Wall clock time and date at job start Tue Mar 31 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35753 * 119.38547 * 2 1 4 4 C 1.39477 * 120.13045 * 179.70571 * 3 2 1 5 5 C 1.39336 * 118.96175 * 0.27068 * 4 3 2 6 6 C 1.47078 * 120.59004 * 180.02562 * 5 4 3 7 7 O 1.21652 * 120.00070 * 303.38496 * 6 5 4 8 8 N 1.34776 * 119.99908 * 123.37852 * 6 5 4 9 9 C 1.46496 * 119.99764 * 6.70797 * 8 6 5 10 10 C 1.50706 * 109.47058 * 147.12133 * 9 8 6 11 11 H 1.07997 * 119.99992 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00118 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00239 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99739 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46860 * 90.01026 * 14 12 10 16 16 H 1.48499 * 109.47014 * 210.00374 * 14 12 10 17 17 H 1.48490 * 109.47330 * 330.00754 * 14 12 10 18 18 C 1.46498 * 119.99701 * 186.70080 * 8 6 5 19 19 C 1.52994 * 109.46951 * 84.54869 * 18 8 6 20 20 C 1.47206 * 109.46779 * 179.97438 * 19 18 8 21 21 N 9.56978 * 166.73458 * 67.26438 * 2 1 3 22 22 C 1.41897 * 118.82230 * 0.02562 * 5 4 3 23 23 O 1.21887 * 120.09985 * 179.97438 * 22 5 4 24 24 N 1.34652 * 119.79615 * 0.02562 * 22 5 4 25 25 H 0.97001 * 119.47278 * 180.02562 * 24 22 5 26 26 H 1.08991 * 109.47605 * 90.00085 * 1 2 3 27 27 H 1.09002 * 109.46758 * 210.00557 * 1 2 3 28 28 H 1.08998 * 109.46863 * 329.99945 * 1 2 3 29 29 H 1.08004 * 119.93595 * 359.97238 * 3 2 1 30 30 H 1.08001 * 120.51754 * 180.29512 * 4 3 2 31 31 H 1.08995 * 109.47179 * 267.11401 * 9 8 6 32 32 H 1.08997 * 109.47820 * 27.11855 * 9 8 6 33 33 H 0.96998 * 120.00232 * 179.97438 * 13 12 10 34 34 H 1.09005 * 109.46870 * 204.54183 * 18 8 6 35 35 H 1.09001 * 109.47230 * 324.54365 * 18 8 6 36 36 H 1.09000 * 109.47193 * 299.99579 * 19 18 8 37 37 H 1.09001 * 109.47565 * 59.99701 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1829 0.0000 4 6 3.5677 1.2010 0.0062 5 6 4.2582 -0.0092 0.0066 6 6 5.7288 -0.0319 0.0136 7 8 6.3502 0.5405 -0.8617 8 7 6.3880 -0.6867 0.9899 9 6 5.6458 -1.4971 1.9586 10 6 6.4850 -2.6783 2.3731 11 1 7.4722 -2.8122 1.9562 12 6 5.9919 -3.5887 3.2836 13 7 6.7244 -4.6192 3.6457 14 14 4.2840 -3.3576 4.0041 15 1 3.2877 -4.0498 3.1476 16 1 4.2427 -3.9307 5.3734 17 1 3.9639 -1.9088 4.0639 18 6 7.8468 -0.5881 1.0821 19 6 8.2244 0.6732 1.8613 20 6 9.6901 0.7719 1.9546 21 7 10.8214 0.8487 2.0253 22 6 3.5175 -1.2195 0.0001 23 8 4.0978 -2.2913 -0.0002 24 7 2.1715 -1.1801 -0.0068 25 1 1.6698 -2.0103 -0.0108 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6220 2.1117 -0.0005 30 1 4.1040 2.1385 0.0110 31 1 5.4119 -0.8924 2.8347 32 1 4.7206 -1.8506 1.5036 33 1 6.3777 -5.2594 4.2866 34 1 8.2382 -1.4648 1.5983 35 1 8.2716 -0.5368 0.0796 36 1 7.8329 1.5499 1.3453 37 1 7.7995 0.6219 2.8638 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067230485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:11 Heat of formation + Delta-G solvation = 10.068738 kcal Electronic energy + Delta-G solvation = -23025.768691 eV Core-core repulsion = 19576.820478 eV Total energy + Delta-G solvation = -3448.948212 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.41118 -39.04604 -37.30398 -36.50828 -35.16414 -33.71592 -32.52406 -31.76733 -31.07236 -28.15610 -27.50511 -24.42024 -23.68904 -22.83747 -22.06351 -19.66838 -17.71894 -17.64019 -17.42119 -16.74130 -16.08224 -15.99027 -15.68820 -15.19902 -14.61988 -14.38306 -14.24258 -14.11022 -13.88922 -13.38679 -13.24728 -13.02857 -12.54960 -12.40093 -12.32926 -12.15485 -12.02280 -11.88419 -11.44151 -11.20407 -10.90480 -10.71023 -10.48395 -10.32901 -10.13891 -9.73016 -9.40942 -9.17048 -8.61230 -7.89127 -7.78074 -6.11528 -4.09527 0.56006 1.83453 2.71995 2.98454 3.12827 3.19825 3.22707 3.27205 3.28798 3.62932 3.83113 4.14016 4.35131 4.49810 4.58598 4.79086 4.98806 5.04532 5.14503 5.22582 5.25203 5.41287 5.51047 5.55979 5.83343 5.88306 5.98128 6.12018 6.30584 6.53756 6.57493 6.71876 6.85983 6.90512 7.33645 7.60281 7.88749 8.03356 8.12494 8.54881 8.73510 8.90753 9.47953 11.00833 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011758 B = 0.007334 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.851309 B = 3816.668424 C = 5651.905512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.177 3.823 3 C -0.240 4.240 4 C 0.034 3.966 5 C -0.248 4.248 6 C 0.577 3.423 7 O -0.560 6.560 8 N -0.566 5.566 9 C 0.176 3.824 10 C -0.527 4.527 11 H 0.086 0.914 12 C 0.078 3.922 13 N -0.895 5.895 14 Si 0.871 3.129 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.267 1.267 18 C 0.114 3.886 19 C -0.042 4.042 20 C 0.225 3.775 21 N -0.452 5.452 22 C 0.516 3.484 23 O -0.492 6.492 24 N -0.602 5.602 25 H 0.415 0.585 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.265 0.735 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.865 12.392 -4.937 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.065 3.935 3 C -0.264 4.264 4 C 0.011 3.989 5 C -0.255 4.255 6 C 0.364 3.636 7 O -0.441 6.441 8 N -0.294 5.294 9 C 0.056 3.944 10 C -0.564 4.564 11 H 0.104 0.896 12 C -0.125 4.125 13 N -0.533 5.533 14 Si 0.698 3.302 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.191 1.191 18 C -0.010 4.010 19 C -0.083 4.083 20 C -0.093 4.093 21 N -0.130 5.130 22 C 0.315 3.685 23 O -0.370 6.370 24 N -0.235 5.235 25 H 0.253 0.747 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.166 0.834 30 H 0.159 0.841 31 H 0.028 0.972 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.328 12.028 -5.129 19.397 hybrid contribution -1.698 -0.441 0.598 1.854 sum -16.026 11.586 -4.532 20.288 Atomic orbital electron populations 1.21131 0.88109 1.05003 1.04332 1.20668 0.94931 0.86120 0.91798 1.20310 0.94000 0.96845 1.15215 1.21725 0.93587 0.97458 0.86090 1.20959 0.95249 0.93176 1.16155 1.17452 0.85764 0.78869 0.81488 1.90742 1.68621 1.47782 1.36987 1.47755 1.06458 1.45768 1.29429 1.20640 0.95894 0.90530 0.87316 1.21153 1.03486 1.06674 1.25123 0.89647 1.24759 0.97020 0.94727 0.95991 1.69875 1.37170 1.13068 1.33177 0.86919 0.85840 0.78785 0.78642 1.20033 1.21122 1.19134 1.21378 0.81610 0.97218 1.00823 1.19706 0.81957 1.02020 1.04639 1.29055 0.95082 0.92675 0.92519 1.81156 1.12929 1.09270 1.09597 1.16941 0.80629 0.90937 0.79991 1.91074 1.66568 1.30867 1.48527 1.43648 1.09018 1.09124 1.61679 0.74697 0.89070 0.90282 0.88741 0.83372 0.84101 0.97155 0.90741 0.92522 0.86639 0.90499 0.87867 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.50 10.06 36.00 0.36 -0.14 16 2 C 0.18 1.50 6.80 -81.89 -0.56 0.94 16 3 C -0.24 -2.08 9.58 -40.01 -0.38 -2.47 16 4 C 0.03 0.41 9.90 -38.71 -0.38 0.03 16 5 C -0.25 -4.20 5.11 -104.50 -0.53 -4.74 16 6 C 0.58 11.51 6.80 -12.68 -0.09 11.42 16 7 O -0.56 -11.93 16.73 5.23 0.09 -11.84 16 8 N -0.57 -11.78 2.81 -176.46 -0.50 -12.28 16 9 C 0.18 4.09 4.12 -5.19 -0.02 4.07 16 10 C -0.53 -14.32 9.15 -34.44 -0.32 -14.63 16 11 H 0.09 2.48 5.83 -52.49 -0.31 2.17 16 12 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 13 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 14 Si 0.87 20.71 27.47 -169.99 -4.67 16.04 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 18 C 0.11 2.16 5.12 -4.05 -0.02 2.14 16 19 C -0.04 -0.63 5.99 -29.52 -0.18 -0.81 16 20 C 0.22 3.72 15.43 -20.75 -0.32 3.40 16 21 N -0.45 -8.45 18.54 42.16 0.78 -7.67 16 22 C 0.52 9.00 6.52 -14.92 -0.10 8.90 16 23 O -0.49 -10.91 14.55 5.02 0.07 -10.84 16 24 N -0.60 -7.19 5.22 -10.90 -0.06 -7.24 16 25 H 0.41 4.04 8.75 -40.82 -0.36 3.68 16 26 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.23 8.06 -51.93 -0.42 -0.19 16 29 H 0.15 0.76 8.06 -52.48 -0.42 0.33 16 30 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.01 0.24 7.20 -51.93 -0.37 -0.13 16 32 H 0.08 1.78 2.45 -54.39 -0.13 1.65 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.12 2.42 5.27 -51.93 -0.27 2.15 16 35 H 0.08 1.46 7.50 -51.93 -0.39 1.07 16 36 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 322.13 15.07 4.85 4.85 Total: -1.00 -36.88 322.13 -5.24 -42.11 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -3.96 Total: 2.67 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -2.63 Total: 10.20 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 1.00 Total: -53.20 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.16 Total: -22.68 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.88 -5.24 -42.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067230485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.183 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds