Wall clock time and date at job start Tue Mar 31 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48500 * 109.46655 * 269.99900 * 3 2 1 5 5 H 1.48490 * 109.47227 * 29.99923 * 3 2 1 6 6 H 1.48502 * 109.46979 * 150.00308 * 3 2 1 7 7 C 1.39894 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99587 * 175.52773 * 7 2 1 9 9 C 1.41153 * 120.00437 * 355.53226 * 7 2 1 10 10 C 1.40872 * 120.16538 * 35.03995 * 9 7 2 11 11 C 1.36369 * 119.82627 * 180.23122 * 10 9 7 12 12 C 1.39480 * 120.17254 * 359.50648 * 11 10 9 13 13 N 1.39245 * 119.83557 * 180.25457 * 12 11 10 14 14 C 1.34780 * 119.99723 * 324.70963 * 13 12 11 15 15 O 1.21574 * 119.99917 * 4.28097 * 14 13 12 16 16 N 1.34775 * 119.99716 * 184.27732 * 14 13 12 17 17 C 1.47262 * 121.35241 * 179.97438 * 16 14 13 18 18 C 1.52985 * 108.18910 * 118.47595 * 17 16 14 19 19 N 1.45650 * 110.76996 * 46.72457 * 18 17 16 20 20 C 1.33383 * 124.59256 * 338.12926 * 19 18 17 21 21 O 1.21284 * 118.48732 * 184.29746 * 20 19 18 22 22 C 1.47053 * 121.35308 * 359.72151 * 16 14 13 23 23 C 1.39487 * 120.33222 * 0.22814 * 12 11 10 24 24 C 1.36377 * 120.16383 * 0.02562 * 23 12 11 25 25 H 0.97003 * 120.00133 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.08320 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.91285 * 179.77341 * 11 10 9 28 28 H 0.96999 * 119.99705 * 144.70979 * 13 12 11 29 29 H 1.09002 * 109.72223 * 238.14927 * 17 16 14 30 30 H 1.09005 * 109.71949 * 358.75826 * 17 16 14 31 31 H 1.08997 * 109.21969 * 167.05584 * 18 17 16 32 32 H 1.09006 * 109.21801 * 286.40020 * 18 17 16 33 33 H 0.97007 * 117.70765 * 158.10100 * 19 18 17 34 34 H 1.08999 * 109.56793 * 342.57822 * 22 16 14 35 35 H 1.08997 * 109.56862 * 102.93259 * 22 16 14 36 36 H 1.07994 * 119.91688 * 180.02562 * 23 12 11 37 37 H 1.07998 * 120.08279 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4403 2.6526 0.7000 6 1 3.5404 1.4401 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0857 -1.2130 -0.0724 9 6 1.3056 -2.4321 0.0963 10 6 0.0438 -2.5723 -0.5142 11 6 -0.6310 -3.7531 -0.4133 12 6 -0.0705 -4.8236 0.2833 13 7 -0.7633 -6.0277 0.3774 14 6 -2.1073 -6.0257 0.4784 15 8 -2.7205 -4.9783 0.4090 16 7 -2.7714 -7.1850 0.6561 17 6 -4.2392 -7.2174 0.7707 18 6 -4.7900 -8.0558 -0.3843 19 7 -4.0451 -9.3000 -0.5204 20 6 -2.8081 -9.4961 -0.0617 21 8 -2.2613 -10.5509 -0.3052 22 6 -2.0601 -8.4694 0.7380 23 6 1.1809 -4.6941 0.8858 24 6 1.8654 -3.5178 0.7978 25 1 -0.4850 0.8401 0.0004 26 1 -0.3897 -1.7456 -1.0572 27 1 -1.6001 -3.8609 -0.8777 28 1 -0.2786 -6.8679 0.3704 29 1 -4.5241 -7.6685 1.7212 30 1 -4.6352 -6.2035 0.7116 31 1 -5.8385 -8.2844 -0.1935 32 1 -4.7103 -7.4868 -1.3106 33 1 -4.4793 -10.0380 -0.9764 34 1 -1.0536 -8.3557 0.3354 35 1 -2.0050 -8.7906 1.7781 36 1 1.6088 -5.5274 1.4232 37 1 2.8344 -3.4192 1.2644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076085284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:24 Heat of formation + Delta-G solvation = -21.695295 kcal Electronic energy + Delta-G solvation = -22302.207153 eV Core-core repulsion = 18851.881549 eV Total energy + Delta-G solvation = -3450.325604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93058 -39.54362 -37.60657 -36.43609 -34.61532 -34.29968 -32.82162 -30.32274 -29.50639 -28.92910 -27.34234 -25.07975 -23.83457 -21.58461 -21.10427 -20.28006 -19.19548 -18.49350 -17.36693 -17.25006 -16.92772 -16.14270 -15.95179 -15.28415 -15.03047 -14.92873 -14.35294 -14.02799 -13.82205 -13.40221 -13.02081 -12.77514 -12.62538 -12.32582 -12.07933 -11.85123 -11.73967 -11.41723 -11.16827 -10.93945 -10.62012 -10.49050 -10.00676 -9.88572 -9.64385 -9.48086 -9.08661 -8.82350 -8.76617 -7.51054 -6.87449 -6.57824 -4.31667 2.23486 2.44515 2.69538 2.99142 3.06198 3.11756 3.12807 3.18507 3.54784 3.99946 4.05705 4.14343 4.48702 4.72239 4.75821 4.82792 4.99021 5.06984 5.46872 5.54118 5.66940 6.03897 6.14036 6.34518 6.40928 6.68965 6.78097 6.91878 7.05151 7.11155 7.25679 7.32346 7.65933 7.74067 7.82588 7.99816 8.10933 8.26502 8.36601 8.68912 8.86064 8.95288 9.04355 10.33247 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.037944 B = 0.003318 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.743438 B = 8436.740069 C = 8959.688814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.464 4.464 8 H 0.075 0.925 9 C 0.100 3.900 10 C -0.143 4.143 11 C -0.093 4.093 12 C 0.019 3.981 13 N -0.665 5.665 14 C 0.703 3.297 15 O -0.564 6.564 16 N -0.640 5.640 17 C 0.115 3.885 18 C 0.094 3.906 19 N -0.715 5.715 20 C 0.515 3.485 21 O -0.551 6.551 22 C 0.100 3.900 23 C -0.114 4.114 24 C -0.203 4.203 25 H 0.278 0.722 26 H 0.130 0.870 27 H 0.108 0.892 28 H 0.390 0.610 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.400 0.600 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 -13.449 0.849 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.097 3.903 10 C -0.163 4.163 11 C -0.113 4.113 12 C -0.074 4.074 13 N -0.312 5.312 14 C 0.405 3.595 15 O -0.440 6.440 16 N -0.382 5.382 17 C -0.009 4.009 18 C -0.032 4.032 19 N -0.367 5.367 20 C 0.301 3.699 21 O -0.428 6.428 22 C -0.027 4.027 23 C -0.134 4.134 24 C -0.223 4.223 25 H 0.089 0.911 26 H 0.148 0.852 27 H 0.126 0.874 28 H 0.225 0.775 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.235 0.765 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.806 -12.819 0.807 15.574 hybrid contribution 0.301 0.017 0.005 0.302 sum -8.505 -12.803 0.813 15.392 Atomic orbital electron populations 1.69793 1.07229 1.28711 1.37771 1.25883 0.94927 1.01132 0.92660 0.86211 0.80178 0.80617 0.79026 1.19554 1.20331 1.18781 1.19474 0.94650 0.90250 1.45078 0.90668 1.17722 0.92272 0.91841 0.88423 1.21299 0.96967 0.96054 1.02010 1.20648 0.98997 0.93278 0.98342 1.17094 0.94717 0.86286 1.09266 1.42256 1.04262 1.08686 1.75975 1.15826 0.82406 0.82911 0.78318 1.90943 1.66916 1.28996 1.57117 1.47390 1.06838 1.04905 1.79092 1.21778 0.79018 1.02932 0.97194 1.21865 0.95931 0.85046 1.00342 1.45362 1.15919 1.16419 1.59015 1.20217 0.81821 0.88360 0.79494 1.90807 1.66347 1.27419 1.58248 1.21669 0.97139 0.82445 1.01420 1.20051 0.95025 0.97556 1.00770 1.20680 1.01113 0.94557 1.05947 0.91116 0.85213 0.87387 0.77465 0.90552 0.86525 0.89161 0.90848 0.76508 0.86922 0.87759 0.89163 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.49 10.61 55.55 0.59 -20.90 16 2 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.09 29.56 -169.99 -5.03 14.07 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.35 9.02 -37.86 -0.34 -12.69 16 8 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 10 C -0.14 -3.82 8.61 -39.26 -0.34 -4.16 16 11 C -0.09 -2.28 8.61 -39.79 -0.34 -2.63 16 12 C 0.02 0.41 6.31 -83.57 -0.53 -0.11 16 13 N -0.66 -11.59 5.22 -14.10 -0.07 -11.66 16 14 C 0.70 12.16 8.17 -86.92 -0.71 11.45 16 15 O -0.56 -12.08 13.24 5.30 0.07 -12.01 16 16 N -0.64 -7.85 2.98 -180.09 -0.54 -8.38 16 17 C 0.11 1.06 6.53 -3.63 -0.02 1.03 16 18 C 0.09 0.65 7.34 -4.51 -0.03 0.62 16 19 N -0.72 -5.96 5.42 -61.44 -0.33 -6.30 16 20 C 0.52 5.67 7.83 -11.89 -0.09 5.58 16 21 O -0.55 -7.94 17.80 5.55 0.10 -7.85 16 22 C 0.10 1.01 6.43 -5.18 -0.03 0.98 16 23 C -0.11 -2.46 9.90 -39.79 -0.39 -2.85 16 24 C -0.20 -4.87 9.74 -39.26 -0.38 -5.25 16 25 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 26 H 0.13 3.63 6.15 -52.49 -0.32 3.30 16 27 H 0.11 2.68 6.22 -52.49 -0.33 2.36 16 28 H 0.39 5.41 6.44 -40.82 -0.26 5.15 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.12 1.24 7.06 -51.93 -0.37 0.87 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.40 2.77 8.80 -40.82 -0.36 2.41 16 34 H 0.11 1.10 5.92 -51.93 -0.31 0.79 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 311.02 15.07 4.69 4.69 Total: -1.00 -33.22 311.02 -8.46 -41.68 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -4.03 Total: 10.97 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -3.91 Total: -4.30 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.35 Total: -47.24 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.17 Total: -19.85 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.22 -8.46 -41.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076085284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.982 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds