6.8517 1.2238 -2.5566 23 6 4.0040 -0.5332 -1.3741 24 1 -0.4850 0.8400 0.0004 25 1 3.8505 -0.9578 1.9193 26 1 3.2786 -3.3029 -0.5627 27 1 4.4054 -2.9898 0.7909 28 1 5.0129 -3.1615 -2.0509 29 1 6.1437 -2.8849 -0.6959 30 1 5.0921 -1.5596 -3.6098 31 1 6.7846 -1.4208 -3.0767 32 1 7.0077 -0.0219 -5.1017 33 1 5.2869 0.2736 -5.4771 34 1 7.0207 2.2053 -6.0505 35 1 5.5324 2.6726 -5.1625 36 1 6.4020 1.6617 -1.6655 37 1 7.6656 0.5535 -2.2805 38 1 4.0757 0.5480 -1.2562 39 1 3.3459 -0.7878 -2.2050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195509413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:48 Heat of formation + Delta-G solvation = -136.260430 kcal Electronic energy + Delta-G solvation = -22419.282703 eV Core-core repulsion = 19067.140382 eV Total energy + Delta-G solvation = -3352.142321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.47040 -38.20614 -38.00729 -37.04100 -36.03606 -34.48847 -32.32846 -30.50481 -29.89967 -27.80155 -26.30268 -24.33982 -22.32548 -21.50490 -20.86911 -19.79535 -19.33594 -17.87221 -17.54993 -17.17911 -16.88874 -16.63340 -16.07348 -15.77964 -15.46626 -15.15254 -14.89520 -14.68216 -14.47251 -14.01189 -13.84890 -13.43064 -13.27659 -13.21928 -13.09418 -13.04542 -12.86983 -12.71591 -12.52133 -12.33028 -12.14086 -11.90702 -11.69021 -11.56153 -11.47602 -11.09068 -10.82087 -10.81615 -10.10811 -9.24451 -8.38248 -6.51043 -0.86352 1.30020 1.42247 1.63559 1.69982 2.37081 2.66737 2.95784 3.02228 3.13614 3.46942 3.61022 3.68363 3.79726 3.94571 4.04884 4.10424 4.17036 4.37790 4.44061 4.55204 4.61584 4.70334 4.74692 4.78150 4.83334 4.91790 4.97895 5.11614 5.14736 5.21517 5.25797 5.46416 5.51257 5.95111 6.10952 6.24717 6.62024 7.20624 7.37824 8.75933 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.005800 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.664977 B = 4826.645651 C = 5501.832022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.038 3.962 3 Si 0.913 3.087 4 H -0.276 1.276 5 H -0.308 1.308 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.039 0.961 9 C 0.213 3.787 10 O -0.572 6.572 11 C -0.144 4.144 12 C 0.046 3.954 13 N -0.519 5.519 14 C 0.051 3.949 15 C -0.093 4.093 16 H 0.076 0.924 17 C -0.111 4.111 18 C -0.563 4.563 19 S 2.379 3.621 20 O -0.973 6.973 21 O -0.993 6.993 22 C -0.564 4.564 23 C 0.051 3.949 24 H 0.266 0.734 25 H 0.369 0.631 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.155 0.845 38 H 0.061 0.939 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.731 -1.639 -11.218 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.162 4.162 3 Si 0.739 3.261 4 H -0.203 1.203 5 H -0.237 1.237 6 H -0.123 1.123 7 C -0.586 4.586 8 H 0.057 0.943 9 C 0.173 3.827 10 O -0.379 6.379 11 C -0.182 4.182 12 C -0.081 4.081 13 N -0.243 5.243 14 C -0.078 4.078 15 C -0.114 4.114 16 H 0.094 0.906 17 C -0.150 4.150 18 C -0.696 4.696 19 S 2.568 3.432 20 O -0.970 6.970 21 O -0.990 6.990 22 C -0.695 4.695 23 C -0.077 4.077 24 H 0.075 0.925 25 H 0.217 0.783 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.143 0.857 37 H 0.173 0.827 38 H 0.079 0.921 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.950 -0.134 -11.212 19.497 hybrid contribution -2.038 -0.458 0.259 2.105 sum 13.913 -0.592 -10.952 17.716 Atomic orbital electron populations 1.70055 1.08330 1.28198 1.51062 1.25693 0.95007 1.02830 0.92654 0.86502 0.82566 0.78434 0.78576 1.20266 1.23652 1.12278 1.21691 0.91637 0.93074 1.52151 0.94277 1.19846 0.89173 0.89286 0.84417 1.86546 1.77452 1.57017 1.16900 1.22944 0.97252 0.97766 1.00239 1.22795 0.98612 0.88726 0.97966 1.64807 1.24536 1.13710 1.21281 1.22467 1.02637 0.94559 0.88134 1.21759 0.98389 0.96950 0.94259 0.90556 1.22331 1.06557 0.92586 0.93513 1.30458 1.15479 1.06067 1.17564 1.09109 0.76523 0.76630 0.80889 1.93552 1.32172 1.86844 1.84445 1.93546 1.84166 1.40915 1.80358 1.30381 1.10039 1.16282 1.12796 1.23280 0.89090 0.98764 0.96564 0.92528 0.78310 0.92402 0.90721 0.92728 0.89171 0.93057 0.87580 0.86779 0.86553 0.81687 0.83503 0.85737 0.82739 0.92115 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.00 13.96 21.44 0.30 -56.71 16 2 C 0.04 2.15 5.45 84.65 0.46 2.62 16 3 Si 0.91 44.13 24.19 68.60 1.66 45.79 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.31 -15.34 7.11 99.48 0.71 -14.64 16 6 H -0.20 -9.32 5.14 99.48 0.51 -8.81 16 7 C -0.55 -29.38 8.82 25.60 0.23 -29.15 16 8 H 0.04 2.32 7.84 -2.91 -0.02 2.30 16 9 C 0.21 9.16 0.78 -10.33 -0.01 9.15 16 10 O -0.57 -24.29 10.01 -148.98 -1.49 -25.78 16 11 C -0.14 -5.04 6.25 31.47 0.20 -4.85 16 12 C 0.05 1.31 6.70 86.44 0.58 1.89 16 13 N -0.52 -15.66 5.09 -883.02 -4.50 -20.16 16 14 C 0.05 1.08 4.14 86.30 0.36 1.44 16 15 C -0.09 -1.86 2.40 -10.11 -0.02 -1.89 16 16 H 0.08 1.84 6.66 -2.38 -0.02 1.82 16 17 C -0.11 -1.31 5.80 31.59 0.18 -1.13 16 18 C -0.56 -6.90 7.31 72.68 0.53 -6.37 16 19 S 2.38 49.95 6.10 -56.49 -0.34 49.61 16 20 O -0.97 -25.46 18.15 -127.47 -2.31 -27.77 16 21 O -0.99 -30.36 18.15 -127.47 -2.31 -32.68 16 22 C -0.56 -11.85 6.50 72.38 0.47 -11.38 16 23 C 0.05 1.97 3.34 86.65 0.29 2.26 16 24 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.37 13.67 9.10 -74.06 -0.67 13.00 16 26 H 0.06 2.13 7.70 -2.38 -0.02 2.12 16 27 H 0.07 2.40 8.08 -2.39 -0.02 2.38 16 28 H 0.05 1.34 7.66 -2.39 -0.02 1.32 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 1.03 7.96 -2.39 -0.02 1.01 16 31 H 0.11 1.70 8.04 -2.39 -0.02 1.68 16 32 H 0.11 0.85 8.11 -2.39 -0.02 0.83 16 33 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.17 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.15 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.15 2.78 7.82 -2.39 -0.02 2.76 16 38 H 0.06 2.49 4.50 -2.38 -0.01 2.48 16 39 H 0.05 1.85 7.92 -2.39 -0.02 1.83 16 Total: -1.00 -77.81 312.88 -5.56 -83.37 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.18 Total: 21.75 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 3.26 Total: -37.42 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -4.20 Total: -76.86 kcal Atomic # 8 Polarization: -80.11 SS G_CDS: -6.12 Total: -86.23 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.66 Total: 45.79 kcal Atomic # 16 Polarization: 49.95 SS G_CDS: -0.34 Total: 49.61 kcal Total: -77.81 -5.56 -83.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195509413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.891 kcal (2) G-P(sol) polarization free energy of solvation -77.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds