Wall clock time and date at job start Tue Mar 31 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42091 * 108.57983 * 2 1 4 4 O 1.42098 * 108.57552 * 228.97057 * 2 1 3 5 5 C 1.81399 * 101.91987 * 114.48424 * 2 1 3 6 6 C 1.53002 * 109.47162 * 179.97438 * 5 2 1 7 7 C 1.50706 * 109.46925 * 180.02562 * 6 5 2 8 8 O 1.21279 * 120.00072 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99762 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.46871 * 90.00155 * 10 9 7 12 12 H 1.07998 * 120.00222 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00011 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99586 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99962 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47167 * 60.00444 * 15 13 11 17 17 H 1.48506 * 109.46866 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47193 * 299.99997 * 15 13 11 19 19 C 1.46504 * 119.99858 * 0.02562 * 9 7 6 20 20 C 1.52999 * 109.47507 * 89.99839 * 19 9 7 21 21 C 1.53003 * 117.49748 * 243.62506 * 20 19 9 22 22 C 1.52992 * 117.50002 * 174.99956 * 20 19 9 23 23 H 1.09005 * 109.47053 * 305.51648 * 1 2 3 24 24 H 1.09001 * 109.46751 * 65.51551 * 1 2 3 25 25 H 1.08995 * 109.47102 * 185.51242 * 1 2 3 26 26 H 1.09004 * 109.47089 * 59.99889 * 5 2 1 27 27 H 1.09004 * 109.47568 * 299.99879 * 5 2 1 28 28 H 1.09000 * 109.46497 * 60.00298 * 6 5 2 29 29 H 1.09000 * 109.47312 * 300.00077 * 6 5 2 30 30 H 1.09000 * 109.47710 * 210.00590 * 10 9 7 31 31 H 1.09000 * 109.46883 * 330.00634 * 10 9 7 32 32 H 0.97008 * 119.99716 * 180.02562 * 14 13 11 33 33 H 1.09005 * 109.47121 * 209.99861 * 19 9 7 34 34 H 1.08997 * 109.47160 * 329.99513 * 19 9 7 35 35 H 1.09002 * 115.54589 * 29.32423 * 20 19 9 36 36 H 1.08995 * 117.49876 * 359.97438 * 21 20 19 37 37 H 1.09002 * 117.49846 * 145.02378 * 21 20 19 38 38 H 1.09007 * 117.49671 * 214.97834 * 22 20 19 39 39 H 1.09002 * 117.50190 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8195 1.7980 7 6 4.0167 -1.4312 3.1397 8 8 3.1142 -1.7674 3.8769 9 7 5.2979 -1.6056 3.5199 10 6 5.6005 -2.1997 4.8243 11 6 5.7030 -3.6966 4.6829 12 1 5.5576 -4.1590 3.7179 13 6 5.9823 -4.4757 5.7857 14 7 6.1587 -3.9126 6.9610 15 14 6.1085 -6.3312 5.6105 16 1 7.1921 -6.6652 4.6516 17 1 6.4155 -6.9334 6.9328 18 1 4.8192 -6.8698 5.1079 19 6 6.3880 -1.2000 2.6291 20 6 6.7685 0.2535 2.9176 21 6 6.5546 1.2752 1.7989 22 6 7.9712 0.8309 2.1688 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4259 -0.9353 25 1 -0.3633 -1.0229 0.0987 26 1 1.7610 -1.7369 1.6665 27 1 1.7610 -0.1170 2.4043 28 1 4.1334 0.1816 1.7466 29 1 4.1328 -1.4384 1.0090 30 1 6.5468 -1.8040 5.1932 31 1 4.8052 -1.9549 5.5284 32 1 6.3556 -4.4607 7.7368 33 1 7.2526 -1.8421 2.7972 34 1 6.0634 -1.2918 1.5926 35 1 6.6059 0.5875 3.9424 36 1 6.1433 0.9116 0.8573 37 1 6.2513 2.2815 2.0876 38 1 8.5998 1.5451 2.7009 39 1 8.4918 0.1751 1.4709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088407538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:12 Heat of formation + Delta-G solvation = -83.584124 kcal Electronic energy + Delta-G solvation = -21517.502218 eV Core-core repulsion = 18167.644113 eV Total energy + Delta-G solvation = -3349.858105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.34256 -37.20590 -37.09152 -36.15288 -34.54413 -33.06825 -32.41480 -29.85359 -28.02397 -26.43553 -24.78529 -22.32247 -22.25189 -20.67002 -18.99574 -18.51025 -17.28909 -16.57013 -16.32266 -16.20955 -15.85191 -15.35628 -15.19705 -14.71946 -14.28340 -14.15386 -13.52825 -13.43664 -13.15289 -12.86362 -12.52374 -12.26397 -12.18833 -12.11106 -12.08599 -11.52517 -11.39987 -11.31010 -11.22636 -11.20978 -10.93368 -10.70183 -10.57060 -10.33531 -10.10984 -9.81249 -9.65910 -8.99889 -8.45281 -7.73800 -6.06579 -4.11446 -0.17043 2.58316 3.29645 3.31036 3.35027 3.38363 3.41278 3.79651 3.87220 4.02387 4.42723 4.52836 4.55822 4.61691 4.83633 4.89147 5.00502 5.05769 5.27614 5.28257 5.39648 5.42973 5.55660 5.58945 5.73449 5.82105 5.89030 6.00885 6.08720 6.21324 6.45790 7.02212 7.40054 7.49325 7.89409 8.20448 8.34792 8.85459 9.01569 9.53639 11.01501 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.004798 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.240409 B = 5834.611075 C = 7035.262844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.418 3.582 3 O -0.941 6.941 4 O -0.941 6.941 5 C -0.588 4.588 6 C -0.136 4.136 7 C 0.516 3.484 8 O -0.539 6.539 9 N -0.592 5.592 10 C 0.246 3.754 11 C -0.528 4.528 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.138 3.862 20 C -0.168 4.168 21 C -0.188 4.188 22 C -0.175 4.175 23 H 0.129 0.871 24 H 0.127 0.873 25 H 0.129 0.871 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.618 10.081 -13.149 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.601 3.399 3 O -0.938 6.938 4 O -0.939 6.939 5 C -0.718 4.718 6 C -0.178 4.178 7 C 0.301 3.699 8 O -0.417 6.417 9 N -0.323 5.323 10 C 0.127 3.873 11 C -0.567 4.567 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.014 3.986 20 C -0.187 4.187 21 C -0.225 4.225 22 C -0.212 4.212 23 H 0.148 0.852 24 H 0.145 0.855 25 H 0.148 0.852 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.481 10.145 -13.201 17.528 hybrid contribution -0.454 -1.294 0.635 1.512 sum -5.935 8.850 -12.566 16.476 Atomic orbital electron populations 1.30253 1.26972 1.11731 1.11579 1.07870 0.78335 0.75835 0.77869 1.93592 1.78971 1.34579 1.86681 1.93597 1.78975 1.66933 1.54352 1.30088 1.04777 1.14989 1.21948 1.21473 0.92524 1.04192 0.99579 1.19895 0.83373 0.79317 0.87334 1.90659 1.45168 1.51150 1.54726 1.48174 1.03987 1.59671 1.20436 1.19307 0.97097 0.92734 0.78152 1.21393 1.48651 0.91673 0.94974 0.92476 1.24927 0.95143 0.98918 0.95034 1.69924 1.48243 1.35823 0.99347 0.86558 0.78578 0.85075 0.77192 1.20214 1.21178 1.20220 1.21091 0.91841 0.92368 0.93345 1.22940 1.02697 0.95273 0.97839 1.23109 0.99913 0.99816 0.99634 1.22895 0.90954 1.03662 1.03716 0.85246 0.85453 0.85218 0.84216 0.84305 0.87710 0.87970 0.94807 0.93849 0.92652 0.89196 0.91300 0.87284 0.88756 0.88891 0.88948 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.81 10.62 101.05 1.07 -2.74 16 2 S 2.42 22.81 5.36 -107.50 -0.58 22.24 16 3 O -0.94 -11.78 18.10 -57.83 -1.05 -12.83 16 4 O -0.94 -12.15 18.10 -57.83 -1.05 -13.20 16 5 C -0.59 -6.55 5.09 37.16 0.19 -6.36 16 6 C -0.14 -1.94 4.26 -27.88 -0.12 -2.06 16 7 C 0.52 10.28 7.67 -10.98 -0.08 10.19 16 8 O -0.54 -12.84 15.56 5.56 0.09 -12.75 16 9 N -0.59 -12.18 2.46 -175.06 -0.43 -12.61 16 10 C 0.25 6.30 5.16 -5.19 -0.03 6.27 16 11 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 12 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 15 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 C 0.14 2.21 5.49 -4.04 -0.02 2.19 16 20 C -0.17 -2.35 5.95 -90.62 -0.54 -2.89 16 21 C -0.19 -2.19 9.18 -26.73 -0.25 -2.44 16 22 C -0.17 -2.00 10.25 -26.73 -0.27 -2.27 16 23 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16 24 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 25 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.14 1.48 8.10 -51.92 -0.42 1.06 16 27 H 0.14 1.40 8.10 -51.92 -0.42 0.98 16 28 H 0.10 1.32 6.85 -51.93 -0.36 0.96 16 29 H 0.10 1.30 7.40 -51.93 -0.38 0.91 16 30 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 34 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 35 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 36 H 0.09 1.02 7.87 -51.93 -0.41 0.62 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -37.33 343.42 -8.63 -45.96 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.04 Total: 0.45 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -0.47 Total: -13.51 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.31 Total: -38.17 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -2.01 Total: -38.77 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 22.81 SS G_CDS: -0.58 Total: 22.24 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.33 -8.63 -45.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088407538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.627 kcal (2) G-P(sol) polarization free energy of solvation -37.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds