Wall clock time and date at job start Tue Mar 31 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45194 * 109.47169 * 2 1 4 4 C 1.34841 * 117.00180 * 179.97438 * 3 2 1 5 5 O 1.21591 * 119.99593 * 0.02562 * 4 3 2 6 6 C 1.46853 * 120.00242 * 180.02562 * 4 3 2 7 7 C 1.43199 * 119.99964 * 0.02562 * 6 4 3 8 8 N 5.00642 * 99.40186 * 0.02562 * 2 1 3 9 9 C 1.37984 * 120.00009 * 179.97438 * 6 4 3 10 10 C 1.46312 * 120.00184 * 186.84047 * 9 6 4 11 11 C 1.38719 * 126.50156 * 16.93642 * 10 9 6 12 12 N 1.34207 * 107.31506 * 180.14399 * 11 10 9 13 13 C 1.46507 * 125.68783 * 179.88198 * 12 11 10 14 14 C 1.50696 * 109.47107 * 124.71155 * 13 12 11 15 15 H 1.08004 * 120.00090 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00022 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99768 * 359.73277 * 16 14 13 18 18 Si 1.86797 * 120.00205 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47053 * 269.72613 * 18 16 14 20 20 H 1.48494 * 109.47225 * 29.72511 * 18 16 14 21 21 H 1.48497 * 109.47304 * 149.72980 * 18 16 14 22 22 N 1.39893 * 108.62517 * 359.61362 * 12 11 10 23 23 C 1.30347 * 109.07978 * 0.24537 * 22 12 11 24 24 C 1.50704 * 126.01079 * 179.97438 * 23 22 12 25 25 H 1.08999 * 109.47022 * 59.99678 * 1 2 3 26 26 H 1.08999 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47339 * 299.99774 * 1 2 3 28 28 H 1.09005 * 109.46855 * 240.00272 * 2 1 3 29 29 H 1.08999 * 109.47022 * 120.00322 * 2 1 3 30 30 H 1.08006 * 119.99954 * 6.84541 * 9 6 4 31 31 H 1.07990 * 126.34377 * 359.97438 * 11 10 9 32 32 H 1.09004 * 109.46695 * 4.71250 * 13 12 11 33 33 H 1.08999 * 109.46887 * 244.72024 * 13 12 11 34 34 H 0.97007 * 120.00309 * 0.26817 * 17 16 14 35 35 H 1.09000 * 109.47102 * 90.01994 * 24 23 22 36 36 H 1.08994 * 109.47794 * 210.02776 * 24 23 22 37 37 H 1.09001 * 109.46669 * 330.02415 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3508 1.5456 0.0005 5 8 4.0914 0.5813 0.0005 6 6 3.9121 2.9026 0.0011 7 6 3.0398 4.0383 0.0017 8 7 2.3478 4.9392 0.0022 9 6 5.2801 3.0834 0.0022 10 6 5.8404 4.4264 0.1537 11 6 5.1760 5.5495 0.6245 12 7 6.0483 6.5691 0.6004 13 6 5.7651 7.9462 1.0124 14 6 6.7593 8.3710 2.0621 15 1 7.5259 7.6842 2.3893 16 6 6.6911 9.6370 2.6040 17 7 5.7615 10.4755 2.2010 18 14 7.9240 10.1639 3.9047 19 1 7.3934 9.8345 5.2520 20 1 9.2071 9.4481 3.6893 21 1 8.1515 11.6281 3.8068 22 7 7.2750 6.0963 0.1220 23 6 7.1662 4.8256 -0.1472 24 6 8.2584 3.9371 -0.6848 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 5.9372 2.2335 -0.1089 31 1 4.1466 5.5955 0.9478 32 1 4.7569 8.0024 1.4229 33 1 5.8432 8.6070 0.1491 34 1 5.1215 10.2021 1.5253 35 1 8.8085 3.4947 0.1457 36 1 7.8177 3.1460 -1.2913 37 1 8.9389 4.5283 -1.2975 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003183114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:02 Heat of formation + Delta-G solvation = 22.527742 kcal Electronic energy + Delta-G solvation = -21583.171717 eV Core-core repulsion = 18134.763767 eV Total energy + Delta-G solvation = -3448.407949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08078 -40.37983 -37.09738 -36.58466 -34.76788 -33.55244 -32.59673 -31.91474 -29.56217 -29.05006 -26.49922 -24.72898 -23.41001 -22.66560 -21.83804 -20.54798 -19.76284 -18.54534 -17.28894 -16.84544 -16.66994 -16.06815 -15.36186 -14.97315 -14.47882 -14.36253 -13.95154 -13.89579 -13.59557 -13.32400 -13.26168 -13.00051 -12.94025 -12.63693 -12.41077 -12.21794 -12.15680 -11.90613 -11.79228 -11.69627 -11.31297 -10.86806 -10.70402 -10.70256 -10.32937 -10.25834 -10.17299 -9.41692 -8.82414 -8.70005 -7.86739 -6.73710 -4.50139 0.38504 2.24371 2.37803 2.44093 2.84476 2.92528 2.99417 3.29167 3.33038 3.49874 3.65323 3.99952 4.28459 4.55011 4.66612 4.70239 4.76297 4.81412 5.02144 5.02955 5.16968 5.32028 5.33383 5.43295 5.53079 5.66284 5.68657 5.76269 5.84607 5.93498 6.06933 6.29067 6.33568 6.48173 6.79844 7.25199 7.43073 7.52923 7.73373 8.05161 8.12964 8.42877 9.18689 10.64381 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021693 B = 0.003440 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.421294 B = 8138.343746 C = 8940.664738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.355 6.355 4 C 0.533 3.467 5 O -0.516 6.516 6 C -0.188 4.188 7 C 0.272 3.728 8 N -0.430 5.430 9 C 0.170 3.830 10 C -0.299 4.299 11 C 0.108 3.892 12 N -0.297 5.297 13 C 0.238 3.762 14 C -0.615 4.615 15 H 0.067 0.933 16 C 0.026 3.974 17 N -0.899 5.899 18 Si 1.081 2.919 19 H -0.284 1.284 20 H -0.285 1.285 21 H -0.280 1.280 22 N -0.274 5.274 23 C 0.098 3.902 24 C -0.074 4.074 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.160 0.840 31 H 0.179 0.821 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.268 0.732 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 -19.617 -5.075 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.272 6.272 4 C 0.380 3.620 5 O -0.406 6.406 6 C -0.194 4.194 7 C -0.041 4.041 8 N -0.107 5.107 9 C 0.145 3.855 10 C -0.310 4.310 11 C -0.050 4.050 12 N -0.068 5.068 13 C 0.121 3.879 14 C -0.653 4.653 15 H 0.085 0.915 16 C -0.179 4.179 17 N -0.533 5.533 18 Si 0.907 3.093 19 H -0.210 1.210 20 H -0.211 1.211 21 H -0.205 1.205 22 N -0.094 5.094 23 C -0.070 4.070 24 C -0.133 4.133 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.178 0.822 31 H 0.196 0.804 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.300 -16.006 -4.054 16.838 hybrid contribution -1.005 -2.369 -0.909 2.729 sum -4.305 -18.375 -4.963 19.514 Atomic orbital electron populations 1.21815 0.92752 1.02865 1.03672 1.23023 0.95264 0.79981 1.02710 1.86628 1.23811 1.32354 1.84398 1.20234 0.80591 0.88590 0.72596 1.90867 1.60276 1.41593 1.47902 1.16763 0.90673 0.85574 1.26416 1.25224 0.92830 0.92710 0.93335 1.81264 1.08708 1.10386 1.10386 1.22389 0.91596 0.95265 0.76238 1.19106 0.95549 0.93732 1.22640 1.23897 0.97153 0.87673 0.96307 1.49273 1.05997 1.10463 1.41072 1.20067 0.98569 0.72178 0.97113 1.22039 1.16689 1.02741 1.23807 0.91491 1.25988 0.99633 0.92180 1.00129 1.70829 1.15752 1.37449 1.29288 0.83359 0.74718 0.76363 0.74838 1.21044 1.21064 1.20527 1.77243 1.03108 1.10842 1.18195 1.22663 0.93824 0.92652 0.97902 1.20222 0.94866 0.97044 1.01126 0.91486 0.90214 0.91442 0.91062 0.91040 0.82220 0.80442 0.93271 0.93764 0.92140 0.90033 0.90346 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 37.16 0.38 -0.68 16 2 C 0.06 0.58 6.20 37.16 0.23 0.81 16 3 O -0.35 -4.39 9.76 -40.88 -0.40 -4.79 16 4 C 0.53 6.90 7.87 34.22 0.27 7.17 16 5 O -0.52 -7.07 16.09 -19.34 -0.31 -7.38 16 6 C -0.19 -2.47 5.90 -104.58 -0.62 -3.09 16 7 C 0.27 4.22 11.75 -22.47 -0.26 3.95 16 8 N -0.43 -7.51 17.35 41.84 0.73 -6.78 16 9 C 0.17 2.07 9.47 -36.43 -0.35 1.72 16 10 C -0.30 -4.69 5.92 -105.16 -0.62 -5.31 16 11 C 0.11 2.02 10.03 -16.34 -0.16 1.86 16 12 N -0.30 -6.52 3.64 -61.81 -0.22 -6.75 16 13 C 0.24 5.85 5.55 -5.19 -0.03 5.82 16 14 C -0.61 -16.71 9.22 -34.44 -0.32 -17.03 16 15 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 16 C 0.03 0.72 5.46 -17.82 -0.10 0.62 16 17 N -0.90 -25.75 13.65 55.43 0.76 -24.99 16 18 Si 1.08 24.29 29.90 -169.99 -5.08 19.21 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 N -0.27 -5.74 12.30 33.96 0.42 -5.32 16 23 C 0.10 1.60 7.28 -81.90 -0.60 1.00 16 24 C -0.07 -0.81 10.28 36.01 0.37 -0.44 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.16 1.47 7.61 -52.48 -0.40 1.07 16 31 H 0.18 3.23 5.04 -52.49 -0.26 2.97 16 32 H 0.05 1.20 7.93 -51.93 -0.41 0.79 16 33 H 0.04 1.13 8.00 -51.93 -0.42 0.71 16 34 H 0.27 7.55 7.22 -40.82 -0.29 7.26 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.64 8.01 -51.93 -0.42 0.22 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -31.79 337.86 -5.19 -36.99 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.37 Total: -1.68 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.80 Total: -3.60 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 1.68 Total: -43.85 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.71 Total: -12.17 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.08 Total: 19.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.79 -5.19 -36.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003183114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.513 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds