Wall clock time and date at job start Tue Mar 31 2020 03:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 120.00453 * 2 1 4 4 N 1.46895 * 109.47063 * 125.49389 * 3 2 1 5 5 C 1.46899 * 110.99998 * 49.69956 * 4 3 2 6 6 C 1.52999 * 109.47375 * 77.29490 * 5 4 3 7 7 H 1.08999 * 109.46907 * 53.55298 * 6 5 4 8 8 O 1.42904 * 109.47041 * 293.55314 * 6 5 4 9 9 C 1.50704 * 109.47053 * 173.55510 * 6 5 4 10 10 H 1.07995 * 119.99960 * 359.97438 * 9 6 5 11 11 C 1.37880 * 119.99739 * 180.02562 * 9 6 5 12 12 N 1.31509 * 119.99973 * 359.97438 * 11 9 6 13 13 Si 1.86800 * 119.99627 * 179.72364 * 11 9 6 14 14 H 1.48499 * 109.47306 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47043 * 119.99703 * 13 11 9 16 16 H 1.48499 * 109.47130 * 239.99379 * 13 11 9 17 17 C 1.46900 * 111.00386 * 285.73794 * 4 3 2 18 18 H 1.09001 * 110.01520 * 197.31969 * 17 4 3 19 19 C 1.53881 * 110.02422 * 75.94387 * 17 4 3 20 20 C 1.54188 * 108.68954 * 193.57423 * 19 17 4 21 21 S 1.82920 * 105.10903 * 27.83359 * 20 19 17 22 22 O 1.42100 * 109.35413 * 244.51489 * 21 20 19 23 23 O 1.42100 * 109.47376 * 111.34988 * 21 20 19 24 24 C 1.55040 * 110.03053 * 318.70230 * 17 4 3 25 25 H 1.08001 * 120.00013 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99473 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99473 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46916 * 5.49520 * 3 2 1 29 29 H 1.08996 * 109.47075 * 245.49983 * 3 2 1 30 30 H 1.08999 * 109.46922 * 317.29421 * 5 4 3 31 31 H 1.09000 * 109.47188 * 197.29422 * 5 4 3 32 32 H 0.96701 * 113.99850 * 299.99676 * 8 6 5 33 33 H 0.97000 * 119.99828 * 180.02562 * 12 11 9 34 34 H 1.08998 * 109.64464 * 313.37944 * 19 17 4 35 35 H 1.09001 * 109.64609 * 73.67326 * 19 17 4 36 36 H 1.08994 * 110.27662 * 268.93999 * 20 19 17 37 37 H 1.09001 * 110.42738 * 146.80363 * 20 19 17 38 38 H 1.08999 * 110.79162 * 279.99555 * 24 17 4 39 39 H 1.09010 * 110.78908 * 43.26300 * 24 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 7 3.0049 1.3269 1.1276 5 6 3.8101 0.0989 1.1651 6 6 4.9065 0.1751 0.1007 7 1 5.4754 1.0957 0.2305 8 8 4.3110 0.1622 -1.1983 9 6 5.8278 -1.0091 0.2428 10 1 5.6493 -1.7424 1.0153 11 6 6.8990 -1.1556 -0.6127 12 7 7.1165 -0.2624 -1.5530 13 14 8.0454 -2.6194 -0.4317 14 1 7.5895 -3.4684 0.6982 15 1 8.0339 -3.4151 -1.6854 16 1 9.4243 -2.1380 -0.1636 17 6 2.2985 1.5325 2.3991 18 1 3.0016 1.8495 3.1694 19 6 1.5974 0.2318 2.8287 20 6 0.6002 0.5580 3.9586 21 16 0.1108 2.2976 3.6752 22 8 0.5548 3.0950 4.7643 23 8 -1.2505 2.3469 3.2707 24 6 1.1874 2.5993 2.2229 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3595 2.1312 0.0984 29 1 2.6144 1.4065 -0.9351 30 1 3.1704 -0.7612 0.9669 31 1 4.2661 -0.0067 2.1495 32 1 3.7883 -0.6300 -1.3834 33 1 7.8700 -0.3657 -2.1552 34 1 1.0621 -0.1935 1.9797 35 1 2.3382 -0.4827 3.1875 36 1 1.0831 0.4541 4.9302 37 1 -0.2706 -0.0949 3.8977 38 1 1.6076 3.6045 2.2549 39 1 0.6414 2.4394 1.2931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351150478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:13 Heat of formation + Delta-G solvation = -70.734016 kcal Electronic energy + Delta-G solvation = -22396.589801 eV Core-core repulsion = 19047.288919 eV Total energy + Delta-G solvation = -3349.300882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.60674 -37.14081 -36.14968 -35.76041 -34.02189 -32.46660 -32.15669 -30.20517 -28.06126 -26.34955 -24.63107 -23.51570 -21.17458 -20.53724 -19.04601 -18.78564 -17.40993 -16.95843 -16.72988 -15.98453 -15.55101 -14.96186 -14.69264 -14.61706 -14.35739 -14.26607 -13.85150 -13.41600 -12.99783 -12.75170 -12.53666 -12.28268 -12.20310 -12.08736 -12.00066 -11.62771 -11.52909 -11.17086 -11.12501 -10.99893 -10.81351 -10.62749 -10.48379 -10.35025 -10.09265 -9.25170 -9.00028 -8.63137 -8.29116 -7.74808 -6.06820 -4.25630 -0.07037 2.27311 2.39029 3.21870 3.30903 3.32712 3.46418 3.82336 4.17555 4.29387 4.39386 4.52224 4.63735 4.67969 4.85320 5.05532 5.19494 5.21146 5.36717 5.40562 5.56494 5.61660 5.77626 5.88568 5.90940 5.95696 6.20219 6.30019 6.43208 6.66193 6.72413 6.81096 7.28407 7.41594 7.69946 7.86991 8.12204 8.77813 9.31116 9.51848 10.97149 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.004312 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.724793 B = 6491.981823 C = 6789.407888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.056 3.944 4 N -0.501 5.501 5 C 0.020 3.980 6 C 0.238 3.762 7 H 0.064 0.936 8 O -0.559 6.559 9 C -0.574 4.574 10 H 0.054 0.946 11 C 0.081 3.919 12 N -0.856 5.856 13 Si 0.887 3.113 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.086 3.914 18 H 0.104 0.896 19 C -0.169 4.169 20 C -0.584 4.584 21 S 2.382 3.618 22 O -0.942 6.942 23 O -0.944 6.944 24 C -0.595 4.595 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.339 0.661 33 H 0.260 0.740 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.107 1.369 7.080 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.188 4.188 3 C -0.071 4.071 4 N -0.222 5.222 5 C -0.107 4.107 6 C 0.180 3.820 7 H 0.082 0.918 8 O -0.361 6.361 9 C -0.613 4.613 10 H 0.072 0.928 11 C -0.125 4.125 12 N -0.491 5.491 13 Si 0.715 3.285 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.025 4.025 18 H 0.122 0.878 19 C -0.208 4.208 20 C -0.715 4.715 21 S 2.566 3.434 22 O -0.939 6.939 23 O -0.941 6.941 24 C -0.724 4.724 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.136 0.864 28 H 0.096 0.904 29 H 0.137 0.863 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.182 0.818 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.981 3.050 7.326 15.214 hybrid contribution 0.451 -2.734 -0.029 2.771 sum -12.530 0.316 7.297 14.504 Atomic orbital electron populations 1.23856 0.95896 1.01831 1.03365 1.23861 0.96372 1.01492 0.97113 1.21947 0.94658 0.93191 0.97328 1.62652 1.21011 1.38860 0.99720 1.23328 0.96319 0.88265 1.02751 1.19382 0.87164 0.97590 0.77891 0.91797 1.86587 1.69588 1.42953 1.37005 1.21634 1.12336 1.09881 1.17439 0.92752 1.25006 0.96912 0.95840 0.94751 1.70082 1.28223 1.33793 1.17023 0.86647 0.80978 0.82891 0.78011 1.19799 1.20926 1.20855 1.22542 0.93564 0.90619 0.95768 0.87828 1.23207 0.98849 1.01055 0.97735 1.30380 1.09796 1.23354 1.07937 1.09233 0.76691 0.79283 0.78207 1.93610 1.83093 1.66331 1.50831 1.93598 1.31155 1.86291 1.83025 1.31056 1.13004 1.08689 1.19674 0.88675 0.88651 0.86403 0.90443 0.86317 0.94161 0.91300 0.81794 0.93004 0.87853 0.88749 0.84771 0.84807 0.83734 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.27 13.01 29.01 0.38 -1.90 16 2 C -0.17 -2.10 6.05 -36.03 -0.22 -2.31 16 3 C 0.06 0.77 4.93 -4.98 -0.02 0.75 16 4 N -0.50 -7.57 4.82 -226.25 -1.09 -8.66 16 5 C 0.02 0.35 3.38 -3.82 -0.01 0.34 16 6 C 0.24 5.47 3.05 -27.88 -0.08 5.39 16 7 H 0.06 1.70 8.14 -51.93 -0.42 1.27 16 8 O -0.56 -12.84 10.14 -35.23 -0.36 -13.20 16 9 C -0.57 -14.70 8.76 -34.44 -0.30 -15.01 16 10 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 11 C 0.08 2.18 5.40 -17.82 -0.10 2.08 16 12 N -0.86 -24.33 12.84 55.43 0.71 -23.61 16 13 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.09 1.02 2.85 -66.18 -0.19 0.83 16 18 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 19 C -0.17 -1.76 4.59 -25.65 -0.12 -1.88 16 20 C -0.58 -4.98 7.26 37.78 0.27 -4.71 16 21 S 2.38 24.84 6.10 -107.50 -0.66 24.18 16 22 O -0.94 -12.90 18.15 -57.73 -1.05 -13.95 16 23 O -0.94 -12.60 18.15 -57.73 -1.05 -13.64 16 24 C -0.59 -5.98 6.30 38.24 0.24 -5.74 16 25 H 0.09 0.92 8.06 -52.49 -0.42 0.50 16 26 H 0.10 0.95 7.53 -52.49 -0.40 0.55 16 27 H 0.12 1.57 6.23 -52.49 -0.33 1.24 16 28 H 0.08 0.92 4.65 -51.93 -0.24 0.68 16 29 H 0.12 1.97 6.12 -51.93 -0.32 1.65 16 30 H 0.04 0.66 4.98 -51.93 -0.26 0.40 16 31 H 0.07 1.20 7.63 -51.93 -0.40 0.80 16 32 H 0.34 6.97 9.04 45.56 0.41 7.38 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.10 1.09 3.74 -51.93 -0.19 0.89 16 35 H 0.09 1.01 7.40 -51.93 -0.38 0.62 16 36 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.14 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.15 1.40 4.73 -51.92 -0.25 1.15 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -33.03 313.51 -8.36 -41.39 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -4.43 Total: 9.59 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -0.15 Total: -22.16 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: -0.38 Total: -32.27 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -2.45 Total: -40.79 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 24.84 SS G_CDS: -0.66 Total: 24.18 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.03 -8.36 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351150478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.340 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds