Wall clock time and date at job start Tue Mar 31 2020 02:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 119.99719 * 2 1 4 4 H 1.48500 * 109.47430 * 270.00111 * 3 2 1 5 5 H 1.48493 * 109.47213 * 30.00804 * 3 2 1 6 6 H 1.48507 * 109.46587 * 150.00244 * 3 2 1 7 7 C 1.38950 * 120.00443 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00364 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99295 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99664 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99743 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00114 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47082 * 187.18806 * 12 10 9 14 14 C 1.40041 * 111.00435 * 315.53564 * 13 12 10 15 15 C 1.39405 * 129.94553 * 283.75372 * 14 13 12 16 16 C 1.37910 * 120.19558 * 179.75375 * 15 14 13 17 17 C 1.38301 * 120.26669 * 359.97438 * 16 15 14 18 18 C 1.38304 * 119.88736 * 0.10079 * 17 16 15 19 19 C 1.37917 * 120.07277 * 0.02562 * 18 17 16 20 20 C 1.51582 * 131.55959 * 179.63491 * 19 18 17 21 21 C 1.47902 * 111.00174 * 75.54762 * 13 12 10 22 22 H 1.08997 * 110.77896 * 146.85882 * 21 13 12 23 23 C 1.50703 * 110.77469 * 23.61996 * 21 13 12 24 24 N 1.34775 * 119.99846 * 116.32331 * 23 21 13 25 25 O 1.21276 * 119.99985 * 296.04498 * 23 21 13 26 26 H 0.97001 * 120.00157 * 359.97438 * 1 2 3 27 27 H 0.96997 * 120.00621 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.46703 * 67.19193 * 12 10 9 29 29 H 1.08995 * 109.46965 * 307.18952 * 12 10 9 30 30 H 1.07993 * 119.89964 * 359.71297 * 15 14 13 31 31 H 1.08001 * 119.86507 * 179.97438 * 16 15 14 32 32 H 1.08007 * 120.05699 * 180.02562 * 17 16 15 33 33 H 1.07995 * 119.96279 * 179.97438 * 18 17 16 34 34 H 1.09000 * 110.74257 * 77.96941 * 20 19 18 35 35 H 1.08996 * 110.74435 * 314.62844 * 20 19 18 36 36 H 0.97004 * 120.00009 * 179.71831 * 24 23 21 37 37 H 0.97000 * 120.00273 * 359.72712 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1889 -5.9740 0.1723 14 6 3.3185 -5.8032 -0.6377 15 6 3.4736 -5.9959 -2.0096 16 6 4.6924 -5.7593 -2.6099 17 6 5.7689 -5.3289 -1.8558 18 6 5.6236 -5.1368 -0.4939 19 6 4.4075 -5.3745 0.1116 20 6 3.9641 -5.2595 1.5566 21 6 2.6457 -6.0672 1.5759 22 1 2.8281 -7.1049 1.8551 23 6 1.6445 -5.4333 2.5071 24 7 1.0081 -6.1864 3.4259 25 8 1.4153 -4.2448 2.4329 26 1 -0.4850 0.8400 0.0004 27 1 0.3534 -2.3907 -0.0005 28 1 0.7175 -4.9781 -0.9487 29 1 0.5239 -4.8672 0.8172 30 1 2.6370 -6.3322 -2.6039 31 1 4.8067 -5.9108 -3.6731 32 1 6.7219 -5.1442 -2.3295 33 1 6.4635 -4.8011 0.0961 34 1 3.7831 -4.2182 1.8231 35 1 4.7008 -5.7074 2.2233 36 1 0.3667 -5.7776 4.0280 37 1 1.1915 -7.1370 3.4854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066497146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:48 Heat of formation + Delta-G solvation = 9.720089 kcal Electronic energy + Delta-G solvation = -24080.187161 eV Core-core repulsion = 20631.223830 eV Total energy + Delta-G solvation = -3448.963331 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41990 -38.77884 -37.54254 -35.72281 -33.70754 -33.55985 -32.11895 -31.00889 -29.46403 -28.84243 -26.37748 -24.25001 -23.89538 -21.13291 -20.84867 -20.19279 -19.02382 -17.74683 -17.26887 -17.02607 -16.27432 -15.94182 -15.61220 -14.85706 -14.51842 -14.38298 -14.09421 -13.88569 -13.28448 -13.12513 -12.99668 -12.61507 -12.39698 -12.31301 -11.96684 -11.43734 -11.33255 -11.11418 -11.01233 -10.62933 -10.40867 -10.31456 -10.11003 -9.77026 -9.49698 -9.33435 -9.19483 -8.61745 -8.09508 -7.77978 -6.82012 -6.28570 -3.67227 1.94460 2.10351 2.59702 3.23902 3.31383 3.37649 3.49954 4.05090 4.07785 4.27482 4.40337 4.81232 5.05281 5.11887 5.21684 5.35618 5.38434 5.53858 5.56628 5.73003 5.90201 5.96673 6.04773 6.16121 6.31895 6.39484 6.51781 6.67814 6.82695 6.85427 6.97930 7.09265 7.17005 7.28376 7.34899 7.66169 7.77008 8.17779 8.35555 8.75417 9.30687 9.70373 10.21190 10.88849 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.007096 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.987199 B = 3945.030231 C = 5103.296639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.020 3.980 3 Si 0.927 3.073 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.287 4.287 8 H 0.100 0.900 9 N -0.550 5.550 10 C 0.434 3.566 11 O -0.577 6.577 12 C 0.025 3.975 13 N -0.455 5.455 14 C 0.096 3.904 15 C -0.111 4.111 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.115 4.115 19 C -0.020 4.020 20 C -0.091 4.091 21 C 0.055 3.945 22 H 0.106 0.894 23 C 0.512 3.488 24 N -0.853 5.853 25 O -0.501 6.501 26 H 0.269 0.731 27 H 0.389 0.611 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.401 0.599 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.474 -15.227 3.108 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.754 3.246 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.417 4.417 8 H 0.117 0.883 9 N -0.184 5.184 10 C 0.220 3.780 11 O -0.464 6.464 12 C -0.104 4.104 13 N -0.174 5.174 14 C 0.001 3.999 15 C -0.131 4.131 16 C -0.148 4.148 17 C -0.143 4.143 18 C -0.134 4.134 19 C -0.022 4.022 20 C -0.129 4.129 21 C -0.056 4.056 22 H 0.123 0.877 23 C 0.295 3.705 24 N -0.418 5.418 25 O -0.374 6.374 26 H 0.079 0.921 27 H 0.222 0.778 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.232 0.768 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.781 -14.696 2.800 15.431 hybrid contribution -0.191 1.407 0.530 1.516 sum 3.590 -13.289 3.330 14.162 Atomic orbital electron populations 1.69621 1.05873 1.27795 1.51176 1.25220 0.95574 0.99538 0.97776 0.85913 0.79210 0.81241 0.78211 1.20569 1.21050 1.19619 1.19629 0.93129 0.82378 1.46602 0.88252 1.41780 1.08937 1.04536 1.63192 1.20314 0.88493 0.85519 0.83703 1.90531 1.13264 1.85622 1.56989 1.22496 0.95377 0.88692 1.03845 1.60941 1.13514 1.40458 1.02530 1.19115 0.89640 0.98016 0.93136 1.20165 0.97655 1.03451 0.91780 1.20581 0.92943 1.02422 0.98842 1.20786 0.98350 1.01546 0.93623 1.20059 0.96085 1.02696 0.94575 1.20286 0.93698 0.93240 0.94969 1.21860 0.93727 1.03118 0.94173 1.22733 0.94180 1.00284 0.88420 0.87651 1.20411 0.81603 0.87254 0.81188 1.43882 1.46621 1.12880 1.38446 1.90968 1.62946 1.14604 1.68835 0.92120 0.77796 0.89313 0.88140 0.87045 0.86771 0.86959 0.87340 0.86506 0.91409 0.76820 0.77229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 13.05 55.50 0.72 -25.18 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.29 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -14.79 5.29 -10.96 -0.06 -14.85 16 10 C 0.43 10.54 5.20 -10.99 -0.06 10.49 16 11 O -0.58 -14.84 8.84 5.54 0.05 -14.79 16 12 C 0.02 0.49 5.53 -4.98 -0.03 0.46 16 13 N -0.46 -7.91 5.32 -164.21 -0.87 -8.79 16 14 C 0.10 1.79 4.23 -83.40 -0.35 1.44 16 15 C -0.11 -1.94 10.07 -39.27 -0.40 -2.34 16 16 C -0.13 -2.10 10.02 -39.68 -0.40 -2.50 16 17 C -0.12 -2.04 10.06 -39.53 -0.40 -2.44 16 18 C -0.12 -2.05 10.01 -39.67 -0.40 -2.44 16 19 C -0.02 -0.37 3.83 -104.04 -0.40 -0.77 16 20 C -0.09 -1.59 5.66 -26.59 -0.15 -1.74 16 21 C 0.05 0.83 3.78 -67.46 -0.25 0.58 16 22 H 0.11 1.21 7.99 -51.93 -0.42 0.79 16 23 C 0.51 7.86 5.88 -10.98 -0.06 7.79 16 24 N -0.85 -8.41 8.87 31.22 0.28 -8.13 16 25 O -0.50 -10.36 13.04 5.56 0.07 -10.29 16 26 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.39 10.38 7.90 -40.82 -0.32 10.06 16 28 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 29 H 0.10 1.92 5.22 -51.93 -0.27 1.65 16 30 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 33 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.12 2.56 5.74 -51.93 -0.30 2.27 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.40 3.61 8.93 -40.82 -0.36 3.24 16 37 H 0.40 2.52 8.72 -40.82 -0.36 2.17 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -34.50 303.22 -7.47 -41.97 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -4.07 Total: 17.86 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -3.13 Total: 0.47 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.07 Total: -56.94 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.12 Total: -25.08 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.50 -7.47 -41.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.690 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds