Wall clock time and date at job start Tue Mar 31 2020 02:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38649 * 119.15531 * 2 1 4 4 C 1.39427 * 119.34645 * 179.97438 * 3 2 1 5 5 C 1.47638 * 121.10125 * 180.02562 * 4 3 2 6 6 O 1.21517 * 120.00121 * 179.97438 * 5 4 3 7 7 O 1.34723 * 119.99746 * 359.97438 * 5 4 3 8 8 C 1.34803 * 117.00314 * 180.02562 * 7 5 4 9 9 H 1.08007 * 119.99427 * 359.97438 * 8 7 5 10 10 C 1.38870 * 120.00509 * 180.02562 * 8 7 5 11 11 N 1.31380 * 119.99924 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00039 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47308 * 59.99515 * 12 10 8 14 14 H 1.48509 * 109.47072 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47276 * 299.99385 * 12 10 8 16 16 C 1.41370 * 117.79925 * 0.02562 * 4 3 2 17 17 C 1.41074 * 133.90705 * 179.97438 * 16 4 3 18 18 N 1.30268 * 108.58495 * 179.77530 * 17 16 4 19 19 N 1.39993 * 109.74144 * 0.39311 * 18 17 16 20 20 C 1.46506 * 125.90923 * 179.86441 * 19 18 17 21 21 C 1.52997 * 109.47289 * 299.69025 * 20 19 18 22 22 C 1.52992 * 109.46999 * 59.69493 * 20 19 18 23 23 C 1.37073 * 108.18175 * 359.60427 * 19 18 17 24 24 N 1.31472 * 119.16002 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47106 * 90.00194 * 1 2 3 26 26 H 1.09005 * 109.47199 * 210.00068 * 1 2 3 27 27 H 1.09004 * 109.46995 * 329.99788 * 1 2 3 28 28 H 1.07996 * 120.33225 * 359.97438 * 3 2 1 29 29 H 0.96998 * 119.99835 * 180.02562 * 11 10 8 30 30 H 1.07996 * 125.71226 * 0.02695 * 17 16 4 31 31 H 1.08998 * 109.46566 * 179.68759 * 20 19 18 32 32 H 1.09002 * 109.47153 * 179.97438 * 21 20 19 33 33 H 1.09001 * 109.46832 * 60.00146 * 21 20 19 34 34 H 1.09004 * 109.47261 * 300.00128 * 21 20 19 35 35 H 1.08996 * 109.47747 * 59.99485 * 22 20 19 36 36 H 1.09002 * 109.47103 * 179.97438 * 22 20 19 37 37 H 1.09001 * 109.47066 * 299.99819 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1825 1.2108 0.0000 4 6 3.5767 1.2155 0.0005 5 6 4.3351 2.4822 0.0011 6 8 5.5501 2.4629 0.0021 7 8 3.6801 3.6594 0.0006 8 6 4.4320 4.7783 0.0007 9 1 5.5096 4.7046 0.0015 10 6 3.8213 6.0254 0.0007 11 7 2.5105 6.1150 0.0002 12 14 4.8634 7.5757 0.0015 13 1 5.7211 7.5963 -1.2106 14 1 3.9775 8.7677 0.0008 15 1 5.7199 7.5958 1.2144 16 6 4.2402 -0.0329 0.0005 17 6 5.5969 -0.4197 0.0005 18 7 5.6575 -1.7210 0.0053 19 7 4.3633 -2.2547 -0.0003 20 6 4.0214 -3.6793 -0.0002 21 6 4.6031 -4.3436 -1.2497 22 6 4.6040 -4.3435 1.2488 23 6 3.4714 -1.2138 0.0000 24 7 2.1476 -1.1481 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6341 2.1412 -0.0004 29 1 2.0840 6.9862 -0.0002 30 1 6.4436 0.2506 0.0009 31 1 2.9373 -3.7926 0.0003 32 1 4.3491 -5.4036 -1.2493 33 1 5.6872 -4.2302 -1.2500 34 1 4.1880 -3.8703 -2.1395 35 1 4.1896 -3.8703 2.1389 36 1 4.3492 -5.4033 1.2491 37 1 5.6881 -4.2301 1.2484 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010204796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:56 Heat of formation + Delta-G solvation = 18.619821 kcal Electronic energy + Delta-G solvation = -22473.348357 eV Core-core repulsion = 19024.770948 eV Total energy + Delta-G solvation = -3448.577410 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.51588 -39.07448 -38.08995 -35.73591 -35.18002 -32.59416 -32.20308 -31.66011 -29.53820 -27.41379 -27.27268 -25.85486 -23.92955 -22.81315 -22.12004 -20.75803 -19.17695 -17.93812 -17.60542 -16.77012 -16.48759 -15.53146 -15.09775 -14.71908 -14.53777 -14.45170 -14.38620 -13.87967 -13.80477 -13.24843 -13.00467 -12.78537 -12.40262 -12.39504 -12.22941 -11.97182 -11.75073 -11.71643 -11.41727 -11.38613 -11.35191 -10.65117 -10.60716 -10.55369 -10.05052 -10.00640 -9.62343 -8.99721 -8.74076 -8.51610 -8.05880 -6.61304 -4.20533 0.66944 1.46895 2.28235 2.72053 3.08286 3.10735 3.14680 3.46709 3.75258 4.19282 4.21692 4.24584 4.54041 4.82894 4.87908 4.99627 5.01576 5.07616 5.14355 5.25268 5.37795 5.46963 5.59751 5.65069 5.68475 5.70005 5.81881 5.86995 6.01225 6.01679 6.10933 6.31441 6.48122 6.78409 6.81886 7.09764 7.22978 7.68979 7.76707 8.12642 8.55398 8.86705 9.66309 10.55360 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.004143 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.183170 B = 6756.226240 C = 7682.352282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.190 3.810 3 C -0.172 4.172 4 C 0.041 3.959 5 C 0.422 3.578 6 O -0.545 6.545 7 O -0.195 6.195 8 C -0.369 4.369 9 H 0.101 0.899 10 C 0.043 3.957 11 N -0.849 5.849 12 Si 0.948 3.052 13 H -0.267 1.267 14 H -0.277 1.277 15 H -0.267 1.267 16 C -0.194 4.194 17 C 0.102 3.898 18 N -0.252 5.252 19 N -0.390 5.390 20 C 0.168 3.832 21 C -0.160 4.160 22 C -0.160 4.160 23 C 0.311 3.689 24 N -0.506 5.506 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.158 0.842 29 H 0.275 0.725 30 H 0.204 0.796 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 -14.999 -0.016 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.041 3.959 3 C -0.194 4.194 4 C 0.029 3.971 5 C 0.270 3.730 6 O -0.444 6.444 7 O -0.101 6.101 8 C -0.445 4.445 9 H 0.119 0.881 10 C -0.164 4.164 11 N -0.485 5.485 12 Si 0.772 3.228 13 H -0.192 1.192 14 H -0.202 1.202 15 H -0.192 1.192 16 C -0.204 4.204 17 C -0.094 4.094 18 N -0.065 5.065 19 N -0.182 5.182 20 C 0.067 3.933 21 C -0.218 4.218 22 C -0.218 4.218 23 C 0.071 3.929 24 N -0.223 5.223 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.175 0.825 29 H 0.085 0.915 30 H 0.221 0.779 31 H 0.122 0.878 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.134 -16.840 -0.011 16.974 hybrid contribution 0.403 2.209 -0.012 2.245 sum -1.731 -14.631 -0.023 14.733 Atomic orbital electron populations 1.20765 0.87974 1.03758 1.03414 1.21104 0.96596 0.86616 0.91564 1.22217 0.93451 1.00028 1.03731 1.19240 0.92895 0.90309 0.94659 1.20419 0.86218 0.84632 0.81707 1.90600 1.14552 1.87691 1.51547 1.83862 1.39739 1.12798 1.73652 1.21379 0.91829 0.80507 1.50805 0.88129 1.25453 0.96357 0.98671 0.95873 1.69944 1.08498 1.26134 1.43888 0.85662 0.78852 0.78662 0.79624 1.19215 1.20173 1.19211 1.19251 0.94934 0.92932 1.13286 1.24079 0.97021 0.91547 0.96711 1.76809 0.99008 1.10680 1.20053 1.48547 1.01028 1.04325 1.64287 1.21192 1.00553 0.75058 0.96527 1.22142 1.02553 1.00347 0.96766 1.22141 1.02558 1.00355 0.96767 1.18849 0.88810 0.87291 0.97928 1.66190 1.06291 1.30280 1.19548 0.89991 0.90519 0.89803 0.82464 0.91540 0.77941 0.87796 0.90914 0.91228 0.92209 0.92218 0.90918 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.14 36.01 0.37 -0.79 16 2 C 0.19 3.04 6.77 -82.59 -0.56 2.48 16 3 C -0.17 -3.18 9.30 -38.99 -0.36 -3.55 16 4 C 0.04 0.87 5.93 -104.43 -0.62 0.25 16 5 C 0.42 10.57 7.85 34.57 0.27 10.84 16 6 O -0.55 -14.29 14.39 -19.28 -0.28 -14.57 16 7 O -0.19 -5.39 9.09 -21.47 -0.20 -5.58 16 8 C -0.37 -10.44 9.65 30.97 0.30 -10.14 16 9 H 0.10 2.84 6.86 -52.48 -0.36 2.48 16 10 C 0.04 1.14 5.50 -17.51 -0.10 1.04 16 11 N -0.85 -23.40 13.67 55.49 0.76 -22.64 16 12 Si 0.95 20.22 29.55 -169.99 -5.02 15.20 16 13 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 14 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 16 C -0.19 -3.85 6.02 -106.62 -0.64 -4.50 16 17 C 0.10 1.88 11.29 -17.14 -0.19 1.69 16 18 N -0.25 -4.32 12.29 30.78 0.38 -3.94 16 19 N -0.39 -6.29 3.33 -53.92 -0.18 -6.47 16 20 C 0.17 2.02 3.70 -67.93 -0.25 1.77 16 21 C -0.16 -1.64 9.45 37.16 0.35 -1.28 16 22 C -0.16 -1.64 9.44 37.15 0.35 -1.29 16 23 C 0.31 5.64 7.96 -156.07 -1.24 4.40 16 24 N -0.51 -8.61 10.25 -8.60 -0.09 -8.70 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.16 2.89 7.70 -52.49 -0.40 2.49 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.20 3.65 7.08 -52.49 -0.37 3.28 16 31 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -31.74 328.13 -6.50 -38.24 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.49 Total: 2.59 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -2.33 Total: 0.93 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.87 Total: -41.75 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.47 Total: -20.15 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.74 -6.50 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010204796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.857 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds