Wall clock time and date at job start Tue Mar 31 2020 02:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34731 * 117.00040 * 2 1 4 4 O 1.21461 * 119.99671 * 0.02562 * 3 2 1 5 5 C 1.47744 * 120.00069 * 180.02562 * 3 2 1 6 6 C 1.39391 * 121.09750 * 352.78122 * 5 3 2 7 7 C 1.38640 * 119.35776 * 180.22995 * 6 5 3 8 8 C 1.50709 * 119.16100 * 179.74419 * 7 6 5 9 9 N 1.31480 * 121.68037 * 359.44248 * 7 6 5 10 10 C 1.32500 * 121.98520 * 0.60648 * 9 7 6 11 11 C 1.40980 * 120.21941 * 359.66283 * 10 9 7 12 12 C 1.41092 * 107.12821 * 180.02562 * 11 10 9 13 13 C 1.50705 * 125.70082 * 179.97438 * 12 11 10 14 14 N 1.30245 * 108.59494 * 0.02562 * 12 11 10 15 15 N 1.37088 * 133.44858 * 179.71050 * 10 9 7 16 16 C 1.46502 * 125.90489 * 0.02562 * 15 10 9 17 17 C 1.50697 * 109.47649 * 269.97668 * 16 15 10 18 18 H 1.08001 * 119.99654 * 359.97438 * 17 16 15 19 19 C 1.37867 * 120.00349 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00148 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00093 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47301 * 59.99871 * 21 19 17 23 23 H 1.48507 * 109.47091 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47249 * 299.99762 * 21 19 17 25 25 H 1.09000 * 109.47330 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47130 * 299.99748 * 1 2 3 27 27 H 1.08998 * 109.47383 * 59.99718 * 1 2 3 28 28 H 1.08000 * 120.31666 * 359.95668 * 6 5 3 29 29 H 1.09003 * 109.46802 * 90.00339 * 8 7 6 30 30 H 1.08995 * 109.47578 * 210.00052 * 8 7 6 31 31 H 1.09001 * 109.46995 * 330.00585 * 8 7 6 32 32 H 1.08998 * 109.47017 * 76.55837 * 13 12 11 33 33 H 1.09002 * 109.47068 * 196.56115 * 13 12 11 34 34 H 1.08999 * 109.46967 * 316.56355 * 13 12 11 35 35 H 1.09003 * 109.47302 * 29.97824 * 16 15 10 36 36 H 1.09005 * 109.47146 * 149.97362 * 16 15 10 37 37 H 0.96997 * 119.99995 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4021 2.2191 0.0005 5 6 3.5391 1.2778 -0.0006 6 6 4.3201 0.1329 0.1489 7 6 5.7017 0.2478 0.1479 8 6 6.5418 -0.9922 0.3156 9 7 6.2979 1.4101 -0.0015 10 6 5.6144 2.5358 -0.1473 11 6 4.2048 2.5145 -0.1530 12 6 3.7698 3.8457 -0.3238 13 6 2.3344 4.3002 -0.3904 14 7 4.8160 4.6161 -0.4155 15 7 5.9808 3.8467 -0.3110 16 6 7.3539 4.3542 -0.3684 17 6 7.8178 4.7067 1.0213 18 1 7.1559 4.5671 1.8632 19 6 9.0868 5.2085 1.2180 20 7 9.8924 5.3800 0.1926 21 14 9.6616 5.6461 2.9407 22 1 9.6173 4.4357 3.7997 23 1 11.0535 6.1605 2.8824 24 1 8.7711 6.6896 3.5095 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.8533 -0.8336 0.2687 29 1 6.7545 -1.4220 -0.6633 30 1 7.4780 -0.7327 0.8096 31 1 6.0003 -1.7186 0.9216 32 1 1.9093 4.3091 0.6132 33 1 2.2904 5.3042 -0.8126 34 1 1.7655 3.6160 -1.0198 35 1 8.0073 3.5883 -0.7862 36 1 7.3867 5.2429 -0.9988 37 1 10.7853 5.7327 0.3310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012396269.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:58 Heat of formation + Delta-G solvation = 4.512929 kcal Electronic energy + Delta-G solvation = -22734.710111 eV Core-core repulsion = 19285.520981 eV Total energy + Delta-G solvation = -3449.189130 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.92807 -41.27296 -39.45633 -37.63381 -36.02699 -34.60924 -33.32833 -32.72107 -30.68084 -28.91336 -28.35144 -27.83574 -25.77611 -24.69082 -23.18743 -22.36549 -20.50761 -18.96560 -18.82963 -18.53790 -18.27890 -17.53722 -17.29775 -16.66070 -16.49543 -15.69082 -15.12004 -14.91186 -14.85206 -14.67988 -14.40723 -14.18608 -13.85256 -13.60061 -13.52060 -13.30407 -13.11358 -12.96015 -12.84495 -12.72744 -12.51534 -12.33203 -11.97706 -11.91740 -11.71204 -11.44496 -11.28349 -10.78741 -10.48270 -9.85176 -9.28389 -8.37332 -6.55752 -0.80515 0.11695 1.14501 1.25594 1.33351 1.35729 1.45651 1.54762 1.64798 2.29531 2.65898 2.91053 3.13275 3.34553 3.42424 3.62228 3.78420 4.16917 4.26851 4.38430 4.40277 4.45418 4.62818 4.72141 4.76658 4.80741 4.84140 4.85481 4.89443 4.94065 5.06271 5.12752 5.33758 5.41252 5.48798 5.62872 5.74372 5.90957 6.49322 6.53303 6.65260 6.95184 7.14559 8.69542 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.004743 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.231355 B = 5901.511211 C = 6700.549014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.346 6.346 3 C 0.513 3.487 4 O -0.496 6.496 5 C -0.014 4.014 6 C -0.137 4.137 7 C 0.179 3.821 8 C -0.100 4.100 9 N -0.509 5.509 10 C 0.290 3.710 11 C -0.210 4.210 12 C 0.088 3.912 13 C -0.050 4.050 14 N -0.274 5.274 15 N -0.373 5.373 16 C 0.288 3.712 17 C -0.556 4.556 18 H 0.044 0.956 19 C 0.021 3.979 20 N -0.919 5.919 21 Si 0.976 3.024 22 H -0.269 1.269 23 H -0.267 1.267 24 H -0.271 1.271 25 H 0.137 0.863 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.200 0.800 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.037 0.963 36 H 0.029 0.971 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.363 -16.683 -0.010 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.262 6.262 3 C 0.358 3.642 4 O -0.385 6.385 5 C -0.026 4.026 6 C -0.158 4.158 7 C 0.027 3.973 8 C -0.157 4.157 9 N -0.225 5.225 10 C 0.049 3.951 11 C -0.221 4.221 12 C -0.085 4.085 13 C -0.107 4.107 14 N -0.092 5.092 15 N -0.160 5.160 16 C 0.169 3.831 17 C -0.594 4.594 18 H 0.063 0.937 19 C -0.179 4.179 20 N -0.557 5.557 21 Si 0.799 3.201 22 H -0.194 1.194 23 H -0.191 1.191 24 H -0.196 1.196 25 H 0.155 0.845 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.217 0.783 29 H 0.121 0.879 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.914 -14.869 -0.267 21.780 hybrid contribution -0.280 0.217 0.647 0.737 sum -16.193 -14.651 0.379 21.841 Atomic orbital electron populations 1.23669 0.73563 1.06153 1.02960 1.86523 1.25604 1.30553 1.83524 1.20806 0.88026 0.82321 0.73024 1.90872 1.67278 1.35267 1.45094 1.18960 0.90630 0.91950 1.01049 1.22498 0.93161 0.99638 1.00551 1.22130 0.92693 0.92156 0.90311 1.20972 0.99140 0.90727 1.04893 1.66325 1.42309 0.97287 1.16606 1.19270 0.89793 0.87447 0.98599 1.19354 0.93238 0.95196 1.14320 1.22958 0.97356 0.89654 0.98549 1.20613 0.84448 1.01338 1.04343 1.76795 0.91063 1.20616 1.20704 1.49180 1.06677 1.01505 1.58616 1.19135 0.71612 0.94509 0.97836 1.21358 0.99998 1.45594 0.92443 0.93744 1.25798 0.95650 0.94202 1.02299 1.70006 1.08691 1.44592 1.32367 0.85354 0.77810 0.78798 0.78183 1.19376 1.19095 1.19605 0.84495 0.91577 0.91512 0.78295 0.87948 0.91368 0.86079 0.89728 0.91399 0.87240 0.94562 0.95302 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.35 -6.19 9.94 -56.41 -0.56 -6.75 16 3 C 0.51 12.93 7.90 70.34 0.56 13.48 16 4 O -0.50 -13.69 10.85 19.96 0.22 -13.47 16 5 C -0.01 -0.43 5.93 -19.74 -0.12 -0.54 16 6 C -0.14 -3.34 9.30 22.64 0.21 -3.13 16 7 C 0.18 5.30 6.77 42.71 0.29 5.59 16 8 C -0.10 -1.90 10.14 71.24 0.72 -1.18 16 9 N -0.51 -21.66 10.25 -181.09 -1.86 -23.52 16 10 C 0.29 13.70 8.00 134.13 1.07 14.77 16 11 C -0.21 -8.48 6.01 -21.16 -0.13 -8.61 16 12 C 0.09 3.67 7.22 43.50 0.31 3.99 16 13 C -0.05 -1.57 8.39 71.24 0.60 -0.97 16 14 N -0.27 -13.60 12.44 -46.89 -0.58 -14.18 16 15 N -0.37 -19.87 3.65 -348.72 -1.27 -21.15 16 16 C 0.29 16.88 6.20 85.63 0.53 17.41 16 17 C -0.56 -33.92 9.39 25.60 0.24 -33.68 16 18 H 0.04 2.79 7.81 -2.91 -0.02 2.77 16 19 C 0.02 1.25 5.46 84.65 0.46 1.71 16 20 N -0.92 -55.09 13.29 21.44 0.28 -54.81 16 21 Si 0.98 45.49 29.54 68.60 2.03 47.52 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.20 2.78 7.72 -2.91 -0.02 2.76 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.12 1.28 8.07 -2.39 -0.02 1.26 16 32 H 0.08 2.55 7.60 -2.39 -0.02 2.54 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 3.19 5.65 -8.79 -0.05 3.14 16 35 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.03 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -77.49 322.86 5.27 -72.22 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.06 Total: 3.78 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 5.95 Total: 10.37 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -3.43 Total: -113.66 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.34 Total: -20.23 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -77.49 5.27 -72.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012396269.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.734 kcal (2) G-P(sol) polarization free energy of solvation -77.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds