Wall clock time and date at job start Tue Mar 31 2020 03:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36015 * 117.00234 * 2 1 4 4 C 1.38503 * 120.07408 * 359.97438 * 3 2 1 5 5 C 1.38288 * 120.01472 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.17763 * 0.02562 * 5 4 3 7 7 C 1.38215 * 120.16513 * 359.97438 * 6 5 4 8 8 C 1.38729 * 119.97785 * 359.97438 * 7 6 5 9 9 N 1.39963 * 120.08841 * 179.97438 * 8 7 6 10 10 C 1.46500 * 120.00221 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47203 * 180.02562 * 10 9 8 12 12 O 1.21293 * 120.00137 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00221 * 179.97438 * 11 10 9 14 14 C 1.37093 * 120.00112 * 179.97438 * 13 11 10 15 15 H 1.07999 * 120.00246 * 20.22019 * 14 13 11 16 16 C 1.38948 * 119.99737 * 200.21828 * 14 13 11 17 17 N 1.31413 * 120.00367 * 21.43038 * 16 14 13 18 18 Si 1.86802 * 119.99831 * 201.42556 * 16 14 13 19 19 H 1.48502 * 109.47085 * 90.00590 * 18 16 14 20 20 H 1.48500 * 109.47104 * 210.00206 * 18 16 14 21 21 H 1.48492 * 109.47378 * 330.00398 * 18 16 14 22 22 C 1.46503 * 119.99680 * 0.02562 * 13 11 10 23 23 C 1.47194 * 109.47398 * 83.94724 * 22 13 11 24 24 N 7.78689 * 161.07826 * 75.21520 * 2 1 3 25 25 H 1.09003 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47637 * 300.00011 * 1 2 3 27 27 H 1.09007 * 109.47003 * 60.00359 * 1 2 3 28 28 H 1.07995 * 119.99676 * 0.25544 * 4 3 2 29 29 H 1.07993 * 119.91081 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.91748 * 179.97438 * 6 5 4 31 31 H 1.08000 * 120.01361 * 179.97438 * 7 6 5 32 32 H 0.96998 * 120.00356 * 180.02562 * 9 8 7 33 33 H 1.09007 * 109.46796 * 299.99794 * 10 9 8 34 34 H 1.08996 * 109.47489 * 59.99592 * 10 9 8 35 35 H 0.96995 * 120.00033 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.47057 * 203.95022 * 22 13 11 37 37 H 1.09003 * 109.46864 * 323.94599 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3745 -0.0005 5 6 1.9228 3.6059 0.0000 6 6 3.3033 3.6811 0.0005 7 6 4.0618 2.5256 0.0011 8 6 3.4375 1.2867 0.0016 9 7 4.2033 0.1152 0.0016 10 6 5.6661 0.1961 0.0016 11 6 6.2462 -1.1947 0.0010 12 8 5.5102 -2.1588 0.0010 13 7 7.5829 -1.3674 0.0004 14 6 8.1106 -2.6327 0.0003 15 1 7.5083 -3.4690 -0.3225 16 6 9.4204 -2.8392 0.4156 17 7 10.0131 -1.9539 1.1850 18 14 10.3389 -4.3752 -0.1198 19 1 11.0485 -4.1078 -1.3966 20 1 11.3248 -4.7518 0.9249 21 1 9.3737 -5.4869 -0.3134 22 6 8.4719 -0.2030 0.0009 23 6 8.6539 0.2749 1.3811 24 7 8.7950 0.6444 2.4415 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2151 2.3193 0.0032 29 1 1.3342 4.5114 -0.0008 30 1 3.7903 4.6451 0.0005 31 1 5.1400 2.5872 0.0011 32 1 3.7656 -0.7504 0.0016 33 1 6.0004 0.7293 -0.8885 34 1 6.0005 0.7293 0.8915 35 1 10.9273 -2.0983 1.4752 36 1 9.4387 -0.4838 -0.4169 37 1 8.0317 0.5904 -0.6033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068424325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:08 Heat of formation + Delta-G solvation = -16.970931 kcal Electronic energy + Delta-G solvation = -22306.167728 eV Core-core repulsion = 18856.046987 eV Total energy + Delta-G solvation = -3450.120740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.20035 -40.59655 -38.36514 -37.72505 -36.42773 -35.87840 -33.83188 -31.05825 -30.95386 -29.23943 -28.23043 -27.78305 -26.01264 -23.08010 -22.60605 -20.92941 -19.80364 -19.36813 -18.33649 -18.08958 -17.49694 -16.92772 -16.62266 -16.46541 -16.06445 -16.03128 -15.58258 -15.13152 -14.93640 -14.75999 -14.46618 -14.23170 -13.96305 -13.80595 -13.47519 -13.29733 -13.11391 -12.90451 -12.85077 -12.36906 -12.26926 -12.20344 -12.11448 -11.89861 -11.80552 -11.15427 -11.02867 -10.57510 -9.96773 -9.39889 -8.44094 -8.08602 -6.02011 0.55091 0.74053 1.37581 1.48281 1.58010 1.74750 1.98414 2.26419 2.31717 2.39677 2.61411 2.96499 3.00616 3.10194 3.55940 3.85049 3.99068 4.17999 4.27046 4.35104 4.40021 4.44119 4.47822 4.61279 4.62576 4.73678 4.75837 4.85438 4.97266 5.30173 5.46215 5.52881 5.76224 5.89925 5.99976 6.18863 6.35898 6.63522 6.85133 7.00156 7.05884 7.28031 7.81359 8.59732 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.023955 B = 0.003997 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.569255 B = 7004.117988 C = 7907.677583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.349 6.349 3 C 0.029 3.971 4 C -0.164 4.164 5 C -0.147 4.147 6 C -0.106 4.106 7 C -0.183 4.183 8 C 0.174 3.826 9 N -0.738 5.738 10 C 0.125 3.875 11 C 0.441 3.559 12 O -0.611 6.611 13 N -0.446 5.446 14 C -0.344 4.344 15 H 0.082 0.918 16 C 0.010 3.990 17 N -0.889 5.889 18 Si 0.988 3.012 19 H -0.257 1.257 20 H -0.287 1.287 21 H -0.279 1.279 22 C 0.218 3.782 23 C 0.256 3.744 24 N -0.503 5.503 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.137 0.863 32 H 0.403 0.597 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.276 0.724 36 H 0.126 0.874 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.644 11.669 -6.813 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.264 6.264 3 C -0.019 4.019 4 C -0.183 4.183 5 C -0.167 4.167 6 C -0.124 4.124 7 C -0.206 4.206 8 C 0.071 3.929 9 N -0.371 5.371 10 C -0.003 4.003 11 C 0.231 3.769 12 O -0.497 6.497 13 N -0.165 5.165 14 C -0.471 4.471 15 H 0.100 0.900 16 C -0.193 4.193 17 N -0.526 5.526 18 Si 0.812 3.188 19 H -0.181 1.181 20 H -0.213 1.213 21 H -0.204 1.204 22 C 0.091 3.909 23 C -0.062 4.062 24 N -0.184 5.184 25 H 0.125 0.875 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.165 0.835 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.154 0.846 32 H 0.239 0.761 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.304 11.583 -5.165 16.989 hybrid contribution 0.317 -1.618 -0.089 1.651 sum -10.987 9.965 -5.254 15.736 Atomic orbital electron populations 1.23213 0.76826 1.04835 1.02068 1.86010 1.23186 1.27146 1.90036 1.18762 0.90450 0.85760 1.06946 1.21265 1.00501 0.91412 1.05140 1.21056 0.94764 0.97307 1.03610 1.21151 0.94038 0.98073 0.99156 1.20801 1.00745 0.90102 1.08933 1.17617 0.87851 0.87733 0.99703 1.44351 1.03678 1.06588 1.82507 1.20969 0.81911 0.93924 1.03461 1.20829 0.82793 0.91401 0.81917 1.90511 1.59383 1.43735 1.56045 1.43714 1.03464 1.06094 1.63268 1.19609 0.97037 0.85778 1.44683 0.90007 1.25915 0.97668 1.01755 0.94000 1.69921 1.14634 1.38236 1.29842 0.85002 0.77521 0.77801 0.78437 1.18129 1.21257 1.20364 1.19138 0.98755 0.88193 0.84800 1.29502 0.90960 0.89975 0.95754 1.80731 1.10928 1.13749 1.12956 0.87474 0.91883 0.91546 0.83510 0.83454 0.83438 0.84570 0.76085 0.86890 0.90464 0.91414 0.85597 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 16 2 O -0.35 -10.37 9.74 -93.72 -0.91 -11.28 16 3 C 0.03 0.84 6.70 22.59 0.15 0.99 16 4 C -0.16 -3.67 9.04 22.34 0.20 -3.47 16 5 C -0.15 -2.90 10.04 22.29 0.22 -2.68 16 6 C -0.11 -2.21 10.04 22.27 0.22 -1.99 16 7 C -0.18 -4.75 9.31 22.38 0.21 -4.54 16 8 C 0.17 5.46 6.67 38.22 0.25 5.71 16 9 N -0.74 -26.56 5.70 -342.69 -1.95 -28.52 16 10 C 0.13 4.30 4.00 85.63 0.34 4.64 16 11 C 0.44 19.81 7.63 87.66 0.67 20.47 16 12 O -0.61 -32.63 15.34 -3.07 -0.05 -32.68 16 13 N -0.45 -20.12 2.60 -645.41 -1.68 -21.80 16 14 C -0.34 -17.57 9.27 84.04 0.78 -16.80 16 15 H 0.08 4.55 7.43 -2.91 -0.02 4.53 16 16 C 0.01 0.46 4.84 84.93 0.41 0.88 16 17 N -0.89 -43.57 9.58 21.66 0.21 -43.36 16 18 Si 0.99 39.38 29.60 68.60 2.03 41.41 16 19 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.29 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 22 C 0.22 7.85 4.91 84.57 0.42 8.27 16 23 C 0.26 10.68 12.81 89.49 1.15 11.82 16 24 N -0.50 -23.15 18.51 19.95 0.37 -22.78 16 25 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 27 H 0.07 1.00 7.67 -2.38 -0.02 0.98 16 28 H 0.15 2.44 6.30 -2.91 -0.02 2.42 16 29 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 30 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.14 3.16 6.74 -2.91 -0.02 3.14 16 32 H 0.40 16.47 6.80 -92.71 -0.63 15.84 16 33 H 0.11 3.01 7.23 -2.38 -0.02 2.99 16 34 H 0.08 2.61 7.31 -2.39 -0.02 2.59 16 35 H 0.28 13.07 8.31 -92.71 -0.77 12.30 16 36 H 0.13 4.62 6.63 -2.39 -0.02 4.61 16 37 H 0.14 3.47 6.69 -2.39 -0.02 3.46 16 Total: -1.00 -69.43 320.48 4.65 -64.78 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.49 Total: 29.34 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 6.14 Total: 24.89 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -3.05 Total: -116.46 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.96 Total: -43.96 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -69.43 4.65 -64.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068424325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.807 kcal (2) G-P(sol) polarization free energy of solvation -69.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds