Wall clock time and date at job start Tue Mar 31 2020 03:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 120.00310 * 2 1 4 4 H 1.07998 * 120.00227 * 322.03986 * 3 2 1 5 5 C 1.38814 * 120.00064 * 142.03421 * 3 2 1 6 6 N 1.31611 * 119.99968 * 157.08463 * 5 3 2 7 7 Si 1.86801 * 120.00075 * 337.08541 * 5 3 2 8 8 H 1.48496 * 109.47179 * 95.68579 * 7 5 3 9 9 H 1.48495 * 109.47221 * 215.68744 * 7 5 3 10 10 H 1.48503 * 109.46927 * 335.68707 * 7 5 3 11 11 C 1.46502 * 119.99666 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47555 * 89.99514 * 11 2 1 13 13 O 1.21299 * 119.99750 * 0.02562 * 12 11 2 14 14 N 1.34771 * 120.00400 * 179.97438 * 12 11 2 15 15 C 1.47063 * 121.06364 * 359.97438 * 14 12 11 16 16 C 1.50737 * 109.01969 * 221.99148 * 15 14 12 17 17 O 1.21291 * 119.60637 * 150.94762 * 16 15 14 18 18 N 1.34650 * 120.79111 * 330.92546 * 16 15 14 19 19 C 1.39906 * 120.72844 * 2.37873 * 18 16 15 20 20 C 1.38587 * 120.77192 * 193.92669 * 19 18 16 21 21 C 1.38265 * 119.85347 * 180.46216 * 20 19 18 22 22 C 1.38304 * 120.36541 * 0.02562 * 21 20 19 23 23 C 1.38348 * 120.18503 * 359.92417 * 22 21 20 24 24 C 1.38327 * 119.73108 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46402 * 265.88443 * 1 2 3 26 26 H 1.08993 * 109.47218 * 25.87935 * 1 2 3 27 27 H 1.09002 * 109.47268 * 145.88667 * 1 2 3 28 28 H 0.97005 * 120.00285 * 180.02562 * 6 5 3 29 29 H 1.08997 * 109.47369 * 329.99437 * 11 2 1 30 30 H 1.09007 * 109.47119 * 209.99751 * 11 2 1 31 31 H 1.09007 * 109.54597 * 341.84935 * 15 14 12 32 32 H 1.08995 * 109.54719 * 102.03304 * 15 14 12 33 33 H 0.97000 * 119.63166 * 182.40029 * 18 16 15 34 34 H 1.08006 * 120.07240 * 0.49083 * 20 19 18 35 35 H 1.07998 * 119.81725 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.90367 * 179.64687 * 22 21 20 37 37 H 1.07999 * 120.13432 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 1.7812 2.0222 -0.5753 5 6 3.3176 1.3130 0.7396 6 7 4.2039 2.2310 0.4173 7 14 3.6312 0.1811 2.1921 8 1 4.4695 -0.9642 1.7553 9 1 4.3371 0.9318 3.2613 10 1 2.3362 -0.3243 2.7144 11 6 2.1975 -1.2688 -0.0006 12 6 2.4486 -1.7034 -1.4215 13 8 2.0549 -1.0201 -2.3432 14 7 3.1115 -2.8505 -1.6683 15 6 3.6006 -3.6959 -0.5688 16 6 4.9854 -4.1870 -0.9054 17 8 5.7698 -4.4269 -0.0119 18 7 5.3620 -4.3629 -2.1861 19 6 4.4935 -4.0470 -3.2365 20 6 4.7516 -4.4846 -4.5259 21 6 3.8855 -4.1533 -5.5515 22 6 2.7625 -3.3868 -5.2980 23 6 2.4962 -2.9464 -4.0138 24 6 3.3577 -3.2762 -2.9831 25 1 -0.3632 -0.0738 1.0251 26 1 -0.3633 0.9245 -0.4485 27 1 -0.3634 -0.8508 -0.5764 28 1 5.0202 2.3197 0.9339 29 1 1.6085 -2.0286 0.5130 30 1 3.1500 -1.1387 0.5133 31 1 3.6340 -3.1134 0.3520 32 1 2.9322 -4.5468 -0.4379 33 1 6.2451 -4.7128 -2.3826 34 1 5.6271 -5.0835 -4.7291 35 1 4.0869 -4.4950 -6.5560 36 1 2.0940 -3.1276 -6.1057 37 1 1.6193 -2.3475 -3.8169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972905.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:48 Heat of formation + Delta-G solvation = 10.023732 kcal Electronic energy + Delta-G solvation = -23446.846789 eV Core-core repulsion = 19997.896625 eV Total energy + Delta-G solvation = -3448.950164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.40175 -39.21806 -38.46708 -35.78050 -35.41782 -34.70650 -31.72816 -30.72304 -29.69222 -28.30220 -27.14819 -26.03441 -23.57108 -22.90771 -21.58077 -20.46802 -19.17010 -18.35754 -17.72638 -17.09257 -16.83223 -16.25079 -15.75122 -15.21464 -15.02459 -14.51511 -14.36608 -14.16945 -13.81471 -13.57842 -13.42961 -13.16044 -12.89641 -12.63175 -12.45000 -12.02659 -11.82283 -11.55843 -11.47687 -10.87870 -10.82859 -10.64623 -10.60833 -10.31312 -9.90831 -9.72488 -9.31719 -8.62861 -8.48519 -7.69892 -6.98703 -6.09436 -3.51583 1.09766 1.31087 2.28812 2.69762 2.94587 3.08115 3.16776 3.37551 3.40665 3.78179 4.08998 4.38891 4.58706 4.78166 4.86687 4.94570 5.11701 5.12759 5.20873 5.31465 5.38343 5.43024 5.73111 5.80254 5.93806 6.01716 6.16513 6.20650 6.43295 6.54899 6.55299 6.57331 6.66740 6.79475 7.11004 7.31908 7.78220 7.89843 8.30434 8.51139 8.84233 9.57056 9.93849 11.05610 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.006438 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.010471 B = 4348.455481 C = 5204.771772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.582 5.582 3 C -0.268 4.268 4 H 0.082 0.918 5 C 0.036 3.964 6 N -0.888 5.888 7 Si 0.862 3.138 8 H -0.283 1.283 9 H -0.292 1.292 10 H -0.263 1.263 11 C 0.118 3.882 12 C 0.491 3.509 13 O -0.486 6.486 14 N -0.573 5.573 15 C 0.093 3.907 16 C 0.514 3.486 17 O -0.519 6.519 18 N -0.655 5.655 19 C 0.118 3.882 20 C -0.135 4.135 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.094 4.094 24 C 0.127 3.873 25 H 0.015 0.985 26 H 0.051 0.949 27 H 0.028 0.972 28 H 0.265 0.735 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.412 0.588 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -16.756 -7.710 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.302 5.302 3 C -0.397 4.397 4 H 0.100 0.900 5 C -0.166 4.166 6 N -0.528 5.528 7 Si 0.691 3.309 8 H -0.211 1.211 9 H -0.220 1.220 10 H -0.187 1.187 11 C -0.013 4.013 12 C 0.279 3.721 13 O -0.356 6.356 14 N -0.304 5.304 15 C -0.033 4.033 16 C 0.300 3.700 17 O -0.393 6.393 18 N -0.301 5.301 19 C 0.020 3.980 20 C -0.156 4.156 21 C -0.133 4.133 22 C -0.139 4.139 23 C -0.115 4.115 24 C 0.031 3.969 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.146 0.854 32 H 0.127 0.873 33 H 0.250 0.750 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.936 -16.180 -7.427 17.908 hybrid contribution 1.024 -0.754 0.620 1.415 sum -0.912 -16.934 -6.807 18.274 Atomic orbital electron populations 1.21115 0.83140 0.99818 0.97597 1.43734 1.01280 1.00824 1.84388 1.18807 1.06591 0.90057 1.24199 0.90006 1.25503 0.96589 0.96664 0.97835 1.69887 1.08163 1.35839 1.38926 0.87146 0.78303 0.80456 0.85005 1.21117 1.21954 1.18693 1.21554 0.98964 0.90613 0.90170 1.23636 0.75776 0.77236 0.95451 1.90607 1.47975 1.50809 1.46188 1.46555 1.57122 1.23409 1.03356 1.22037 0.91670 0.97147 0.92422 1.20938 0.90355 0.76658 0.82036 1.90812 1.53105 1.49873 1.45493 1.43494 1.17915 1.63728 1.04924 1.17632 0.90798 1.00933 0.88604 1.20517 1.01577 1.03104 0.90402 1.20887 0.94748 0.99107 0.98539 1.21084 0.97938 0.98474 0.96379 1.21165 0.99426 0.99520 0.91374 1.17736 0.94423 0.98445 0.86339 0.96694 0.93052 0.95279 0.92471 0.90496 0.89779 0.85413 0.87251 0.75000 0.85359 0.85583 0.85442 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.53 10.70 59.85 0.64 3.17 16 2 N -0.58 -13.85 1.96 -182.50 -0.36 -14.20 16 3 C -0.27 -7.56 9.88 -15.06 -0.15 -7.71 16 4 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 5 C 0.04 1.02 5.29 -17.43 -0.09 0.93 16 6 N -0.89 -27.24 13.97 55.49 0.78 -26.47 16 7 Si 0.86 21.17 25.10 -169.99 -4.27 16.91 16 8 H -0.28 -6.68 6.68 56.52 0.38 -6.30 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 10 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 11 C 0.12 2.46 3.45 -5.19 -0.02 2.44 16 12 C 0.49 10.03 7.64 -10.99 -0.08 9.94 16 13 O -0.49 -11.34 13.92 5.54 0.08 -11.27 16 14 N -0.57 -9.70 3.01 -114.10 -0.34 -10.04 16 15 C 0.09 1.32 6.39 -4.87 -0.03 1.29 16 16 C 0.51 7.76 7.90 -11.02 -0.09 7.68 16 17 O -0.52 -9.21 17.91 5.55 0.10 -9.11 16 18 N -0.66 -8.49 5.37 -9.78 -0.05 -8.54 16 19 C 0.12 1.57 6.58 -83.54 -0.55 1.02 16 20 C -0.13 -1.43 9.93 -39.44 -0.39 -1.82 16 21 C -0.11 -1.15 10.03 -39.55 -0.40 -1.55 16 22 C -0.12 -1.41 10.04 -39.52 -0.40 -1.80 16 23 C -0.09 -1.41 8.83 -39.51 -0.35 -1.76 16 24 C 0.13 1.99 6.11 -83.41 -0.51 1.48 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 1.02 8.01 -51.93 -0.42 0.60 16 27 H 0.03 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 30 H 0.08 1.90 2.77 -51.93 -0.14 1.75 16 31 H 0.13 1.86 6.24 -51.92 -0.32 1.54 16 32 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.41 4.33 8.82 -40.82 -0.36 3.97 16 34 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.15 2.47 6.11 -52.49 -0.32 2.15 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -34.94 309.85 -5.91 -40.86 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.10 Total: 3.89 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: -2.41 Total: 13.30 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.02 Total: -59.25 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.18 Total: -20.37 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.27 Total: 16.91 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.94 -5.91 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972905.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.880 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds