Wall clock time and date at job start Tue Mar 31 2020 03:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 120.00310 * 2 1 4 4 H 1.07998 * 120.00227 * 322.03986 * 3 2 1 5 5 C 1.38814 * 120.00064 * 142.03421 * 3 2 1 6 6 N 1.31611 * 119.99968 * 157.08463 * 5 3 2 7 7 Si 1.86801 * 120.00075 * 337.08541 * 5 3 2 8 8 H 1.48496 * 109.47179 * 95.68579 * 7 5 3 9 9 H 1.48495 * 109.47221 * 215.68744 * 7 5 3 10 10 H 1.48503 * 109.46927 * 335.68707 * 7 5 3 11 11 C 1.46502 * 119.99666 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47555 * 89.99514 * 11 2 1 13 13 O 1.21299 * 119.99750 * 0.02562 * 12 11 2 14 14 N 1.34771 * 120.00400 * 179.97438 * 12 11 2 15 15 C 1.47063 * 121.06364 * 359.97438 * 14 12 11 16 16 C 1.50737 * 109.01969 * 221.99148 * 15 14 12 17 17 O 1.21291 * 119.60637 * 150.94762 * 16 15 14 18 18 N 1.34650 * 120.79111 * 330.92546 * 16 15 14 19 19 C 1.39906 * 120.72844 * 2.37873 * 18 16 15 20 20 C 1.38587 * 120.77192 * 193.92669 * 19 18 16 21 21 C 1.38265 * 119.85347 * 180.46216 * 20 19 18 22 22 C 1.38304 * 120.36541 * 0.02562 * 21 20 19 23 23 C 1.38348 * 120.18503 * 359.92417 * 22 21 20 24 24 C 1.38327 * 119.73108 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46402 * 265.88443 * 1 2 3 26 26 H 1.08993 * 109.47218 * 25.87935 * 1 2 3 27 27 H 1.09002 * 109.47268 * 145.88667 * 1 2 3 28 28 H 0.97005 * 120.00285 * 180.02562 * 6 5 3 29 29 H 1.08997 * 109.47369 * 329.99437 * 11 2 1 30 30 H 1.09007 * 109.47119 * 209.99751 * 11 2 1 31 31 H 1.09007 * 109.54597 * 341.84935 * 15 14 12 32 32 H 1.08995 * 109.54719 * 102.03304 * 15 14 12 33 33 H 0.97000 * 119.63166 * 182.40029 * 18 16 15 34 34 H 1.08006 * 120.07240 * 0.49083 * 20 19 18 35 35 H 1.07998 * 119.81725 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.90367 * 179.64687 * 22 21 20 37 37 H 1.07999 * 120.13432 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 1.7812 2.0222 -0.5753 5 6 3.3176 1.3130 0.7396 6 7 4.2039 2.2310 0.4173 7 14 3.6312 0.1811 2.1921 8 1 4.4695 -0.9642 1.7553 9 1 4.3371 0.9318 3.2613 10 1 2.3362 -0.3243 2.7144 11 6 2.1975 -1.2688 -0.0006 12 6 2.4486 -1.7034 -1.4215 13 8 2.0549 -1.0201 -2.3432 14 7 3.1115 -2.8505 -1.6683 15 6 3.6006 -3.6959 -0.5688 16 6 4.9854 -4.1870 -0.9054 17 8 5.7698 -4.4269 -0.0119 18 7 5.3620 -4.3629 -2.1861 19 6 4.4935 -4.0470 -3.2365 20 6 4.7516 -4.4846 -4.5259 21 6 3.8855 -4.1533 -5.5515 22 6 2.7625 -3.3868 -5.2980 23 6 2.4962 -2.9464 -4.0138 24 6 3.3577 -3.2762 -2.9831 25 1 -0.3632 -0.0738 1.0251 26 1 -0.3633 0.9245 -0.4485 27 1 -0.3634 -0.8508 -0.5764 28 1 5.0202 2.3197 0.9339 29 1 1.6085 -2.0286 0.5130 30 1 3.1500 -1.1387 0.5133 31 1 3.6340 -3.1134 0.3520 32 1 2.9322 -4.5468 -0.4379 33 1 6.2451 -4.7128 -2.3826 34 1 5.6271 -5.0835 -4.7291 35 1 4.0869 -4.4950 -6.5560 36 1 2.0940 -3.1276 -6.1057 37 1 1.6193 -2.3475 -3.8169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972905.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:47 Heat of formation + Delta-G solvation = -15.731262 kcal Electronic energy + Delta-G solvation = -23447.963609 eV Core-core repulsion = 19997.896625 eV Total energy + Delta-G solvation = -3450.066984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.57258 -40.58757 -39.63484 -37.34935 -36.82773 -35.94185 -33.83242 -31.82458 -30.71195 -29.75818 -28.44911 -27.92510 -24.78536 -23.93209 -23.27994 -21.88604 -20.34360 -19.56791 -18.94381 -18.60220 -18.47262 -17.54763 -17.34121 -16.48867 -16.28217 -15.89180 -15.80399 -15.47471 -15.04694 -14.92077 -14.82780 -14.72035 -14.38712 -14.05077 -13.85073 -13.65418 -13.25227 -12.81055 -12.67011 -12.53296 -12.41988 -12.17120 -11.91187 -11.82428 -11.74157 -11.13481 -10.86809 -10.66056 -9.51281 -8.91715 -8.79554 -8.27865 -5.69102 0.05806 0.31812 1.15359 1.22295 1.37249 1.46793 1.55211 1.58758 1.90241 2.33825 2.79138 2.89981 3.00166 3.30622 3.47519 3.74111 3.85697 4.08944 4.16553 4.21895 4.26917 4.36024 4.39596 4.47399 4.64723 4.81062 4.98798 5.02440 5.09568 5.22276 5.46844 5.52106 5.58974 5.75298 5.81364 5.98729 6.07257 6.10660 6.71282 6.79705 7.05698 7.48809 7.88238 8.91717 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.006438 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.010471 B = 4348.455481 C = 5204.771772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.598 5.598 3 C -0.263 4.263 4 H 0.031 0.969 5 C -0.025 4.025 6 N -0.945 5.945 7 Si 0.934 3.066 8 H -0.268 1.268 9 H -0.301 1.301 10 H -0.234 1.234 11 C 0.114 3.886 12 C 0.491 3.509 13 O -0.530 6.530 14 N -0.569 5.569 15 C 0.086 3.914 16 C 0.511 3.489 17 O -0.551 6.551 18 N -0.645 5.645 19 C 0.109 3.891 20 C -0.123 4.123 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.116 4.116 24 C 0.091 3.909 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.264 0.736 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.151 0.849 33 H 0.424 0.576 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.149 0.851 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 -20.529 -8.305 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.320 5.320 3 C -0.393 4.393 4 H 0.049 0.951 5 C -0.221 4.221 6 N -0.588 5.588 7 Si 0.760 3.240 8 H -0.195 1.195 9 H -0.229 1.229 10 H -0.157 1.157 11 C -0.016 4.016 12 C 0.279 3.721 13 O -0.404 6.404 14 N -0.300 5.300 15 C -0.038 4.038 16 C 0.299 3.701 17 O -0.427 6.427 18 N -0.291 5.291 19 C 0.012 3.988 20 C -0.143 4.143 21 C -0.118 4.118 22 C -0.138 4.138 23 C -0.137 4.137 24 C -0.004 4.004 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.087 0.913 31 H 0.144 0.856 32 H 0.169 0.831 33 H 0.264 0.736 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.166 0.834 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.755 -20.037 -8.058 21.668 hybrid contribution 0.931 0.352 0.545 1.135 sum -0.824 -19.684 -7.514 21.086 Atomic orbital electron populations 1.21216 0.81004 1.00240 0.99216 1.43809 1.02729 1.00390 1.85073 1.18592 1.06733 0.90940 1.23015 0.95109 1.26215 0.96263 0.99088 1.00579 1.70043 1.09086 1.39147 1.40528 0.85996 0.79462 0.78474 0.80115 1.19518 1.22918 1.15672 1.21634 0.98794 0.90423 0.90763 1.23216 0.76109 0.77968 0.94807 1.90598 1.50179 1.52505 1.47097 1.46203 1.56170 1.22656 1.04921 1.22315 0.92182 0.98087 0.91228 1.21058 0.90371 0.76343 0.82372 1.90801 1.53845 1.51656 1.46443 1.43386 1.18429 1.62929 1.04312 1.17791 0.90211 1.01093 0.89695 1.21005 1.02403 1.01942 0.88964 1.21374 0.93108 0.97028 1.00269 1.21394 0.98972 0.98017 0.95463 1.21111 0.99201 1.00380 0.92980 1.17969 0.96198 1.00509 0.85724 0.94359 0.94464 0.92870 0.92664 0.85612 0.91300 0.85646 0.83126 0.73582 0.81647 0.81545 0.83372 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 4.91 10.70 127.77 1.37 6.28 16 2 N -0.60 -28.47 1.96 -731.29 -1.43 -29.90 16 3 C -0.26 -15.44 9.88 84.03 0.83 -14.61 16 4 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 5 C -0.02 -1.46 5.29 84.86 0.45 -1.01 16 6 N -0.95 -60.64 13.97 21.65 0.30 -60.34 16 7 Si 0.93 44.07 25.10 68.60 1.72 45.79 16 8 H -0.27 -11.89 6.68 99.48 0.66 -11.23 16 9 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 10 H -0.23 -9.87 7.11 99.48 0.71 -9.16 16 11 C 0.11 4.58 3.45 85.63 0.30 4.87 16 12 C 0.49 20.01 7.64 87.66 0.67 20.68 16 13 O -0.53 -25.59 13.92 -3.09 -0.04 -25.64 16 14 N -0.57 -18.71 3.01 -633.28 -1.91 -20.62 16 15 C 0.09 2.26 6.39 85.54 0.55 2.81 16 16 C 0.51 14.49 7.90 87.69 0.69 15.18 16 17 O -0.55 -18.71 17.91 -3.07 -0.05 -18.76 16 18 N -0.64 -15.14 5.37 -303.31 -1.63 -16.77 16 19 C 0.11 2.63 6.58 38.26 0.25 2.88 16 20 C -0.12 -2.07 9.93 22.36 0.22 -1.85 16 21 C -0.10 -1.56 10.03 22.29 0.22 -1.34 16 22 C -0.12 -2.52 10.04 22.31 0.22 -2.30 16 23 C -0.12 -3.43 8.83 22.32 0.20 -3.24 16 24 C 0.09 2.76 6.11 38.12 0.23 2.99 16 25 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.04 1.50 8.01 -2.39 -0.02 1.48 16 27 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 28 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 29 H 0.13 3.75 8.06 -2.39 -0.02 3.73 16 30 H 0.07 3.00 2.77 -2.38 -0.01 3.00 16 31 H 0.13 3.36 6.24 -2.38 -0.01 3.34 16 32 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.42 7.73 8.82 -92.71 -0.82 6.91 16 34 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 37 H 0.12 4.23 6.11 -2.91 -0.02 4.21 16 Total: -1.00 -81.61 309.85 3.42 -78.19 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.26 Total: 16.70 kcal Atomic # 6 Polarization: 25.15 SS G_CDS: 6.20 Total: 31.35 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -4.67 Total: -127.63 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.10 Total: -44.40 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.72 Total: 45.79 kcal Total: -81.61 3.42 -78.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972905.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.459 kcal (2) G-P(sol) polarization free energy of solvation -81.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds