Wall clock time and date at job start Tue Mar 31 2020 02:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47542 * 321.48476 * 3 2 1 5 5 N 1.46500 * 109.47361 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99726 * 269.99556 * 5 4 3 7 7 C 1.50690 * 109.47303 * 270.00284 * 6 5 4 8 8 H 1.08006 * 120.00337 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00195 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99476 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00438 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47071 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47135 * 119.99487 * 11 9 7 14 14 H 1.48498 * 109.47098 * 239.99923 * 11 9 7 15 15 C 1.34778 * 120.00035 * 90.00374 * 5 4 3 16 16 O 1.21273 * 119.99772 * 180.02562 * 15 5 4 17 17 C 1.50695 * 119.99864 * 359.97438 * 15 5 4 18 18 N 1.46507 * 109.47098 * 180.02562 * 17 15 5 19 19 C 1.35763 * 119.62574 * 89.99849 * 18 17 15 20 20 C 1.35346 * 120.69997 * 180.27933 * 19 18 17 21 21 C 1.40202 * 119.94860 * 359.43664 * 20 19 18 22 22 C 1.36395 * 119.26120 * 0.57668 * 21 20 19 23 23 C 1.34664 * 119.61981 * 270.02248 * 18 17 15 24 24 O 1.22055 * 119.98569 * 359.97438 * 23 18 17 25 25 H 1.09000 * 109.46984 * 201.48596 * 3 2 1 26 26 H 1.08995 * 109.47554 * 81.48761 * 3 2 1 27 27 H 1.09000 * 109.46883 * 60.00058 * 4 3 2 28 28 H 1.09009 * 109.47046 * 300.00713 * 4 3 2 29 29 H 1.09001 * 109.46822 * 30.00326 * 6 5 4 30 30 H 1.08998 * 109.46560 * 150.00099 * 6 5 4 31 31 H 0.96992 * 119.99425 * 179.97438 * 10 9 7 32 32 H 1.08991 * 109.47470 * 60.00573 * 17 15 5 33 33 H 1.09001 * 109.47078 * 300.00121 * 17 15 5 34 34 H 1.08002 * 119.64669 * 359.97438 * 19 18 17 35 35 H 1.07996 * 120.02410 * 179.69320 * 20 19 18 36 36 H 1.08002 * 120.36615 * 180.31976 * 21 20 19 37 37 H 1.08002 * 120.34395 * 179.74309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.1277 0.8982 5 7 4.5836 -1.1267 0.8987 6 6 5.3169 -1.9162 -0.0939 7 6 5.5689 -3.2986 0.4504 8 1 5.2182 -3.5627 1.4372 9 6 6.2480 -4.2261 -0.3110 10 7 6.6754 -3.9043 -1.5125 11 14 6.5610 -5.9395 0.3639 12 1 5.9836 -6.0474 1.7278 13 1 5.9248 -6.9452 -0.5244 14 1 8.0237 -6.1879 0.4250 15 6 5.2567 -0.3995 1.8123 16 8 6.4694 -0.3983 1.8124 17 6 4.5023 0.4128 2.8330 18 7 5.4535 1.1072 3.7045 19 6 5.8888 2.3485 3.3685 20 6 6.7718 3.0074 4.1548 21 6 7.2368 2.4124 5.3360 22 6 6.7986 1.1651 5.6716 23 6 5.8864 0.5066 4.8293 24 8 5.4858 -0.6096 5.1179 25 1 2.9709 0.9571 0.3764 26 1 2.9714 -0.1513 -1.0163 27 1 2.7557 -2.0842 0.5218 28 1 2.7551 -0.9758 1.9146 29 1 4.7281 -1.9874 -1.0084 30 1 6.2690 -1.4322 -0.3115 31 1 7.1535 -4.5567 -2.0479 32 1 3.8757 -0.2477 3.4321 33 1 3.8755 1.1449 2.3236 34 1 5.5305 2.8130 2.4618 35 1 7.1146 3.9924 3.8745 36 1 7.9374 2.9342 5.9710 37 1 7.1487 0.6886 6.5754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047831707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:11 Heat of formation + Delta-G solvation = -26.411834 kcal Electronic energy + Delta-G solvation = -22555.774499 eV Core-core repulsion = 19105.244370 eV Total energy + Delta-G solvation = -3450.530129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.41531 -40.52848 -38.02618 -37.87965 -36.75865 -35.48159 -34.84014 -32.19837 -30.87579 -30.30629 -28.40921 -25.36333 -25.14159 -24.52286 -23.44575 -20.36349 -18.92917 -18.62671 -18.39482 -18.19994 -18.07636 -17.33121 -16.93522 -16.39764 -16.05619 -15.92288 -15.69960 -15.25898 -15.00020 -14.78138 -14.43611 -14.33650 -13.65306 -13.55954 -13.47680 -13.20289 -13.16191 -12.95565 -12.90865 -12.72834 -12.66556 -12.56999 -12.23943 -11.86528 -11.70121 -11.38764 -11.01555 -10.62693 -10.55815 -9.56608 -8.89217 -8.23558 -6.34434 -0.00739 1.01853 1.33329 1.36820 1.46815 1.56264 1.62070 1.80774 1.87565 2.27877 2.39917 2.78212 3.07338 3.14739 3.61219 3.74160 3.85526 3.98269 4.07815 4.11505 4.22279 4.30157 4.43500 4.55023 4.61535 4.84451 5.02432 5.04542 5.15079 5.25251 5.29284 5.45287 5.54571 5.73982 5.81756 6.08850 6.14348 6.59703 6.65519 6.75473 7.04639 7.25463 7.40000 8.83119 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.005740 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.678230 B = 4876.490213 C = 6622.280587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.245 3.755 3 C -0.035 4.035 4 C 0.106 3.894 5 N -0.591 5.591 6 C 0.262 3.738 7 C -0.544 4.544 8 H 0.042 0.958 9 C 0.017 3.983 10 N -0.920 5.920 11 Si 0.951 3.049 12 H -0.277 1.277 13 H -0.267 1.267 14 H -0.283 1.283 15 C 0.491 3.509 16 O -0.580 6.580 17 C 0.072 3.928 18 N -0.481 5.481 19 C 0.135 3.865 20 C -0.233 4.233 21 C 0.009 3.991 22 C -0.289 4.289 23 C 0.494 3.506 24 O -0.616 6.616 25 H 0.149 0.851 26 H 0.125 0.875 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.044 0.956 30 H 0.008 0.992 31 H 0.267 0.733 32 H 0.121 0.879 33 H 0.182 0.818 34 H 0.205 0.795 35 H 0.187 0.813 36 H 0.169 0.831 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.274 19.166 6.998 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.072 4.072 3 C -0.076 4.076 4 C -0.019 4.019 5 N -0.321 5.321 6 C 0.141 3.859 7 C -0.582 4.582 8 H 0.061 0.939 9 C -0.183 4.183 10 N -0.560 5.560 11 Si 0.777 3.223 12 H -0.202 1.202 13 H -0.192 1.192 14 H -0.209 1.209 15 C 0.278 3.722 16 O -0.460 6.460 17 C -0.052 4.052 18 N -0.189 5.189 19 C 0.009 3.991 20 C -0.255 4.255 21 C -0.013 4.013 22 C -0.310 4.310 23 C 0.299 3.701 24 O -0.504 6.504 25 H 0.166 0.834 26 H 0.143 0.857 27 H 0.102 0.898 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.199 0.801 34 H 0.222 0.778 35 H 0.204 0.796 36 H 0.187 0.813 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.536 18.367 6.979 20.413 hybrid contribution 0.956 -1.748 0.173 2.000 sum -4.580 16.619 7.151 18.663 Atomic orbital electron populations 1.81276 1.14611 1.10417 1.10624 1.29167 0.94978 0.91543 0.91502 1.19841 0.79898 1.02777 1.05061 1.21619 0.78662 0.99924 1.01651 1.48032 1.06956 1.45210 1.31934 1.18837 0.91743 0.88406 0.86939 1.21764 1.36531 0.98444 1.01505 0.93922 1.25615 0.95169 1.02334 0.95183 1.69995 1.38967 1.36363 1.10699 0.85618 0.77862 0.80419 0.78446 1.20230 1.19168 1.20901 1.21251 0.88017 0.80663 0.82253 1.90707 1.16314 1.66045 1.72890 1.22158 0.91479 0.99601 0.91998 1.45147 1.37956 1.15748 1.20094 1.22829 0.93733 0.82633 0.99881 1.21204 1.02800 1.04471 0.97033 1.21886 0.92754 0.91865 0.94796 1.22073 1.05764 0.99387 1.03788 1.17719 0.83903 0.86396 0.82069 1.90916 1.62302 1.21733 1.75478 0.83377 0.85690 0.89790 0.87951 0.93811 0.97398 0.92423 0.86072 0.80134 0.77784 0.79612 0.81316 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.69 18.54 20.00 0.37 -12.32 16 2 C 0.25 4.66 15.43 89.44 1.38 6.04 16 3 C -0.03 -0.49 6.03 28.79 0.17 -0.32 16 4 C 0.11 2.43 5.17 86.38 0.45 2.88 16 5 N -0.59 -20.65 2.46 -826.17 -2.03 -22.68 16 6 C 0.26 12.48 5.16 85.63 0.44 12.92 16 7 C -0.54 -30.35 9.39 25.60 0.24 -30.11 16 8 H 0.04 2.47 7.81 -2.91 -0.02 2.45 16 9 C 0.02 0.94 5.46 84.66 0.46 1.40 16 10 N -0.92 -53.45 13.29 21.45 0.28 -53.17 16 11 Si 0.95 45.44 29.54 68.60 2.03 47.47 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 15 C 0.49 17.57 7.74 87.66 0.68 18.25 16 16 O -0.58 -27.72 16.01 -3.01 -0.05 -27.77 16 17 C 0.07 1.70 4.37 85.63 0.37 2.07 16 18 N -0.48 -12.48 2.07 -655.07 -1.36 -13.84 16 19 C 0.14 2.17 10.28 83.42 0.86 3.03 16 20 C -0.23 -3.11 10.01 22.08 0.22 -2.89 16 21 C 0.01 0.15 10.10 22.32 0.23 0.37 16 22 C -0.29 -7.78 9.99 22.40 0.22 -7.56 16 23 C 0.49 17.02 7.40 84.82 0.63 17.65 16 24 O -0.62 -27.63 16.64 -5.49 -0.09 -27.72 16 25 H 0.15 0.88 7.22 -2.39 -0.02 0.86 16 26 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 28 H 0.10 1.85 6.44 -2.38 -0.02 1.84 16 29 H 0.04 2.02 8.07 -2.39 -0.02 2.00 16 30 H 0.01 0.44 7.42 -2.39 -0.02 0.42 16 31 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.12 3.06 6.65 -2.39 -0.02 3.04 16 33 H 0.18 1.65 7.05 -2.39 -0.02 1.64 16 34 H 0.21 1.27 8.04 -2.91 -0.02 1.25 16 35 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -92.19 333.78 6.60 -85.59 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: 1.09 Total: 0.68 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 6.35 Total: 23.75 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -2.73 Total: -102.00 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -0.14 Total: -55.49 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -92.19 6.60 -85.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047831707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.177 kcal (2) G-P(sol) polarization free energy of solvation -92.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds