Wall clock time and date at job start Tue Mar 31 2020 02:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38649 * 119.15531 * 2 1 4 4 C 1.39427 * 119.34645 * 179.97438 * 3 2 1 5 5 C 1.47638 * 121.10125 * 180.02562 * 4 3 2 6 6 O 1.21517 * 120.00121 * 179.97438 * 5 4 3 7 7 O 1.34723 * 119.99746 * 359.97438 * 5 4 3 8 8 C 1.34803 * 117.00314 * 180.02562 * 7 5 4 9 9 H 1.08007 * 119.99427 * 359.97438 * 8 7 5 10 10 C 1.38870 * 120.00509 * 180.02562 * 8 7 5 11 11 N 1.31380 * 119.99924 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00039 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47308 * 59.99515 * 12 10 8 14 14 H 1.48509 * 109.47072 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47276 * 299.99385 * 12 10 8 16 16 C 1.41370 * 117.79925 * 0.02562 * 4 3 2 17 17 C 1.41074 * 133.90705 * 179.97438 * 16 4 3 18 18 N 1.30268 * 108.58495 * 179.77530 * 17 16 4 19 19 N 1.39993 * 109.74144 * 0.39311 * 18 17 16 20 20 C 1.46506 * 125.90923 * 179.86441 * 19 18 17 21 21 C 1.52997 * 109.47289 * 299.69025 * 20 19 18 22 22 C 1.52992 * 109.46999 * 59.69493 * 20 19 18 23 23 C 1.37073 * 108.18175 * 359.60427 * 19 18 17 24 24 N 1.31472 * 119.16002 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47106 * 90.00194 * 1 2 3 26 26 H 1.09005 * 109.47199 * 210.00068 * 1 2 3 27 27 H 1.09004 * 109.46995 * 329.99788 * 1 2 3 28 28 H 1.07996 * 120.33225 * 359.97438 * 3 2 1 29 29 H 0.96998 * 119.99835 * 180.02562 * 11 10 8 30 30 H 1.07996 * 125.71226 * 0.02695 * 17 16 4 31 31 H 1.08998 * 109.46566 * 179.68759 * 20 19 18 32 32 H 1.09002 * 109.47153 * 179.97438 * 21 20 19 33 33 H 1.09001 * 109.46832 * 60.00146 * 21 20 19 34 34 H 1.09004 * 109.47261 * 300.00128 * 21 20 19 35 35 H 1.08996 * 109.47747 * 59.99485 * 22 20 19 36 36 H 1.09002 * 109.47103 * 179.97438 * 22 20 19 37 37 H 1.09001 * 109.47066 * 299.99819 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1825 1.2108 0.0000 4 6 3.5767 1.2155 0.0005 5 6 4.3351 2.4822 0.0011 6 8 5.5501 2.4629 0.0021 7 8 3.6801 3.6594 0.0006 8 6 4.4320 4.7783 0.0007 9 1 5.5096 4.7046 0.0015 10 6 3.8213 6.0254 0.0007 11 7 2.5105 6.1150 0.0002 12 14 4.8634 7.5757 0.0015 13 1 5.7211 7.5963 -1.2106 14 1 3.9775 8.7677 0.0008 15 1 5.7199 7.5958 1.2144 16 6 4.2402 -0.0329 0.0005 17 6 5.5969 -0.4197 0.0005 18 7 5.6575 -1.7210 0.0053 19 7 4.3633 -2.2547 -0.0003 20 6 4.0214 -3.6793 -0.0002 21 6 4.6031 -4.3436 -1.2497 22 6 4.6040 -4.3435 1.2488 23 6 3.4714 -1.2138 0.0000 24 7 2.1476 -1.1481 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6341 2.1412 -0.0004 29 1 2.0840 6.9862 -0.0002 30 1 6.4436 0.2506 0.0009 31 1 2.9373 -3.7926 0.0003 32 1 4.3491 -5.4036 -1.2493 33 1 5.6872 -4.2302 -1.2500 34 1 4.1880 -3.8703 -2.1395 35 1 4.1896 -3.8703 2.1389 36 1 4.3492 -5.4033 1.2491 37 1 5.6881 -4.2301 1.2484 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010204796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:56 Heat of formation + Delta-G solvation = 0.010069 kcal Electronic energy + Delta-G solvation = -22474.155337 eV Core-core repulsion = 19024.770948 eV Total energy + Delta-G solvation = -3449.384389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.94512 -41.01076 -39.51816 -37.42976 -36.60019 -34.45675 -33.87511 -32.92498 -30.82293 -28.57703 -28.22953 -27.78138 -25.60507 -24.02101 -23.58642 -22.28472 -20.63706 -19.98388 -18.96956 -18.53832 -17.90798 -17.00712 -16.83350 -16.41266 -16.25923 -16.06312 -15.58892 -15.16619 -14.89959 -14.64662 -14.55009 -13.99237 -13.69474 -13.61437 -13.30285 -13.16398 -13.15233 -13.05773 -12.74798 -12.50719 -12.48094 -12.40013 -12.16725 -12.08994 -11.82971 -11.57849 -11.44207 -10.73961 -10.65882 -9.90345 -9.45983 -8.60960 -6.35871 -0.86530 0.01065 1.02051 1.20088 1.35321 1.41599 1.50881 1.74691 2.00996 2.47919 2.61095 2.94127 2.98500 3.29263 3.60602 3.66864 3.73811 3.93465 3.94897 4.12622 4.30349 4.35232 4.58440 4.65206 4.65399 4.74007 4.78011 4.85049 4.90628 4.97728 5.01665 5.13211 5.15312 5.19155 5.31856 5.43813 5.74648 5.82329 6.27092 6.51000 6.71516 6.82832 7.62476 8.58411 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.004143 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.183170 B = 6756.226240 C = 7682.352282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.200 3.800 3 C -0.163 4.163 4 C 0.010 3.990 5 C 0.426 3.574 6 O -0.563 6.563 7 O -0.218 6.218 8 C -0.418 4.418 9 H 0.087 0.913 10 C 0.003 3.997 11 N -0.886 5.886 12 Si 1.018 2.982 13 H -0.261 1.261 14 H -0.257 1.257 15 H -0.261 1.261 16 C -0.215 4.215 17 C 0.084 3.916 18 N -0.241 5.241 19 N -0.379 5.379 20 C 0.154 3.846 21 C -0.153 4.153 22 C -0.154 4.154 23 C 0.301 3.699 24 N -0.492 5.492 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.156 0.844 29 H 0.284 0.716 30 H 0.199 0.801 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 -16.810 -0.040 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.049 3.951 3 C -0.185 4.185 4 C -0.001 4.001 5 C 0.275 3.725 6 O -0.462 6.462 7 O -0.125 6.125 8 C -0.494 4.494 9 H 0.105 0.895 10 C -0.199 4.199 11 N -0.522 5.522 12 Si 0.837 3.163 13 H -0.186 1.186 14 H -0.181 1.181 15 H -0.186 1.186 16 C -0.225 4.225 17 C -0.111 4.111 18 N -0.056 5.056 19 N -0.171 5.171 20 C 0.054 3.946 21 C -0.211 4.211 22 C -0.211 4.211 23 C 0.061 3.939 24 N -0.209 5.209 25 H 0.121 0.879 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.174 0.826 29 H 0.093 0.907 30 H 0.216 0.784 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.127 0.873 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.420 -18.700 -0.034 19.010 hybrid contribution 0.735 2.461 -0.006 2.568 sum -2.685 -16.240 -0.040 16.460 Atomic orbital electron populations 1.20943 0.83985 1.05417 1.05192 1.21825 0.98779 0.85138 0.89317 1.22379 0.92384 1.01301 1.02464 1.19137 0.94002 0.88892 0.98108 1.21216 0.86452 0.85359 0.79512 1.90557 1.15670 1.88203 1.51737 1.83878 1.40134 1.13394 1.75101 1.21559 0.91624 0.81655 1.54533 0.89495 1.26571 0.97796 1.01291 0.94277 1.70009 1.10031 1.27545 1.44617 0.84674 0.77373 0.74428 0.79864 1.18583 1.18103 1.18578 1.19432 0.95800 0.93118 1.14159 1.24009 0.96720 0.92086 0.98283 1.76757 0.99887 1.09922 1.19031 1.49048 1.00107 1.05536 1.62411 1.21727 1.01589 0.72828 0.98421 1.22120 1.01659 1.02221 0.95119 1.22119 1.01663 1.02231 0.95122 1.19074 0.89313 0.87323 0.98162 1.66401 1.05459 1.30337 1.18722 0.87882 0.88596 0.88424 0.82648 0.90686 0.78425 0.86709 0.87301 0.92177 0.93335 0.93353 0.87303 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 10.14 71.24 0.72 -1.18 16 2 C 0.20 6.02 6.77 42.71 0.29 6.31 16 3 C -0.16 -6.06 9.30 22.65 0.21 -5.85 16 4 C 0.01 0.46 5.93 -19.74 -0.12 0.34 16 5 C 0.43 22.52 7.85 70.30 0.55 23.07 16 6 O -0.56 -31.24 14.39 19.78 0.28 -30.96 16 7 O -0.22 -12.73 9.09 11.96 0.11 -12.62 16 8 C -0.42 -24.83 9.65 67.97 0.66 -24.17 16 9 H 0.09 5.21 6.86 -2.91 -0.02 5.19 16 10 C 0.00 0.17 5.50 84.91 0.47 0.64 16 11 N -0.89 -49.87 13.67 21.64 0.30 -49.57 16 12 Si 1.02 41.79 29.55 68.60 2.03 43.82 16 13 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 14 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 15 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 16 C -0.21 -8.72 6.02 -21.16 -0.13 -8.85 16 17 C 0.08 3.20 11.29 85.62 0.97 4.17 16 18 N -0.24 -8.26 12.29 -56.52 -0.69 -8.95 16 19 N -0.38 -11.79 3.33 -324.51 -1.08 -12.87 16 20 C 0.15 3.31 3.70 44.99 0.17 3.47 16 21 C -0.15 -2.72 9.45 71.98 0.68 -2.04 16 22 C -0.15 -2.72 9.44 71.98 0.68 -2.04 16 23 C 0.30 10.69 7.96 134.11 1.07 11.76 16 24 N -0.49 -15.78 10.25 -181.13 -1.86 -17.64 16 25 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.10 1.69 8.07 -2.39 -0.02 1.67 16 28 H 0.16 5.81 7.70 -2.91 -0.02 5.78 16 29 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.20 7.59 7.08 -2.91 -0.02 7.57 16 31 H 0.12 2.27 8.07 -2.39 -0.02 2.25 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -72.03 328.13 6.39 -65.64 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 1.09 Total: 17.53 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 6.21 Total: 5.62 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -3.34 Total: -89.03 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: 0.39 Total: -43.58 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -72.03 6.39 -65.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010204796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.648 kcal (2) G-P(sol) polarization free energy of solvation -72.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds