Wall clock time and date at job start Tue Mar 31 2020 02:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45194 * 109.47169 * 2 1 4 4 C 1.34841 * 117.00180 * 179.97438 * 3 2 1 5 5 O 1.21591 * 119.99593 * 0.02562 * 4 3 2 6 6 C 1.46853 * 120.00242 * 180.02562 * 4 3 2 7 7 C 1.43199 * 119.99964 * 0.02562 * 6 4 3 8 8 N 5.00642 * 99.40186 * 0.02562 * 2 1 3 9 9 C 1.37984 * 120.00009 * 179.97438 * 6 4 3 10 10 C 1.46312 * 120.00184 * 186.84047 * 9 6 4 11 11 C 1.38719 * 126.50156 * 16.93642 * 10 9 6 12 12 N 1.34207 * 107.31506 * 180.14399 * 11 10 9 13 13 C 1.46507 * 125.68783 * 179.88198 * 12 11 10 14 14 C 1.50696 * 109.47107 * 124.71155 * 13 12 11 15 15 H 1.08004 * 120.00090 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00022 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99768 * 359.73277 * 16 14 13 18 18 Si 1.86797 * 120.00205 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47053 * 269.72613 * 18 16 14 20 20 H 1.48494 * 109.47225 * 29.72511 * 18 16 14 21 21 H 1.48497 * 109.47304 * 149.72980 * 18 16 14 22 22 N 1.39893 * 108.62517 * 359.61362 * 12 11 10 23 23 C 1.30347 * 109.07978 * 0.24537 * 22 12 11 24 24 C 1.50704 * 126.01079 * 179.97438 * 23 22 12 25 25 H 1.08999 * 109.47022 * 59.99678 * 1 2 3 26 26 H 1.08999 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47339 * 299.99774 * 1 2 3 28 28 H 1.09005 * 109.46855 * 240.00272 * 2 1 3 29 29 H 1.08999 * 109.47022 * 120.00322 * 2 1 3 30 30 H 1.08006 * 119.99954 * 6.84541 * 9 6 4 31 31 H 1.07990 * 126.34377 * 359.97438 * 11 10 9 32 32 H 1.09004 * 109.46695 * 4.71250 * 13 12 11 33 33 H 1.08999 * 109.46887 * 244.72024 * 13 12 11 34 34 H 0.97007 * 120.00309 * 0.26817 * 17 16 14 35 35 H 1.09000 * 109.47102 * 90.01994 * 24 23 22 36 36 H 1.08994 * 109.47794 * 210.02776 * 24 23 22 37 37 H 1.09001 * 109.46669 * 330.02415 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3508 1.5456 0.0005 5 8 4.0914 0.5813 0.0005 6 6 3.9121 2.9026 0.0011 7 6 3.0398 4.0383 0.0017 8 7 2.3478 4.9392 0.0022 9 6 5.2801 3.0834 0.0022 10 6 5.8404 4.4264 0.1537 11 6 5.1760 5.5495 0.6245 12 7 6.0483 6.5691 0.6004 13 6 5.7651 7.9462 1.0124 14 6 6.7593 8.3710 2.0621 15 1 7.5259 7.6842 2.3893 16 6 6.6911 9.6370 2.6040 17 7 5.7615 10.4755 2.2010 18 14 7.9240 10.1639 3.9047 19 1 7.3934 9.8345 5.2520 20 1 9.2071 9.4481 3.6893 21 1 8.1515 11.6281 3.8068 22 7 7.2750 6.0963 0.1220 23 6 7.1662 4.8256 -0.1472 24 6 8.2584 3.9371 -0.6848 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 5.9372 2.2335 -0.1089 31 1 4.1466 5.5955 0.9478 32 1 4.7569 8.0024 1.4229 33 1 5.8432 8.6070 0.1491 34 1 5.1215 10.2021 1.5253 35 1 8.8085 3.4947 0.1457 36 1 7.8177 3.1460 -1.2913 37 1 8.9389 4.5283 -1.2975 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003183114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:01 Heat of formation + Delta-G solvation = 3.807032 kcal Electronic energy + Delta-G solvation = -21583.983508 eV Core-core repulsion = 18134.763767 eV Total energy + Delta-G solvation = -3449.219740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.48278 -41.37894 -38.28334 -37.63900 -36.48317 -35.00497 -34.09401 -32.61864 -30.98616 -30.38725 -27.95816 -26.14205 -24.72902 -23.97551 -22.83729 -21.89885 -21.03747 -19.88673 -19.02814 -17.93536 -17.62039 -17.50892 -16.56811 -16.47993 -15.83284 -15.66826 -15.30124 -15.02906 -14.88009 -14.67662 -14.50474 -14.33574 -14.00593 -13.69650 -13.54280 -13.50445 -13.24557 -13.18497 -12.92449 -12.88123 -12.61847 -12.47892 -12.00340 -11.82001 -11.63795 -11.52102 -11.47149 -11.14266 -10.79187 -10.41953 -9.25759 -8.89739 -6.69200 -0.73685 0.84562 1.27022 1.37476 1.40646 1.47444 1.54875 1.66006 1.75322 1.81437 2.42005 2.47427 2.84306 2.90929 3.34862 3.42920 3.67430 3.97255 4.07820 4.10836 4.12218 4.15042 4.36473 4.41775 4.48059 4.58635 4.88249 4.89392 4.90156 4.94394 5.01194 5.09375 5.14679 5.39014 5.42868 5.59213 5.62845 5.99674 6.23287 6.35094 6.64717 6.69491 7.08006 8.46774 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021693 B = 0.003440 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.421294 B = 8138.343746 C = 8940.664738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.541 3.459 5 O -0.519 6.519 6 C -0.182 4.182 7 C 0.283 3.717 8 N -0.471 5.471 9 C 0.191 3.809 10 C -0.285 4.285 11 C 0.089 3.911 12 N -0.330 5.330 13 C 0.251 3.749 14 C -0.623 4.623 15 H 0.054 0.946 16 C -0.019 4.019 17 N -0.921 5.921 18 Si 1.125 2.875 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.275 1.275 22 N -0.326 5.326 23 C 0.111 3.889 24 C -0.075 4.075 25 H 0.062 0.938 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.205 0.795 31 H 0.175 0.825 32 H 0.041 0.959 33 H 0.023 0.977 34 H 0.259 0.741 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 -22.863 -5.128 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.286 6.286 4 C 0.387 3.613 5 O -0.410 6.410 6 C -0.189 4.189 7 C -0.029 4.029 8 N -0.149 5.149 9 C 0.168 3.832 10 C -0.296 4.296 11 C -0.067 4.067 12 N -0.101 5.101 13 C 0.132 3.868 14 C -0.660 4.660 15 H 0.072 0.928 16 C -0.219 4.219 17 N -0.556 5.556 18 Si 0.945 3.055 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.201 1.201 22 N -0.147 5.147 23 C -0.057 4.057 24 C -0.133 4.133 25 H 0.081 0.919 26 H 0.124 0.876 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.222 0.778 31 H 0.192 0.808 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.374 -19.302 -4.125 19.880 hybrid contribution -1.395 -1.585 -0.980 2.328 sum -3.770 -20.887 -5.105 21.830 Atomic orbital electron populations 1.21853 0.91317 1.04432 1.03164 1.23358 0.96453 0.78437 1.03510 1.86626 1.23374 1.34566 1.84062 1.19989 0.80894 0.88009 0.72411 1.90868 1.60445 1.41511 1.48180 1.16944 0.90781 0.85193 1.25976 1.25671 0.92332 0.92610 0.92306 1.81276 1.10140 1.11708 1.11788 1.22656 0.91510 0.94496 0.74571 1.19358 0.95137 0.94217 1.20921 1.24121 0.97071 0.88252 0.97255 1.48897 1.07359 1.09886 1.43978 1.19553 0.97504 0.74180 0.95612 1.22231 1.16752 1.02719 1.24346 0.92777 1.27431 1.00483 0.92361 1.01588 1.70929 1.16674 1.38005 1.30022 0.82820 0.73147 0.76308 0.73229 1.19294 1.19863 1.20054 1.77182 1.03282 1.13487 1.20750 1.23582 0.95138 0.91586 0.95402 1.20541 0.93562 0.96911 1.02255 0.91884 0.87594 0.92046 0.90113 0.90368 0.77805 0.80787 0.94123 0.95898 0.93165 0.87894 0.86512 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.29 71.98 0.74 -1.02 16 2 C 0.06 0.87 6.20 71.98 0.45 1.31 16 3 O -0.37 -8.40 9.76 -57.54 -0.56 -8.96 16 4 C 0.54 12.47 7.87 70.08 0.55 13.02 16 5 O -0.52 -12.30 16.09 19.54 0.31 -11.99 16 6 C -0.18 -4.37 5.90 -19.84 -0.12 -4.49 16 7 C 0.28 8.62 11.75 88.33 1.04 9.66 16 8 N -0.47 -16.76 17.35 19.00 0.33 -16.43 16 9 C 0.19 3.98 9.47 24.31 0.23 4.21 16 10 C -0.28 -8.44 5.92 -20.21 -0.12 -8.56 16 11 C 0.09 3.38 10.03 84.45 0.85 4.23 16 12 N -0.33 -15.01 3.64 -349.47 -1.27 -16.28 16 13 C 0.25 13.08 5.55 85.63 0.48 13.55 16 14 C -0.62 -35.11 9.22 25.60 0.24 -34.87 16 15 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 16 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 17 N -0.92 -54.41 13.65 21.45 0.29 -54.12 16 18 Si 1.13 49.10 29.90 68.60 2.05 51.15 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 22 N -0.33 -13.85 12.30 -46.46 -0.57 -14.42 16 23 C 0.11 3.43 7.28 43.63 0.32 3.74 16 24 C -0.07 -1.34 10.28 71.24 0.73 -0.61 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.21 2.53 7.61 -2.91 -0.02 2.51 16 31 H 0.18 6.59 5.04 -2.92 -0.01 6.58 16 32 H 0.04 2.14 7.93 -2.39 -0.02 2.12 16 33 H 0.02 1.27 8.00 -2.39 -0.02 1.25 16 34 H 0.26 15.32 7.22 -92.70 -0.67 14.65 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.12 1.22 8.01 -2.39 -0.02 1.21 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -72.22 337.86 7.62 -64.59 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.20 Total: 6.87 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.84 Total: -0.41 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -1.22 Total: -101.25 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.25 Total: -20.95 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.05 Total: 51.15 kcal Total: -72.22 7.62 -64.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003183114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.402 kcal (2) G-P(sol) polarization free energy of solvation -72.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds