Wall clock time and date at job start Tue Mar 31 2020 02:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35753 * 119.38547 * 2 1 4 4 C 1.39477 * 120.13045 * 179.70571 * 3 2 1 5 5 C 1.39336 * 118.96175 * 0.27068 * 4 3 2 6 6 C 1.47078 * 120.59004 * 180.02562 * 5 4 3 7 7 O 1.21652 * 120.00070 * 303.38496 * 6 5 4 8 8 N 1.34776 * 119.99908 * 123.37852 * 6 5 4 9 9 C 1.46496 * 119.99764 * 6.70797 * 8 6 5 10 10 C 1.50706 * 109.47058 * 147.12133 * 9 8 6 11 11 H 1.07997 * 119.99992 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00118 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00239 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99739 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46860 * 90.01026 * 14 12 10 16 16 H 1.48499 * 109.47014 * 210.00374 * 14 12 10 17 17 H 1.48490 * 109.47330 * 330.00754 * 14 12 10 18 18 C 1.46498 * 119.99701 * 186.70080 * 8 6 5 19 19 C 1.52994 * 109.46951 * 84.54869 * 18 8 6 20 20 C 1.47206 * 109.46779 * 179.97438 * 19 18 8 21 21 N 9.56978 * 166.73458 * 67.26438 * 2 1 3 22 22 C 1.41897 * 118.82230 * 0.02562 * 5 4 3 23 23 O 1.21887 * 120.09985 * 179.97438 * 22 5 4 24 24 N 1.34652 * 119.79615 * 0.02562 * 22 5 4 25 25 H 0.97001 * 119.47278 * 180.02562 * 24 22 5 26 26 H 1.08991 * 109.47605 * 90.00085 * 1 2 3 27 27 H 1.09002 * 109.46758 * 210.00557 * 1 2 3 28 28 H 1.08998 * 109.46863 * 329.99945 * 1 2 3 29 29 H 1.08004 * 119.93595 * 359.97238 * 3 2 1 30 30 H 1.08001 * 120.51754 * 180.29512 * 4 3 2 31 31 H 1.08995 * 109.47179 * 267.11401 * 9 8 6 32 32 H 1.08997 * 109.47820 * 27.11855 * 9 8 6 33 33 H 0.96998 * 120.00232 * 179.97438 * 13 12 10 34 34 H 1.09005 * 109.46870 * 204.54183 * 18 8 6 35 35 H 1.09001 * 109.47230 * 324.54365 * 18 8 6 36 36 H 1.09000 * 109.47193 * 299.99579 * 19 18 8 37 37 H 1.09001 * 109.47565 * 59.99701 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1829 0.0000 4 6 3.5677 1.2010 0.0062 5 6 4.2582 -0.0092 0.0066 6 6 5.7288 -0.0319 0.0136 7 8 6.3502 0.5405 -0.8617 8 7 6.3880 -0.6867 0.9899 9 6 5.6458 -1.4971 1.9586 10 6 6.4850 -2.6783 2.3731 11 1 7.4722 -2.8122 1.9562 12 6 5.9919 -3.5887 3.2836 13 7 6.7244 -4.6192 3.6457 14 14 4.2840 -3.3576 4.0041 15 1 3.2877 -4.0498 3.1476 16 1 4.2427 -3.9307 5.3734 17 1 3.9639 -1.9088 4.0639 18 6 7.8468 -0.5881 1.0821 19 6 8.2244 0.6732 1.8613 20 6 9.6901 0.7719 1.9546 21 7 10.8214 0.8487 2.0253 22 6 3.5175 -1.2195 0.0001 23 8 4.0978 -2.2913 -0.0002 24 7 2.1715 -1.1801 -0.0068 25 1 1.6698 -2.0103 -0.0108 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6220 2.1117 -0.0005 30 1 4.1040 2.1385 0.0110 31 1 5.4119 -0.8924 2.8347 32 1 4.7206 -1.8506 1.5036 33 1 6.3777 -5.2594 4.2866 34 1 8.2382 -1.4648 1.5983 35 1 8.2716 -0.5368 0.0796 36 1 7.8329 1.5499 1.3453 37 1 7.7995 0.6219 2.8638 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067230485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:10 Heat of formation + Delta-G solvation = -18.121538 kcal Electronic energy + Delta-G solvation = -23026.991113 eV Core-core repulsion = 19576.820478 eV Total energy + Delta-G solvation = -3450.170634 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.50399 -40.46604 -38.46698 -37.94956 -36.76360 -34.74497 -34.53886 -32.69101 -32.40031 -29.78910 -28.61782 -25.72848 -24.71085 -24.35073 -23.40824 -20.92394 -19.30228 -18.89663 -18.86938 -18.24764 -17.31654 -17.17494 -17.01824 -16.51502 -16.06596 -15.86914 -15.70752 -15.29113 -14.82487 -14.72881 -14.63485 -14.10039 -13.82920 -13.68585 -13.61563 -13.34796 -13.21820 -12.98637 -12.78321 -12.69575 -12.64851 -12.24354 -12.01023 -11.74574 -11.42173 -11.32301 -11.05632 -10.83039 -10.65260 -9.42740 -8.91410 -8.25499 -6.27927 -0.35709 0.87772 1.31958 1.36985 1.45214 1.51183 1.65895 1.75340 2.01412 2.29826 2.36561 2.63694 3.10274 3.15965 3.57976 3.72714 3.80487 4.05796 4.14253 4.17961 4.37363 4.51419 4.68800 4.78957 4.81965 4.95506 5.01273 5.03744 5.06450 5.11915 5.22558 5.34413 5.56622 5.73922 5.78747 5.91732 6.10136 6.51482 6.71629 6.75174 7.00555 7.21713 7.36653 8.90162 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011758 B = 0.007334 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.851309 B = 3816.668424 C = 5651.905512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.198 3.802 3 C -0.240 4.240 4 C 0.069 3.931 5 C -0.319 4.319 6 C 0.578 3.422 7 O -0.585 6.585 8 N -0.576 5.576 9 C 0.187 3.813 10 C -0.530 4.530 11 H 0.048 0.952 12 C 0.013 3.987 13 N -0.947 5.947 14 Si 0.938 3.062 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.236 1.236 18 C 0.113 3.887 19 C -0.024 4.024 20 C 0.244 3.756 21 N -0.488 5.488 22 C 0.508 3.492 23 O -0.565 6.565 24 N -0.594 5.594 25 H 0.425 0.575 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.199 0.801 30 H 0.161 0.839 31 H 0.022 0.978 32 H 0.082 0.918 33 H 0.266 0.734 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.129 0.871 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.758 15.691 -4.720 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.085 3.915 3 C -0.262 4.262 4 C 0.046 3.954 5 C -0.326 4.326 6 C 0.368 3.632 7 O -0.468 6.468 8 N -0.304 5.304 9 C 0.066 3.934 10 C -0.568 4.568 11 H 0.066 0.934 12 C -0.184 4.184 13 N -0.588 5.588 14 Si 0.761 3.239 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.159 1.159 18 C -0.011 4.011 19 C -0.065 4.065 20 C -0.073 4.073 21 N -0.166 5.166 22 C 0.311 3.689 23 O -0.451 6.451 24 N -0.224 5.224 25 H 0.265 0.735 26 H 0.131 0.869 27 H 0.107 0.893 28 H 0.142 0.858 29 H 0.216 0.784 30 H 0.179 0.821 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.268 15.384 -4.927 25.143 hybrid contribution -0.337 -1.376 0.379 1.467 sum -19.605 14.008 -4.547 24.520 Atomic orbital electron populations 1.21378 0.83859 1.06952 1.06196 1.21669 0.97400 0.84712 0.87709 1.20925 0.92522 0.98904 1.13827 1.22161 0.95264 0.96384 0.81588 1.20658 0.93397 0.94928 1.23645 1.17938 0.87409 0.77675 0.80219 1.90697 1.69826 1.48959 1.37353 1.47757 1.06670 1.46196 1.29758 1.20407 0.95548 0.89291 0.88121 1.21478 1.02642 1.08252 1.24385 0.93389 1.25716 1.01721 0.94291 0.96692 1.70046 1.39635 1.14539 1.34584 0.85844 0.80013 0.80469 0.77539 1.19775 1.20680 1.15933 1.21258 0.81423 0.97968 1.00485 1.19623 0.80886 1.00813 1.05160 1.29233 0.95152 0.91528 0.91350 1.81168 1.13997 1.10508 1.10928 1.17061 0.82146 0.90179 0.79557 1.91016 1.68379 1.32864 1.52850 1.43575 1.07628 1.11182 1.60035 0.73525 0.86885 0.89313 0.85840 0.78409 0.82119 0.96004 0.90108 0.92553 0.89734 0.91449 0.85281 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.13 10.06 71.24 0.72 0.58 16 2 C 0.20 2.29 6.80 41.42 0.28 2.57 16 3 C -0.24 -2.72 9.58 21.99 0.21 -2.51 16 4 C 0.07 1.40 9.90 22.83 0.23 1.63 16 5 C -0.32 -10.47 5.11 -19.79 -0.10 -10.57 16 6 C 0.58 23.34 6.80 86.56 0.59 23.92 16 7 O -0.59 -25.32 16.73 -4.20 -0.07 -25.39 16 8 N -0.58 -24.69 2.81 -830.44 -2.34 -27.02 16 9 C 0.19 8.84 4.12 85.64 0.35 9.19 16 10 C -0.53 -30.25 9.15 25.60 0.23 -30.01 16 11 H 0.05 3.03 5.83 -2.91 -0.02 3.01 16 12 C 0.01 0.77 5.47 84.66 0.46 1.23 16 13 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 14 Si 0.94 42.92 27.47 68.60 1.88 44.80 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 18 C 0.11 4.53 5.12 86.38 0.44 4.97 16 19 C -0.02 -0.72 5.99 28.79 0.17 -0.55 16 20 C 0.24 8.20 15.43 89.44 1.38 9.58 16 21 N -0.49 -18.58 18.54 20.01 0.37 -18.21 16 22 C 0.51 17.43 6.52 85.17 0.56 17.98 16 23 O -0.57 -26.01 14.55 -4.95 -0.07 -26.08 16 24 N -0.59 -12.50 5.22 -306.60 -1.60 -14.10 16 25 H 0.42 7.22 8.75 -92.71 -0.81 6.41 16 26 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.12 -0.41 8.06 -2.39 -0.02 -0.43 16 29 H 0.20 0.36 8.06 -2.91 -0.02 0.34 16 30 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 32 H 0.08 3.92 2.45 -41.41 -0.10 3.81 16 33 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.08 3.88 5.27 -2.38 -0.01 3.87 16 35 H 0.07 2.75 7.50 -2.39 -0.02 2.73 16 36 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.13 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -88.92 322.13 4.17 -84.75 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.17 Total: 12.36 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 5.52 Total: 28.02 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -3.26 Total: -118.45 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -0.14 Total: -51.47 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Total: -88.92 4.17 -84.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067230485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.626 kcal (2) G-P(sol) polarization free energy of solvation -88.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds