Wall clock time and date at job start Tue Mar 31 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34731 * 117.00040 * 2 1 4 4 O 1.21461 * 119.99671 * 0.02562 * 3 2 1 5 5 C 1.47744 * 120.00069 * 180.02562 * 3 2 1 6 6 C 1.39391 * 121.09750 * 352.78122 * 5 3 2 7 7 C 1.38640 * 119.35776 * 180.22995 * 6 5 3 8 8 C 1.50709 * 119.16100 * 179.74419 * 7 6 5 9 9 N 1.31480 * 121.68037 * 359.44248 * 7 6 5 10 10 C 1.32500 * 121.98520 * 0.60648 * 9 7 6 11 11 C 1.40980 * 120.21941 * 359.66283 * 10 9 7 12 12 C 1.41092 * 107.12821 * 180.02562 * 11 10 9 13 13 C 1.50705 * 125.70082 * 179.97438 * 12 11 10 14 14 N 1.30245 * 108.59494 * 0.02562 * 12 11 10 15 15 N 1.37088 * 133.44858 * 179.71050 * 10 9 7 16 16 C 1.46502 * 125.90489 * 0.02562 * 15 10 9 17 17 C 1.50697 * 109.47649 * 269.97668 * 16 15 10 18 18 H 1.08001 * 119.99654 * 359.97438 * 17 16 15 19 19 C 1.37867 * 120.00349 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00148 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00093 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47301 * 59.99871 * 21 19 17 23 23 H 1.48507 * 109.47091 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47249 * 299.99762 * 21 19 17 25 25 H 1.09000 * 109.47330 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47130 * 299.99748 * 1 2 3 27 27 H 1.08998 * 109.47383 * 59.99718 * 1 2 3 28 28 H 1.08000 * 120.31666 * 359.95668 * 6 5 3 29 29 H 1.09003 * 109.46802 * 90.00339 * 8 7 6 30 30 H 1.08995 * 109.47578 * 210.00052 * 8 7 6 31 31 H 1.09001 * 109.46995 * 330.00585 * 8 7 6 32 32 H 1.08998 * 109.47017 * 76.55837 * 13 12 11 33 33 H 1.09002 * 109.47068 * 196.56115 * 13 12 11 34 34 H 1.08999 * 109.46967 * 316.56355 * 13 12 11 35 35 H 1.09003 * 109.47302 * 29.97824 * 16 15 10 36 36 H 1.09005 * 109.47146 * 149.97362 * 16 15 10 37 37 H 0.96997 * 119.99995 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4021 2.2191 0.0005 5 6 3.5391 1.2778 -0.0006 6 6 4.3201 0.1329 0.1489 7 6 5.7017 0.2478 0.1479 8 6 6.5418 -0.9922 0.3156 9 7 6.2979 1.4101 -0.0015 10 6 5.6144 2.5358 -0.1473 11 6 4.2048 2.5145 -0.1530 12 6 3.7698 3.8457 -0.3238 13 6 2.3344 4.3002 -0.3904 14 7 4.8160 4.6161 -0.4155 15 7 5.9808 3.8467 -0.3110 16 6 7.3539 4.3542 -0.3684 17 6 7.8178 4.7067 1.0213 18 1 7.1559 4.5671 1.8632 19 6 9.0868 5.2085 1.2180 20 7 9.8924 5.3800 0.1926 21 14 9.6616 5.6461 2.9407 22 1 9.6173 4.4357 3.7997 23 1 11.0535 6.1605 2.8824 24 1 8.7711 6.6896 3.5095 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.8533 -0.8336 0.2687 29 1 6.7545 -1.4220 -0.6633 30 1 7.4780 -0.7327 0.8096 31 1 6.0003 -1.7186 0.9216 32 1 1.9093 4.3091 0.6132 33 1 2.2904 5.3042 -0.8126 34 1 1.7655 3.6160 -1.0198 35 1 8.0073 3.5883 -0.7862 36 1 7.3867 5.2429 -0.9988 37 1 10.7853 5.7327 0.3310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012396269.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:59 Heat of formation + Delta-G solvation = 25.455797 kcal Electronic energy + Delta-G solvation = -22733.801961 eV Core-core repulsion = 19285.520981 eV Total energy + Delta-G solvation = -3448.280979 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.48912 -40.19552 -38.04917 -36.64665 -34.19488 -32.84039 -31.94330 -31.29344 -28.96420 -28.04277 -27.17913 -26.09435 -24.48438 -22.98745 -21.63211 -21.15983 -19.16094 -17.73249 -17.12722 -16.96753 -16.69015 -16.47862 -16.08181 -15.03313 -14.77946 -14.38844 -13.90326 -13.70456 -13.55187 -13.39687 -12.88938 -12.64706 -12.54483 -12.38382 -12.24398 -12.16087 -11.85148 -11.54325 -11.38784 -11.01750 -10.82733 -10.81906 -10.41373 -10.33906 -10.23545 -10.12690 -9.60748 -9.10781 -8.59932 -8.35661 -7.65670 -6.21674 -4.28683 0.48235 1.48260 2.41402 2.50095 2.92663 3.08396 3.26359 3.29248 3.34268 4.02366 4.31455 4.49097 4.51218 4.76901 4.90511 4.95357 4.99501 5.07170 5.13968 5.26718 5.42136 5.53247 5.65297 5.70596 5.81586 5.92032 6.01245 6.06110 6.15304 6.23664 6.42621 6.57743 6.83447 7.02523 7.15140 7.52337 7.68730 7.75707 7.90824 8.09842 8.42027 8.74399 9.36366 10.86161 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.004743 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.231355 B = 5901.511211 C = 6700.549014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.506 3.494 4 O -0.483 6.483 5 C -0.010 4.010 6 C -0.163 4.163 7 C 0.174 3.826 8 C -0.102 4.102 9 N -0.460 5.460 10 C 0.316 3.684 11 C -0.187 4.187 12 C 0.078 3.922 13 C -0.059 4.059 14 N -0.225 5.225 15 N -0.339 5.339 16 C 0.266 3.734 17 C -0.535 4.535 18 H 0.061 0.939 19 C 0.067 3.933 20 N -0.892 5.892 21 Si 0.907 3.093 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.148 0.852 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.368 -13.622 -1.231 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.351 3.649 4 O -0.371 6.371 5 C -0.022 4.022 6 C -0.186 4.186 7 C 0.021 3.979 8 C -0.159 4.159 9 N -0.174 5.174 10 C 0.073 3.927 11 C -0.199 4.199 12 C -0.095 4.095 13 C -0.117 4.117 14 N -0.044 5.044 15 N -0.125 5.125 16 C 0.149 3.851 17 C -0.573 4.573 18 H 0.079 0.921 19 C -0.136 4.136 20 N -0.529 5.529 21 Si 0.734 3.266 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.200 1.200 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.166 0.834 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.887 -11.774 -1.477 18.266 hybrid contribution -0.740 -0.447 1.058 1.367 sum -14.627 -12.221 -0.419 19.065 Atomic orbital electron populations 1.23273 0.76001 1.03671 1.02692 1.86551 1.23462 1.32761 1.84323 1.21256 0.89052 0.81494 0.73101 1.90894 1.67270 1.34474 1.44480 1.18662 0.88724 0.92823 1.02035 1.21938 0.94160 0.98342 1.04128 1.21122 0.90922 0.92377 0.93444 1.20745 0.99930 0.92203 1.03023 1.66260 1.40783 0.96340 1.14057 1.18945 0.88248 0.87765 0.97727 1.19189 0.94114 0.93868 1.12731 1.22259 0.96564 0.89393 1.01298 1.20506 0.86986 1.00591 1.03590 1.76890 0.90724 1.19399 1.17352 1.49575 1.07319 1.00045 1.55610 1.19787 0.69712 0.96426 0.99157 1.21228 0.99460 1.44459 0.92202 0.92066 1.24891 0.95933 0.94881 0.97905 1.69910 1.08255 1.44545 1.30229 0.86404 0.77705 0.78964 0.83532 1.19978 1.20862 1.19976 0.88075 0.91747 0.91777 0.83397 0.90124 0.89925 0.90417 0.90540 0.92273 0.88588 0.92281 0.92732 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.95 9.94 -40.58 -0.40 -4.35 16 3 C 0.51 7.11 7.90 34.62 0.27 7.38 16 4 O -0.48 -7.22 10.85 -19.23 -0.21 -7.43 16 5 C -0.01 -0.17 5.93 -104.43 -0.62 -0.79 16 6 C -0.16 -2.28 9.30 -39.00 -0.36 -2.64 16 7 C 0.17 2.74 6.77 -82.59 -0.56 2.18 16 8 C -0.10 -1.13 10.14 36.01 0.37 -0.77 16 9 N -0.46 -9.52 10.25 -8.59 -0.09 -9.61 16 10 C 0.32 7.12 8.00 -156.07 -1.25 5.87 16 11 C -0.19 -3.72 6.01 -106.62 -0.64 -4.37 16 12 C 0.08 1.57 7.22 -82.18 -0.59 0.97 16 13 C -0.06 -0.94 8.39 36.01 0.30 -0.64 16 14 N -0.23 -5.24 12.44 33.83 0.42 -4.81 16 15 N -0.34 -8.39 3.65 -61.57 -0.22 -8.62 16 16 C 0.27 7.19 6.20 -5.19 -0.03 7.15 16 17 C -0.53 -15.42 9.39 -34.45 -0.32 -15.74 16 18 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 19 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 20 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 21 Si 0.91 21.79 29.54 -169.99 -5.02 16.76 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.15 1.51 7.72 -52.49 -0.41 1.10 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.08 1.19 7.60 -51.93 -0.39 0.79 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.46 5.65 -52.33 -0.30 1.16 16 35 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.05 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -32.69 322.86 -6.83 -39.53 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.44 Total: -2.99 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -2.47 Total: 1.78 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.84 Total: -48.16 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.61 Total: -11.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.69 -6.83 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012396269.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.983 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds