Wall clock time and date at job start Tue Mar 31 2020 02:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 119.99719 * 2 1 4 4 H 1.48500 * 109.47430 * 270.00111 * 3 2 1 5 5 H 1.48493 * 109.47213 * 30.00804 * 3 2 1 6 6 H 1.48507 * 109.46587 * 150.00244 * 3 2 1 7 7 C 1.38950 * 120.00443 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00364 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99295 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99664 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99743 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00114 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47082 * 187.18806 * 12 10 9 14 14 C 1.40041 * 111.00435 * 315.53564 * 13 12 10 15 15 C 1.39405 * 129.94553 * 283.75372 * 14 13 12 16 16 C 1.37910 * 120.19558 * 179.75375 * 15 14 13 17 17 C 1.38301 * 120.26669 * 359.97438 * 16 15 14 18 18 C 1.38304 * 119.88736 * 0.10079 * 17 16 15 19 19 C 1.37917 * 120.07277 * 0.02562 * 18 17 16 20 20 C 1.51582 * 131.55959 * 179.63491 * 19 18 17 21 21 C 1.47902 * 111.00174 * 75.54762 * 13 12 10 22 22 H 1.08997 * 110.77896 * 146.85882 * 21 13 12 23 23 C 1.50703 * 110.77469 * 23.61996 * 21 13 12 24 24 N 1.34775 * 119.99846 * 116.32331 * 23 21 13 25 25 O 1.21276 * 119.99985 * 296.04498 * 23 21 13 26 26 H 0.97001 * 120.00157 * 359.97438 * 1 2 3 27 27 H 0.96997 * 120.00621 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.46703 * 67.19193 * 12 10 9 29 29 H 1.08995 * 109.46965 * 307.18952 * 12 10 9 30 30 H 1.07993 * 119.89964 * 359.71297 * 15 14 13 31 31 H 1.08001 * 119.86507 * 179.97438 * 16 15 14 32 32 H 1.08007 * 120.05699 * 180.02562 * 17 16 15 33 33 H 1.07995 * 119.96279 * 179.97438 * 18 17 16 34 34 H 1.09000 * 110.74257 * 77.96941 * 20 19 18 35 35 H 1.08996 * 110.74435 * 314.62844 * 20 19 18 36 36 H 0.97004 * 120.00009 * 179.71831 * 24 23 21 37 37 H 0.97000 * 120.00273 * 359.72712 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1889 -5.9740 0.1723 14 6 3.3185 -5.8032 -0.6377 15 6 3.4736 -5.9959 -2.0096 16 6 4.6924 -5.7593 -2.6099 17 6 5.7689 -5.3289 -1.8558 18 6 5.6236 -5.1368 -0.4939 19 6 4.4075 -5.3745 0.1116 20 6 3.9641 -5.2595 1.5566 21 6 2.6457 -6.0672 1.5759 22 1 2.8281 -7.1049 1.8551 23 6 1.6445 -5.4333 2.5071 24 7 1.0081 -6.1864 3.4259 25 8 1.4153 -4.2448 2.4329 26 1 -0.4850 0.8400 0.0004 27 1 0.3534 -2.3907 -0.0005 28 1 0.7175 -4.9781 -0.9487 29 1 0.5239 -4.8672 0.8172 30 1 2.6370 -6.3322 -2.6039 31 1 4.8067 -5.9108 -3.6731 32 1 6.7219 -5.1442 -2.3295 33 1 6.4635 -4.8011 0.0961 34 1 3.7831 -4.2182 1.8231 35 1 4.7008 -5.7074 2.2233 36 1 0.3667 -5.7776 4.0280 37 1 1.1915 -7.1370 3.4854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066497146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:48 Heat of formation + Delta-G solvation = -18.701261 kcal Electronic energy + Delta-G solvation = -24081.419603 eV Core-core repulsion = 20631.223830 eV Total energy + Delta-G solvation = -3450.195773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.81054 -40.06877 -39.33365 -37.13690 -35.69345 -34.71257 -33.63609 -32.93222 -30.88481 -30.11967 -28.05563 -26.14553 -25.18686 -22.53582 -22.19752 -21.58853 -20.65089 -19.79215 -18.36120 -18.30658 -17.94256 -17.27281 -17.07876 -16.59215 -15.97334 -15.94631 -15.65524 -15.59701 -14.89303 -14.66630 -14.39414 -14.08186 -13.68080 -13.66890 -13.61564 -13.34393 -12.98894 -12.75356 -12.38852 -12.31463 -12.17059 -12.14794 -11.70200 -11.34234 -11.06700 -10.74947 -10.56022 -10.23476 -9.85201 -9.44971 -8.46980 -8.29875 -5.86837 0.58708 0.75561 1.34261 1.35644 1.37772 1.49050 2.17222 2.29625 2.42022 2.74301 3.08473 3.25669 3.34373 3.65044 3.84202 4.02903 4.16892 4.23779 4.28606 4.34614 4.46511 4.54466 4.57787 4.72824 4.85090 4.99957 5.07838 5.28550 5.42463 5.49784 5.64115 5.77471 5.84297 5.89304 5.91189 6.04525 6.42183 6.45376 6.66527 7.19664 7.33489 7.66474 8.21747 8.76773 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.007096 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.987199 B = 3945.030231 C = 5103.296639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.021 4.021 3 Si 0.990 3.010 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.314 4.314 8 H 0.074 0.926 9 N -0.570 5.570 10 C 0.438 3.562 11 O -0.591 6.591 12 C 0.036 3.964 13 N -0.443 5.443 14 C 0.071 3.929 15 C -0.123 4.123 16 C -0.132 4.132 17 C -0.128 4.128 18 C -0.133 4.133 19 C -0.045 4.045 20 C -0.091 4.091 21 C 0.056 3.944 22 H 0.153 0.847 23 C 0.512 3.488 24 N -0.821 5.821 25 O -0.563 6.563 26 H 0.274 0.726 27 H 0.386 0.614 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.410 0.590 37 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.904 -16.812 2.957 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.220 4.220 3 Si 0.814 3.186 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.444 4.444 8 H 0.092 0.908 9 N -0.206 5.206 10 C 0.225 3.775 11 O -0.477 6.477 12 C -0.094 4.094 13 N -0.162 5.162 14 C -0.023 4.023 15 C -0.143 4.143 16 C -0.151 4.151 17 C -0.146 4.146 18 C -0.152 4.152 19 C -0.047 4.047 20 C -0.129 4.129 21 C -0.055 4.055 22 H 0.170 0.830 23 C 0.295 3.705 24 N -0.386 5.386 25 O -0.440 6.440 26 H 0.083 0.917 27 H 0.219 0.781 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.144 0.856 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.136 0.864 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.242 0.758 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.212 -16.374 2.675 17.117 hybrid contribution -0.213 1.733 0.599 1.846 sum 3.999 -14.641 3.274 15.527 Atomic orbital electron populations 1.69700 1.06837 1.28757 1.51644 1.25999 0.96517 1.02312 0.97129 0.84979 0.77746 0.77319 0.78558 1.19560 1.19704 1.20099 1.19539 0.92258 0.84161 1.48440 0.90771 1.41868 1.08663 1.04840 1.65220 1.21233 0.88650 0.86410 0.81160 1.90549 1.14271 1.86411 1.56492 1.22412 0.95549 0.86730 1.04673 1.61052 1.13065 1.38401 1.03654 1.19384 0.89900 0.99176 0.93870 1.20554 0.98809 1.03184 0.91708 1.21011 0.92363 1.01280 1.00425 1.21195 0.99750 1.00482 0.93200 1.20418 0.96370 1.02769 0.95649 1.20576 0.94391 0.94005 0.95702 1.21745 0.95924 1.00809 0.94404 1.22991 0.92817 1.02275 0.87387 0.82981 1.20492 0.81639 0.86601 0.81747 1.43600 1.44921 1.13695 1.36418 1.90960 1.65001 1.17259 1.70823 0.91719 0.78146 0.88217 0.87460 0.85591 0.83770 0.84174 0.86419 0.91514 0.88487 0.75849 0.74660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.07 13.05 21.66 0.28 -53.79 16 2 C -0.02 -1.23 5.50 84.93 0.47 -0.76 16 3 Si 0.99 46.18 29.55 68.60 2.03 48.20 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.31 -19.02 9.68 84.04 0.81 -18.20 16 8 H 0.07 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -31.83 5.29 -306.98 -1.62 -33.45 16 10 C 0.44 21.88 5.20 87.66 0.46 22.33 16 11 O -0.59 -31.32 8.84 -3.09 -0.03 -31.34 16 12 C 0.04 1.39 5.53 85.56 0.47 1.86 16 13 N -0.44 -14.83 5.32 -673.45 -3.58 -18.42 16 14 C 0.07 2.61 4.23 38.28 0.16 2.77 16 15 C -0.12 -4.13 10.07 22.47 0.23 -3.90 16 16 C -0.13 -4.03 10.02 22.21 0.22 -3.81 16 17 C -0.13 -3.97 10.06 22.30 0.22 -3.75 16 18 C -0.13 -4.65 10.01 22.21 0.22 -4.43 16 19 C -0.04 -1.66 3.83 -19.48 -0.07 -1.74 16 20 C -0.09 -3.16 5.66 30.68 0.17 -2.98 16 21 C 0.06 1.59 3.78 44.53 0.17 1.76 16 22 H 0.15 2.90 7.99 -2.39 -0.02 2.88 16 23 C 0.51 15.16 5.88 87.66 0.52 15.68 16 24 N -0.82 -14.16 8.87 -173.54 -1.54 -15.70 16 25 O -0.56 -23.75 13.04 -3.02 -0.04 -23.79 16 26 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 27 H 0.39 21.44 7.90 -92.71 -0.73 20.70 16 28 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 29 H 0.11 4.09 5.22 -2.39 -0.01 4.07 16 30 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 33 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.07 3.05 5.74 -2.39 -0.01 3.03 16 35 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.41 6.48 8.93 -92.71 -0.83 5.66 16 37 H 0.42 3.75 8.72 -92.71 -0.81 2.94 16 Total: -1.00 -78.05 303.22 -1.67 -79.72 By element: Atomic # 1 Polarization: 44.93 SS G_CDS: -1.22 Total: 43.72 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 4.05 Total: 4.84 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -6.46 Total: -121.35 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -0.07 Total: -55.13 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -78.05 -1.67 -79.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.019 kcal (2) G-P(sol) polarization free energy of solvation -78.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds