Wall clock time and date at job start Tue Mar 31 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48500 * 109.46655 * 269.99900 * 3 2 1 5 5 H 1.48490 * 109.47227 * 29.99923 * 3 2 1 6 6 H 1.48502 * 109.46979 * 150.00308 * 3 2 1 7 7 C 1.39894 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99587 * 175.52773 * 7 2 1 9 9 C 1.41153 * 120.00437 * 355.53226 * 7 2 1 10 10 C 1.40872 * 120.16538 * 35.03995 * 9 7 2 11 11 C 1.36369 * 119.82627 * 180.23122 * 10 9 7 12 12 C 1.39480 * 120.17254 * 359.50648 * 11 10 9 13 13 N 1.39245 * 119.83557 * 180.25457 * 12 11 10 14 14 C 1.34780 * 119.99723 * 324.70963 * 13 12 11 15 15 O 1.21574 * 119.99917 * 4.28097 * 14 13 12 16 16 N 1.34775 * 119.99716 * 184.27732 * 14 13 12 17 17 C 1.47262 * 121.35241 * 179.97438 * 16 14 13 18 18 C 1.52985 * 108.18910 * 118.47595 * 17 16 14 19 19 N 1.45650 * 110.76996 * 46.72457 * 18 17 16 20 20 C 1.33383 * 124.59256 * 338.12926 * 19 18 17 21 21 O 1.21284 * 118.48732 * 184.29746 * 20 19 18 22 22 C 1.47053 * 121.35308 * 359.72151 * 16 14 13 23 23 C 1.39487 * 120.33222 * 0.22814 * 12 11 10 24 24 C 1.36377 * 120.16383 * 0.02562 * 23 12 11 25 25 H 0.97003 * 120.00133 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.08320 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.91285 * 179.77341 * 11 10 9 28 28 H 0.96999 * 119.99705 * 144.70979 * 13 12 11 29 29 H 1.09002 * 109.72223 * 238.14927 * 17 16 14 30 30 H 1.09005 * 109.71949 * 358.75826 * 17 16 14 31 31 H 1.08997 * 109.21969 * 167.05584 * 18 17 16 32 32 H 1.09006 * 109.21801 * 286.40020 * 18 17 16 33 33 H 0.97007 * 117.70765 * 158.10100 * 19 18 17 34 34 H 1.08999 * 109.56793 * 342.57822 * 22 16 14 35 35 H 1.08997 * 109.56862 * 102.93259 * 22 16 14 36 36 H 1.07994 * 119.91688 * 180.02562 * 23 12 11 37 37 H 1.07998 * 120.08279 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4403 2.6526 0.7000 6 1 3.5404 1.4401 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0857 -1.2130 -0.0724 9 6 1.3056 -2.4321 0.0963 10 6 0.0438 -2.5723 -0.5142 11 6 -0.6310 -3.7531 -0.4133 12 6 -0.0705 -4.8236 0.2833 13 7 -0.7633 -6.0277 0.3774 14 6 -2.1073 -6.0257 0.4784 15 8 -2.7205 -4.9783 0.4090 16 7 -2.7714 -7.1850 0.6561 17 6 -4.2392 -7.2174 0.7707 18 6 -4.7900 -8.0558 -0.3843 19 7 -4.0451 -9.3000 -0.5204 20 6 -2.8081 -9.4961 -0.0617 21 8 -2.2613 -10.5509 -0.3052 22 6 -2.0601 -8.4694 0.7380 23 6 1.1809 -4.6941 0.8858 24 6 1.8654 -3.5178 0.7978 25 1 -0.4850 0.8401 0.0004 26 1 -0.3897 -1.7456 -1.0572 27 1 -1.6001 -3.8609 -0.8777 28 1 -0.2786 -6.8679 0.3704 29 1 -4.5241 -7.6685 1.7212 30 1 -4.6352 -6.2035 0.7116 31 1 -5.8385 -8.2844 -0.1935 32 1 -4.7103 -7.4868 -1.3106 33 1 -4.4793 -10.0380 -0.9764 34 1 -1.0536 -8.3557 0.3354 35 1 -2.0050 -8.7906 1.7781 36 1 1.6088 -5.5274 1.4232 37 1 2.8344 -3.4192 1.2644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076085284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:24 Heat of formation + Delta-G solvation = -45.622209 kcal Electronic energy + Delta-G solvation = -22303.244702 eV Core-core repulsion = 18851.881549 eV Total energy + Delta-G solvation = -3451.363153 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01708 -40.75909 -39.24360 -37.53305 -36.21552 -35.44944 -34.48280 -31.41570 -31.25232 -30.59006 -28.41463 -26.68669 -24.85291 -23.25283 -22.77904 -21.64127 -20.19535 -19.72160 -19.19444 -18.49897 -17.88904 -17.21350 -17.16865 -16.86903 -16.23669 -16.04127 -15.72424 -15.52688 -15.09096 -14.62785 -14.51915 -14.17118 -13.96745 -13.59845 -13.56123 -13.30462 -13.10090 -12.84351 -12.66384 -12.54314 -12.28555 -11.85036 -11.71719 -11.56484 -11.24101 -10.90224 -10.54677 -10.22382 -9.82995 -9.41922 -8.69905 -8.46855 -6.29801 0.86742 1.16484 1.37823 1.40555 1.41777 1.49911 1.56053 2.08135 2.24773 2.26023 2.82611 2.85934 3.36640 3.71999 3.77021 3.95470 4.17077 4.31130 4.42862 4.46271 4.51105 4.71707 4.89190 5.00752 5.07263 5.17241 5.24932 5.34878 5.44793 5.60953 5.73134 5.77151 5.99370 6.12836 6.15538 6.17861 6.39414 6.74253 6.86965 6.99467 7.04535 7.05560 7.53850 8.46155 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.037944 B = 0.003318 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.743438 B = 8436.740069 C = 8959.688814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.023 3.977 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.498 4.498 8 H 0.078 0.922 9 C 0.066 3.934 10 C -0.166 4.166 11 C -0.106 4.106 12 C 0.037 3.963 13 N -0.659 5.659 14 C 0.701 3.299 15 O -0.611 6.611 16 N -0.630 5.630 17 C 0.106 3.894 18 C 0.100 3.900 19 N -0.705 5.705 20 C 0.515 3.485 21 O -0.589 6.589 22 C 0.099 3.901 23 C -0.108 4.108 24 C -0.208 4.208 25 H 0.282 0.718 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.411 0.589 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.064 0.936 33 H 0.409 0.591 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 -15.258 1.875 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.188 4.188 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.529 4.529 8 H 0.097 0.903 9 C 0.063 3.937 10 C -0.187 4.187 11 C -0.126 4.126 12 C -0.057 4.057 13 N -0.308 5.308 14 C 0.403 3.597 15 O -0.490 6.490 16 N -0.370 5.370 17 C -0.016 4.016 18 C -0.025 4.025 19 N -0.356 5.356 20 C 0.301 3.699 21 O -0.470 6.470 22 C -0.027 4.027 23 C -0.128 4.128 24 C -0.228 4.228 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.250 0.750 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.150 0.850 32 H 0.083 0.917 33 H 0.246 0.754 34 H 0.135 0.865 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.940 -14.712 1.829 17.312 hybrid contribution 0.182 0.369 -0.303 0.511 sum -8.758 -14.343 1.526 16.874 Atomic orbital electron populations 1.69911 1.08852 1.29744 1.38951 1.26815 0.95688 1.04615 0.91692 0.85090 0.78798 0.75756 0.79313 1.18770 1.19759 1.18010 1.19757 0.94968 0.91220 1.46936 0.90340 1.18048 0.92696 0.93198 0.89730 1.21161 0.97903 0.96294 1.03302 1.20659 0.98737 0.93912 0.99332 1.17126 0.94793 0.86957 1.06858 1.42047 1.04625 1.08060 1.76089 1.15972 0.82123 0.83685 0.77891 1.90926 1.67778 1.31296 1.58973 1.47344 1.08101 1.04122 1.77400 1.22084 0.76982 1.02925 0.99641 1.21935 0.97682 0.83924 0.98950 1.45343 1.15217 1.17090 1.57901 1.20281 0.82333 0.87850 0.79389 1.90803 1.67386 1.28861 1.59913 1.21863 0.96932 0.80826 1.03048 1.20405 0.94381 0.98067 0.99967 1.20941 1.01837 0.94660 1.05370 0.90791 0.87767 0.88328 0.75043 0.87701 0.88136 0.84973 0.91739 0.75439 0.86492 0.85025 0.84700 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.03 10.61 21.82 0.23 -46.80 16 2 C 0.02 1.22 5.42 85.24 0.46 1.68 16 3 Si 0.99 39.79 29.56 68.60 2.03 41.82 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.50 -27.34 9.02 23.39 0.21 -27.13 16 8 H 0.08 4.08 7.85 -2.91 -0.02 4.05 16 9 C 0.07 3.61 5.55 -21.28 -0.12 3.49 16 10 C -0.17 -9.32 8.61 22.48 0.19 -9.13 16 11 C -0.11 -5.40 8.61 22.13 0.19 -5.21 16 12 C 0.04 1.58 6.31 38.56 0.24 1.82 16 13 N -0.66 -21.79 5.22 -316.78 -1.65 -23.44 16 14 C 0.70 23.44 8.17 179.05 1.46 24.90 16 15 O -0.61 -26.39 13.24 -3.95 -0.05 -26.44 16 16 N -0.63 -13.99 2.98 -841.94 -2.51 -16.50 16 17 C 0.11 1.69 6.53 86.23 0.56 2.25 16 18 C 0.10 1.08 7.34 86.53 0.63 1.71 16 19 N -0.70 -9.68 5.42 -467.47 -2.53 -12.21 16 20 C 0.52 10.00 7.83 87.69 0.69 10.69 16 21 O -0.59 -15.89 17.80 -3.04 -0.05 -15.94 16 22 C 0.10 1.70 6.43 85.34 0.55 2.24 16 23 C -0.11 -4.46 9.90 22.14 0.22 -4.24 16 24 C -0.21 -9.90 9.74 22.48 0.22 -9.68 16 25 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 26 H 0.10 6.27 6.15 -2.91 -0.02 6.25 16 27 H 0.10 5.13 6.22 -2.91 -0.02 5.11 16 28 H 0.41 10.17 6.44 -92.71 -0.60 9.58 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 2.02 7.06 -2.38 -0.02 2.00 16 31 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.41 4.49 8.80 -92.70 -0.82 3.67 16 34 H 0.12 1.93 5.92 -2.39 -0.01 1.91 16 35 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 37 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -76.01 311.02 0.69 -75.31 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.28 Total: 30.81 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 5.52 Total: -6.60 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -6.47 Total: -98.96 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.11 Total: -42.38 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -76.01 0.69 -75.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076085284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.692 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds