Wall clock time and date at job start Tue Mar 31 2020 03:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36015 * 117.00234 * 2 1 4 4 C 1.38503 * 120.07408 * 359.97438 * 3 2 1 5 5 C 1.38288 * 120.01472 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.17763 * 0.02562 * 5 4 3 7 7 C 1.38215 * 120.16513 * 359.97438 * 6 5 4 8 8 C 1.38729 * 119.97785 * 359.97438 * 7 6 5 9 9 N 1.39963 * 120.08841 * 179.97438 * 8 7 6 10 10 C 1.46500 * 120.00221 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47203 * 180.02562 * 10 9 8 12 12 O 1.21293 * 120.00137 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00221 * 179.97438 * 11 10 9 14 14 C 1.37093 * 120.00112 * 179.97438 * 13 11 10 15 15 H 1.07999 * 120.00246 * 20.22019 * 14 13 11 16 16 C 1.38948 * 119.99737 * 200.21828 * 14 13 11 17 17 N 1.31413 * 120.00367 * 21.43038 * 16 14 13 18 18 Si 1.86802 * 119.99831 * 201.42556 * 16 14 13 19 19 H 1.48502 * 109.47085 * 90.00590 * 18 16 14 20 20 H 1.48500 * 109.47104 * 210.00206 * 18 16 14 21 21 H 1.48492 * 109.47378 * 330.00398 * 18 16 14 22 22 C 1.46503 * 119.99680 * 0.02562 * 13 11 10 23 23 C 1.47194 * 109.47398 * 83.94724 * 22 13 11 24 24 N 7.78689 * 161.07826 * 75.21520 * 2 1 3 25 25 H 1.09003 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47637 * 300.00011 * 1 2 3 27 27 H 1.09007 * 109.47003 * 60.00359 * 1 2 3 28 28 H 1.07995 * 119.99676 * 0.25544 * 4 3 2 29 29 H 1.07993 * 119.91081 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.91748 * 179.97438 * 6 5 4 31 31 H 1.08000 * 120.01361 * 179.97438 * 7 6 5 32 32 H 0.96998 * 120.00356 * 180.02562 * 9 8 7 33 33 H 1.09007 * 109.46796 * 299.99794 * 10 9 8 34 34 H 1.08996 * 109.47489 * 59.99592 * 10 9 8 35 35 H 0.96995 * 120.00033 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.47057 * 203.95022 * 22 13 11 37 37 H 1.09003 * 109.46864 * 323.94599 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3745 -0.0005 5 6 1.9228 3.6059 0.0000 6 6 3.3033 3.6811 0.0005 7 6 4.0618 2.5256 0.0011 8 6 3.4375 1.2867 0.0016 9 7 4.2033 0.1152 0.0016 10 6 5.6661 0.1961 0.0016 11 6 6.2462 -1.1947 0.0010 12 8 5.5102 -2.1588 0.0010 13 7 7.5829 -1.3674 0.0004 14 6 8.1106 -2.6327 0.0003 15 1 7.5083 -3.4690 -0.3225 16 6 9.4204 -2.8392 0.4156 17 7 10.0131 -1.9539 1.1850 18 14 10.3389 -4.3752 -0.1198 19 1 11.0485 -4.1078 -1.3966 20 1 11.3248 -4.7518 0.9249 21 1 9.3737 -5.4869 -0.3134 22 6 8.4719 -0.2030 0.0009 23 6 8.6539 0.2749 1.3811 24 7 8.7950 0.6444 2.4415 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2151 2.3193 0.0032 29 1 1.3342 4.5114 -0.0008 30 1 3.7903 4.6451 0.0005 31 1 5.1400 2.5872 0.0011 32 1 3.7656 -0.7504 0.0016 33 1 6.0004 0.7293 -0.8885 34 1 6.0005 0.7293 0.8915 35 1 10.9273 -2.0983 1.4752 36 1 9.4387 -0.4838 -0.4169 37 1 8.0317 0.5904 -0.6033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068424325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:08 Heat of formation + Delta-G solvation = 3.315392 kcal Electronic energy + Delta-G solvation = -22305.288047 eV Core-core repulsion = 18856.046987 eV Total energy + Delta-G solvation = -3449.241059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10799 -39.00176 -37.32646 -36.03899 -34.96837 -34.30342 -31.99986 -30.02931 -29.83145 -27.62236 -27.20480 -26.54174 -24.36813 -22.06625 -21.50197 -19.36092 -18.25011 -18.01375 -17.09863 -16.49757 -16.10299 -15.71740 -15.65891 -14.99686 -14.61296 -14.51403 -14.41303 -13.83882 -13.81294 -13.17392 -13.09753 -13.05526 -12.47832 -12.30184 -12.04401 -11.93624 -11.67095 -11.41221 -11.27575 -11.21052 -11.01827 -10.90542 -10.66980 -10.46058 -10.42633 -9.89989 -9.34894 -8.78307 -8.42037 -8.13632 -6.95121 -6.58390 -4.09995 1.53011 1.74064 3.04658 3.17981 3.21983 3.34909 3.43227 3.61283 3.83765 3.93087 3.99451 4.08263 4.69610 4.82243 4.90579 5.02934 5.10750 5.14264 5.16712 5.31682 5.43239 5.46703 5.57874 5.59596 5.72381 5.79346 5.90911 6.02365 6.27580 6.38114 6.46016 6.72096 6.89811 7.21759 7.40156 7.65064 7.84626 8.16784 8.18215 8.68026 8.88831 9.08510 9.58927 10.47741 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.023955 B = 0.003997 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.569255 B = 7004.117988 C = 7907.677583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.318 6.318 3 C 0.048 3.952 4 C -0.162 4.162 5 C -0.154 4.154 6 C -0.102 4.102 7 C -0.177 4.177 8 C 0.208 3.792 9 N -0.722 5.722 10 C 0.109 3.891 11 C 0.448 3.552 12 O -0.567 6.567 13 N -0.436 5.436 14 C -0.317 4.317 15 H 0.109 0.891 16 C 0.035 3.965 17 N -0.873 5.873 18 Si 0.929 3.071 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.268 1.268 22 C 0.218 3.782 23 C 0.243 3.757 24 N -0.466 5.466 25 H 0.096 0.904 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.416 0.584 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.275 0.725 36 H 0.127 0.873 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.207 9.506 -5.905 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.232 6.232 3 C -0.001 4.001 4 C -0.182 4.182 5 C -0.175 4.175 6 C -0.121 4.121 7 C -0.200 4.200 8 C 0.103 3.897 9 N -0.354 5.354 10 C -0.019 4.019 11 C 0.236 3.764 12 O -0.450 6.450 13 N -0.156 5.156 14 C -0.444 4.444 15 H 0.127 0.873 16 C -0.170 4.170 17 N -0.511 5.511 18 Si 0.756 3.244 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.193 1.193 22 C 0.091 3.909 23 C -0.076 4.076 24 N -0.145 5.145 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.255 0.745 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.866 9.354 -4.250 14.954 hybrid contribution 0.307 -0.994 -0.393 1.112 sum -10.559 8.359 -4.643 14.245 Atomic orbital electron populations 1.22942 0.78944 1.03518 1.00776 1.86046 1.20801 1.26549 1.89828 1.18447 0.90335 0.84878 1.06396 1.20920 0.99240 0.91934 1.06087 1.20597 0.94518 0.96485 1.05874 1.20771 0.93637 0.97553 1.00138 1.20539 0.99970 0.90185 1.09341 1.17261 0.87168 0.87790 0.97484 1.44388 1.03842 1.06478 1.80740 1.21077 0.81727 0.97201 1.01898 1.20000 0.83066 0.89883 0.83457 1.90545 1.58281 1.41698 1.54435 1.43564 1.02762 1.05800 1.63499 1.19723 0.96495 0.84912 1.43246 0.87302 1.25322 0.97726 0.99360 0.94594 1.69843 1.14538 1.37052 1.29670 0.85866 0.79083 0.81183 0.78301 1.20035 1.21050 1.19273 1.18745 0.98758 0.87947 0.85465 1.29032 0.92124 0.90983 0.95465 1.80730 1.09595 1.12340 1.11863 0.88597 0.93106 0.93093 0.85933 0.86583 0.86241 0.85424 0.74471 0.90370 0.90656 0.91472 0.85545 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.70 9.74 -19.79 -0.19 -4.89 16 3 C 0.05 0.71 6.70 -39.09 -0.26 0.45 16 4 C -0.16 -2.01 9.04 -39.47 -0.36 -2.37 16 5 C -0.15 -1.79 10.04 -39.56 -0.40 -2.19 16 6 C -0.10 -1.23 10.04 -39.58 -0.40 -1.63 16 7 C -0.18 -2.47 9.31 -39.41 -0.37 -2.84 16 8 C 0.21 3.33 6.67 -83.56 -0.56 2.77 16 9 N -0.72 -12.84 5.70 -59.67 -0.34 -13.18 16 10 C 0.11 1.91 4.00 -5.19 -0.02 1.89 16 11 C 0.45 9.93 7.63 -10.98 -0.08 9.84 16 12 O -0.57 -14.53 15.34 5.55 0.09 -14.45 16 13 N -0.44 -9.82 2.60 -117.93 -0.31 -10.13 16 14 C -0.32 -7.95 9.27 -14.94 -0.14 -8.09 16 15 H 0.11 2.90 7.43 -52.49 -0.39 2.51 16 16 C 0.03 0.83 4.84 -17.47 -0.08 0.75 16 17 N -0.87 -21.56 9.58 55.50 0.53 -21.02 16 18 Si 0.93 19.21 29.60 -169.99 -5.03 14.18 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 C 0.22 4.10 4.91 -6.83 -0.03 4.07 16 23 C 0.24 5.17 12.81 -20.90 -0.27 4.90 16 24 N -0.47 -10.81 18.51 41.99 0.78 -10.03 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 28 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.13 1.63 6.74 -52.49 -0.35 1.28 16 32 H 0.42 8.14 6.80 -40.82 -0.28 7.86 16 33 H 0.08 1.14 7.23 -51.93 -0.38 0.76 16 34 H 0.08 1.31 7.31 -51.93 -0.38 0.93 16 35 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.13 2.41 6.63 -51.93 -0.34 2.07 16 37 H 0.09 1.19 6.69 -51.93 -0.35 0.84 16 LS Contribution 320.48 15.07 4.83 4.83 Total: -1.00 -30.95 320.48 -5.62 -36.57 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.00 Total: 9.24 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -1.97 Total: 8.88 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.66 Total: -54.36 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.11 Total: -19.34 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.95 -5.62 -36.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068424325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.884 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds